FFCP PHASE1:Hg19::chr1:32169727..32169739,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1307|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2193|TSSclassifier=S|UniProt=A6NDR9,Q07092|association_with_transcript=28bp_to_ENST00000271069,NM_001856,uc001btk.1,uc001btl.3_5end|description=CAGE_peak_5_at_COL16A1_5end|id=chr1:32169727..32169739,-|ontology_enrichment_celltype=CL:0000055!7.97e-19!180;CL:0000183!7.40e-13!59;CL:0000680!7.50e-13!57;CL:0000056!7.50e-13!57;CL:0000355!7.50e-13!57;CL:0000187!1.02e-11!54;CL:0000192!4.87e-11!42;CL:0000514!4.87e-11!42;CL:0000393!2.50e-10!60;CL:0000211!2.50e-10!60;CL:0000359!5.13e-10!32;CL:0002371!3.37e-09!591;CL:0002321!9.94e-09!248;CL:0000220!1.48e-08!246;CL:0000057!2.99e-08!75;CL:0000144!5.66e-08!625|ontology_enrichment_celltype_v019=CL:0002076;3.57e-10;42!CL:0002368;9.71e-10;13!CL:0000359;1.53e-09;32!CL:0000154;3.43e-08;6!CL:0002159;5.54e-08;14!CL:0002251;3.03e-07;20!CL:0000192;4.88e-07;43!CL:0000622;5.05e-07;5|ontology_enrichment_celltype_v019_2=CL:0002076,9.88e-13,42;CL:0000359,2.13e-10,32;CL:0002368,9.57e-10,13;CL:0000192,1.41e-09,43;CL:0000514,1.41e-09,43;CL:0002321,1.17e-08,250;CL:0000680,2.37e-08,58;CL:0000056,2.37e-08,58;CL:0000355,2.37e-08,58;CL:0000154,3.31e-08,6;CL:0002159,5.70e-08,14;CL:0000187,1.26e-07,55;CL:0000223,2.80e-07,58;CL:0002251,2.88e-07,20;CL:0000622,5.17e-07,5|ontology_enrichment_development_v019=CL:0000514;4.88e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;4.79e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,3.90e-07,14|ontology_enrichment_uberon=UBERON:0000486!2.24e-14!82;UBERON:0000914!1.35e-12!83;UBERON:0002329!1.35e-12!83;UBERON:0003077!1.35e-12!83;UBERON:0003059!1.35e-12!83;UBERON:0007282!1.35e-12!83;UBERON:0009618!1.35e-12!83;UBERON:0007285!1.35e-12!83;UBERON:0001134!1.12e-11!61;UBERON:0002036!1.12e-11!61;UBERON:0003082!1.12e-11!61;UBERON:0002385!1.69e-11!63;UBERON:0001015!1.69e-11!63;UBERON:0000383!1.69e-11!63;UBERON:0004290!9.80e-11!70;UBERON:0000475!1.75e-10!365;UBERON:0003102!6.15e-10!95;UBERON:0000468!1.04e-07!659;UBERON:0005256!1.49e-07!143;UBERON:0002100!1.74e-07!216;UBERON:0004573!6.82e-07!33;UBERON:0004571!6.82e-07!33;UBERON:0001637!7.03e-07!42;UBERON:0003509!7.03e-07!42;UBERON:0004572!7.03e-07!42|ontology_enrichment_uberon_v019=UBERON:0004573;3.54e-09;33!UBERON:0004571;3.54e-09;33!UBERON:0003688;1.13e-08;6!UBERON:0002358;1.13e-08;6!UBERON:0003684;1.13e-08;6!UBERON:0001178;1.13e-08;6!UBERON:0001637;2.39e-07;42!UBERON:0003509;2.39e-07;42!UBERON:0004572;2.39e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0004573,1.92e-10,33;UBERON:0004571,1.92e-10,33;UBERON:0000486,6.49e-10,83;UBERON:0001637,9.77e-10,42;UBERON:0003509,9.77e-10,42;UBERON:0004572,9.77e-10,42;UBERON:0003688,1.41e-08,6;UBERON:0002358,1.41e-08,6;UBERON:0003684,1.41e-08,6;UBERON:0001178,1.41e-08,6;UBERON:0004872,6.11e-08,83;UBERON:0001134,2.30e-07,62;UBERON:0002036,2.30e-07,62;UBERON:0003082,2.30e-07,62;UBERON:0002385,6.34e-07,64;UBERON:0001015,6.34e-07,64;UBERON:0000383,6.34e-07,64;UBERON:0002329,8.10e-07,71;UBERON:0003059,8.10e-07,71;UBERON:0007282,8.10e-07,71;UBERON:0004290,8.10e-07,71;UBERON:0009618,8.10e-07,71|phase1_expression=3.99692434395225,3.21150785836475,3.52386010239928,5.00366491765652,3.12872766099101,5.23403114460221,0,0,0.261185628199839,0.491467873003018,0.697801167972428,2.40285509343189,3.69273769519835,0.495065411840187,0.662794751455832,0.672325146451775,0.602694528023977,0,3.90346239032406,0.123121058076788,0.612002073732759,0.313454721478088,0,0.136874425072884,0.251085279189606,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,6.43594857135249,6.024118375565,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79007586580942,1.0843174571537,2.50668955317945,1.15877215168659,0.795285947051099,5.35298357332899,0.283604451492204,0.221729397462564,0.43917392846563,0.327447688744282,9.83597278389864,5.19098219898201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4662572514208,7.9515512271251,2.40597972162702,8.87141511448566,6.88407889797153,1.06400514659507,1.12135520028461,6.4049397437823,4.68668341992604,0.311211035399766,0.538842688278752,0,1.36221684880438,1.72852777344,0,0,0.570471821544449,0,0,0.323745888736263,0,0.61246251376468,0,0,0,0.494533858557114,0.910161361938026,0,0,0.250237039743928,0.277064115484183,0.438977620880838,0.612975591598039,0.600952235626387,0.680593098960126,0.89694817844431,0.427114777637135,0,3.60109315301283,0.515262646192195,2.83404594050192,0.930584281657949,3.03797398034279,1.26668106709558,3.02920529092937,0.460249493211497,0,1.06502877754984,0.10075209822764,0.67824236924195,5.60456474173561,5.45492241181669,2.86804595389004,0.243947412259191,0.132529768321485,0.232387885739037,0.10366105501537,0.756962552626885,0,1.56449532329816,2.57296375277154,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711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78879735772,0,0.892769693028288,0,0,0,0.458729283404541,0,0,0,0.436350690340377,0,0.743990036333503,0.462175628631418,0,0,0,0,0,0,0.0918948995348449,0,0.227336094654718,0,0,0,0.426467963801962,0.23806443146374,0,0.248298857183432,1.45771421354797,0.381882949668989,0.404234377916439,0,0.342233301085281,0.134704106029175,0.0717222053926763,0.332660356546013,0.976839223331694,0,0,0,2.34640942403454,0.488965776731466,1.22068853494722,0.665756774185513,0,0|short_description=p5@COL16A1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=1307 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2193 | |||
|TSSclassifier=S | |||
|UniProt=A6NDR9,Q07092 | |||
|association_with_transcript=28bp_to_ENST00000271069,NM_001856,uc001btk.1,uc001btl.3_5end | |||
|description=CAGE_peak_5_at_COL16A1_5end | |||
|id=chr1:32169727..32169739,- | |||
|ontology_enrichment_celltype=CL:0000055!7.97e-19!180;CL:0000183!7.40e-13!59;CL:0000680!7.50e-13!57;CL:0000056!7.50e-13!57;CL:0000355!7.50e-13!57;CL:0000187!1.02e-11!54;CL:0000192!4.87e-11!42;CL:0000514!4.87e-11!42;CL:0000393!2.50e-10!60;CL:0000211!2.50e-10!60;CL:0000359!5.13e-10!32;CL:0002371!3.37e-09!591;CL:0002321!9.94e-09!248;CL:0000220!1.48e-08!246;CL:0000057!2.99e-08!75;CL:0000144!5.66e-08!625 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.57e-10;42!CL:0002368;9.71e-10;13!CL:0000359;1.53e-09;32!CL:0000154;3.43e-08;6!CL:0002159;5.54e-08;14!CL:0002251;3.03e-07;20!CL:0000192;4.88e-07;43!CL:0000622;5.05e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,9.88e-13,42;CL:0000359,2.13e-10,32;CL:0002368,9.57e-10,13;CL:0000192,1.41e-09,43;CL:0000514,1.41e-09,43;CL:0002321,1.17e-08,250;CL:0000680,2.37e-08,58;CL:0000056,2.37e-08,58;CL:0000355,2.37e-08,58;CL:0000154,3.31e-08,6;CL:0002159,5.70e-08,14;CL:0000187,1.26e-07,55;CL:0000223,2.80e-07,58;CL:0002251,2.88e-07,20;CL:0000622,5.17e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;4.88e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.79e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.90e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000486!2.24e-14!82;UBERON:0000914!1.35e-12!83;UBERON:0002329!1.35e-12!83;UBERON:0003077!1.35e-12!83;UBERON:0003059!1.35e-12!83;UBERON:0007282!1.35e-12!83;UBERON:0009618!1.35e-12!83;UBERON:0007285!1.35e-12!83;UBERON:0001134!1.12e-11!61;UBERON:0002036!1.12e-11!61;UBERON:0003082!1.12e-11!61;UBERON:0002385!1.69e-11!63;UBERON:0001015!1.69e-11!63;UBERON:0000383!1.69e-11!63;UBERON:0004290!9.80e-11!70;UBERON:0000475!1.75e-10!365;UBERON:0003102!6.15e-10!95;UBERON:0000468!1.04e-07!659;UBERON:0005256!1.49e-07!143;UBERON:0002100!1.74e-07!216;UBERON:0004573!6.82e-07!33;UBERON:0004571!6.82e-07!33;UBERON:0001637!7.03e-07!42;UBERON:0003509!7.03e-07!42;UBERON:0004572!7.03e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.54e-09;33!UBERON:0004571;3.54e-09;33!UBERON:0003688;1.13e-08;6!UBERON:0002358;1.13e-08;6!UBERON:0003684;1.13e-08;6!UBERON:0001178;1.13e-08;6!UBERON:0001637;2.39e-07;42!UBERON:0003509;2.39e-07;42!UBERON:0004572;2.39e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,1.92e-10,33;UBERON:0004571,1.92e-10,33;UBERON:0000486,6.49e-10,83;UBERON:0001637,9.77e-10,42;UBERON:0003509,9.77e-10,42;UBERON:0004572,9.77e-10,42;UBERON:0003688,1.41e-08,6;UBERON:0002358,1.41e-08,6;UBERON:0003684,1.41e-08,6;UBERON:0001178,1.41e-08,6;UBERON:0004872,6.11e-08,83;UBERON:0001134,2.30e-07,62;UBERON:0002036,2.30e-07,62;UBERON:0003082,2.30e-07,62;UBERON:0002385,6.34e-07,64;UBERON:0001015,6.34e-07,64;UBERON:0000383,6.34e-07,64;UBERON:0002329,8.10e-07,71;UBERON:0003059,8.10e-07,71;UBERON:0007282,8.10e-07,71;UBERON:0004290,8.10e-07,71;UBERON:0009618,8.10e-07,71 | |||
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| |||
|short_description=p5@COL16A1 | |||
}} |
Revision as of 05:16, 12 September 2013
Short description: | p5@COL16A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_COL16A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 28bp_to_ENST00000271069, NM_001856, uc001btk.1, uc001btl.3_5end |
EntrezGene: | COL16A1 |
HGNC: | 2193 |
UniProt: | A6NDR9Q07092 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 9.88e-13 | 42 |
vascular associated smooth muscle cell | 2.13e-10 | 32 |
respiratory epithelial cell | 9.57e-10 | 13 |
smooth muscle cell | 1.41e-09 | 43 |
smooth muscle myoblast | 1.41e-09 | 43 |
embryonic cell | 1.17e-08 | 250 |
muscle precursor cell | 2.37e-08 | 58 |
myoblast | 2.37e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.37e-08 | 58 |
protein secreting cell | 3.31e-08 | 6 |
general ecto-epithelial cell | 5.70e-08 | 14 |
muscle cell | 1.26e-07 | 55 |
endodermal cell | 2.80e-07 | 58 |
epithelial cell of alimentary canal | 2.88e-07 | 20 |
acinar cell | 5.17e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 1.92e-10 | 33 |
systemic arterial system | 1.92e-10 | 33 |
multilaminar epithelium | 6.49e-10 | 83 |
artery | 9.77e-10 | 42 |
arterial blood vessel | 9.77e-10 | 42 |
arterial system | 9.77e-10 | 42 |
omentum | 1.41e-08 | 6 |
peritoneum | 1.41e-08 | 6 |
abdominal cavity | 1.41e-08 | 6 |
visceral peritoneum | 1.41e-08 | 6 |
splanchnic layer of lateral plate mesoderm | 6.11e-08 | 83 |
skeletal muscle tissue | 2.30e-07 | 62 |
striated muscle tissue | 2.30e-07 | 62 |
myotome | 2.30e-07 | 62 |
muscle tissue | 6.34e-07 | 64 |
musculature | 6.34e-07 | 64 |
musculature of body | 6.34e-07 | 64 |
somite | 8.10e-07 | 71 |
presomitic mesoderm | 8.10e-07 | 71 |
presumptive segmental plate | 8.10e-07 | 71 |
dermomyotome | 8.10e-07 | 71 |
trunk paraxial mesoderm | 8.10e-07 | 71 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.90e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.