FFCP PHASE1:Mm9::chr11:68265138..68265156,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=40|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:68265138..68265156,+|id=chr11:68265138..68265156,+|ontology_enrichment_celltype=CL:0000791!4.57e-13!9;CL:0000789!4.57e-13!9;CL:0002420!4.57e-13!9;CL:0002419!4.57e-13!9;CL:0000790!4.57e-13!9;CL:0000624!3.24e-11!8;CL:0000084!2.24e-10!11;CL:0000827!2.24e-10!11;CL:0000838!2.28e-09!12;CL:0000542!1.61e-08!13;CL:0000051!1.61e-08!13;CL:0000893!1.08e-07!6;CL:0002489!1.08e-07!6;CL:0000898!1.08e-07!6;CL:0000809!1.08e-07!6;CL:0000810!1.08e-07!6;CL:0000895!1.08e-07!6;CL:0000808!1.08e-07!6;CL:0000894!1.08e-07!6;CL:0000806!1.08e-07!6;CL:0000807!1.08e-07!6;CL:0000805!1.08e-07!6;CL:0002425!1.08e-07!6;CL:0002436!1.08e-07!6;CL:0002427!1.08e-07!6;CL:0002428!1.08e-07!6;CL:0002429!1.08e-07!6;CL:0002433!1.08e-07!6;CL:0002431!1.08e-07!6;CL:0002432!1.08e-07!6;CL:0002031!3.41e-07!25|ontology_enrichment_celltype_v019_2=CL:0000791,6.05e-23,9;CL:0000789,6.05e-23,9;CL:0002420,6.05e-23,9;CL:0002419,6.05e-23,9;CL:0000790,6.05e-23,9;CL:0000084,8.39e-19,11;CL:0000827,8.39e-19,11;CL:0000838,3.02e-17,12;CL:0000624,9.63e-17,8;CL:0000542,6.27e-16,13;CL:0000051,6.27e-16,13;CL:0000738,3.36e-12,17;CL:0002087,3.36e-12,17;CL:0002031,1.31e-11,25;CL:0000625,9.82e-10,1;CL:0000815,1.73e-09,1;CL:0000792,1.73e-09,1;CL:0000988,5.04e-09,32;CL:0002032,5.04e-09,32;CL:0000037,5.04e-09,32;CL:0000837,5.04e-09,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.27e-13!48;UBERON:0004177!1.30e-12!29;UBERON:0002021!1.21e-11!10;UBERON:0000411!1.21e-11!10;UBERON:0001950!1.21e-11!10;UBERON:0000064!1.52e-10!99;UBERON:0002390!2.88e-10!45;UBERON:0003061!2.88e-10!45;UBERON:0002405!2.86e-09!70;UBERON:0002370!2.87e-09!23;UBERON:0000974!2.87e-09!23;UBERON:0004807!2.87e-09!23;UBERON:0005058!2.87e-09!23;UBERON:0003351!2.87e-09!23;UBERON:0009113!2.87e-09!23;UBERON:0003295!2.87e-09!23;UBERON:0009722!2.87e-09!23;UBERON:0005562!2.87e-09!23;UBERON:0007690!2.87e-09!23;UBERON:0006562!9.23e-09!24;UBERON:0003408!9.23e-09!24;UBERON:0001557!9.23e-09!24;UBERON:0001042!9.23e-09!24;UBERON:0008814!9.23e-09!24;UBERON:0009145!9.23e-09!24;UBERON:0000065!1.01e-08!41;UBERON:0001004!2.05e-08!42;UBERON:0000477!1.78e-07!154;UBERON:0000072!1.79e-07!27;UBERON:0005057!2.56e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0000029,2.52e-09,1;UBERON:0001097,2.52e-09,1;UBERON:0003968,2.52e-09,1;UBERON:0001467,2.52e-09,1;UBERON:0002021,1.24e-07,10;UBERON:0000411,1.24e-07,10;UBERON:0001950,1.24e-07,10|phase1_expression=0,0,0,0,0,0,0,5.03580961422147,0.563154888606667,0.234064526321993,0.171217968225505,0,5.47842335779858,6.99363219351979,0,0,0,1.57731082679119,0.685572168028694,0.42438965179803,0,0,0,0.319984845586813,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90144856804538,8.06625117941913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,2.33044095282455,0,0,0,0,0,0,0,0,0.289198713839823,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0.521472960576829,0.511430914660661,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,1.29327233116623,0,0,0,0,0,0,0,0.157635144106191,0.221464689648775,0,0.163863314715738,0,0.289298117163023,0,0,0,0.551873492609465,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32977250588296,0,0,0,0,0,0,0.512612642393558,0,0,0.188368457004691,0.410082683163076,0.457556346413045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.102710957164827,0.129920822977795,0,0,0,0,0.201932899896295,0.304827226619999,0,0.0974578807397524,0.0962118416403295,0.116876902181569,0,0,0,0,0,0.187682475451182,0,0,0,2.25900737046827,0.920650473014354,1.14579102687879,1.89038500578056,0.685082519770642,0,0.675022500231806,0.900642406448441,0.453142408984205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr11:68265138..68265156,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=40 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:68265138..68265156,+ | |||
|id=chr11:68265138..68265156,+ | |||
|ontology_enrichment_celltype=CL:0000791!4.57e-13!9;CL:0000789!4.57e-13!9;CL:0002420!4.57e-13!9;CL:0002419!4.57e-13!9;CL:0000790!4.57e-13!9;CL:0000624!3.24e-11!8;CL:0000084!2.24e-10!11;CL:0000827!2.24e-10!11;CL:0000838!2.28e-09!12;CL:0000542!1.61e-08!13;CL:0000051!1.61e-08!13;CL:0000893!1.08e-07!6;CL:0002489!1.08e-07!6;CL:0000898!1.08e-07!6;CL:0000809!1.08e-07!6;CL:0000810!1.08e-07!6;CL:0000895!1.08e-07!6;CL:0000808!1.08e-07!6;CL:0000894!1.08e-07!6;CL:0000806!1.08e-07!6;CL:0000807!1.08e-07!6;CL:0000805!1.08e-07!6;CL:0002425!1.08e-07!6;CL:0002436!1.08e-07!6;CL:0002427!1.08e-07!6;CL:0002428!1.08e-07!6;CL:0002429!1.08e-07!6;CL:0002433!1.08e-07!6;CL:0002431!1.08e-07!6;CL:0002432!1.08e-07!6;CL:0002031!3.41e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.05e-23,9;CL:0000789,6.05e-23,9;CL:0002420,6.05e-23,9;CL:0002419,6.05e-23,9;CL:0000790,6.05e-23,9;CL:0000084,8.39e-19,11;CL:0000827,8.39e-19,11;CL:0000838,3.02e-17,12;CL:0000624,9.63e-17,8;CL:0000542,6.27e-16,13;CL:0000051,6.27e-16,13;CL:0000738,3.36e-12,17;CL:0002087,3.36e-12,17;CL:0002031,1.31e-11,25;CL:0000625,9.82e-10,1;CL:0000815,1.73e-09,1;CL:0000792,1.73e-09,1;CL:0000988,5.04e-09,32;CL:0002032,5.04e-09,32;CL:0000037,5.04e-09,32;CL:0000837,5.04e-09,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.27e-13!48;UBERON:0004177!1.30e-12!29;UBERON:0002021!1.21e-11!10;UBERON:0000411!1.21e-11!10;UBERON:0001950!1.21e-11!10;UBERON:0000064!1.52e-10!99;UBERON:0002390!2.88e-10!45;UBERON:0003061!2.88e-10!45;UBERON:0002405!2.86e-09!70;UBERON:0002370!2.87e-09!23;UBERON:0000974!2.87e-09!23;UBERON:0004807!2.87e-09!23;UBERON:0005058!2.87e-09!23;UBERON:0003351!2.87e-09!23;UBERON:0009113!2.87e-09!23;UBERON:0003295!2.87e-09!23;UBERON:0009722!2.87e-09!23;UBERON:0005562!2.87e-09!23;UBERON:0007690!2.87e-09!23;UBERON:0006562!9.23e-09!24;UBERON:0003408!9.23e-09!24;UBERON:0001557!9.23e-09!24;UBERON:0001042!9.23e-09!24;UBERON:0008814!9.23e-09!24;UBERON:0009145!9.23e-09!24;UBERON:0000065!1.01e-08!41;UBERON:0001004!2.05e-08!42;UBERON:0000477!1.78e-07!154;UBERON:0000072!1.79e-07!27;UBERON:0005057!2.56e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000029,2.52e-09,1;UBERON:0001097,2.52e-09,1;UBERON:0003968,2.52e-09,1;UBERON:0001467,2.52e-09,1;UBERON:0002021,1.24e-07,10;UBERON:0000411,1.24e-07,10;UBERON:0001950,1.24e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,5.03580961422147,0.563154888606667,0.234064526321993,0.171217968225505,0,5.47842335779858,6.99363219351979,0,0,0,1.57731082679119,0.685572168028694,0.42438965179803,0,0,0,0.319984845586813,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90144856804538,8.06625117941913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,2.33044095282455,0,0,0,0,0,0,0,0,0.289198713839823,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0.521472960576829,0.511430914660661,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,1.29327233116623,0,0,0,0,0,0,0,0.157635144106191,0.221464689648775,0,0.163863314715738,0,0.289298117163023,0,0,0,0.551873492609465,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32977250588296,0,0,0,0,0,0,0.512612642393558,0,0,0.188368457004691,0.410082683163076,0.457556346413045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.102710957164827,0.129920822977795,0,0,0,0,0.201932899896295,0.304827226619999,0,0.0974578807397524,0.0962118416403295,0.116876902181569,0,0,0,0,0,0.187682475451182,0,0,0,2.25900737046827,0.920650473014354,1.14579102687879,1.89038500578056,0.685082519770642,0,0.675022500231806,0.900642406448441,0.453142408984205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr11:68265138..68265156,+ | |||
}} |
Revision as of 20:30, 12 September 2013
Short description: | p@chr11:68265138..68265156, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:68265138..68265156, + |
Coexpression cluster: | MCL_coexpression_mm9:40 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 6.05e-23 | 9 |
alpha-beta T cell | 6.05e-23 | 9 |
immature T cell | 6.05e-23 | 9 |
mature T cell | 6.05e-23 | 9 |
immature alpha-beta T cell | 6.05e-23 | 9 |
T cell | 8.39e-19 | 11 |
pro-T cell | 8.39e-19 | 11 |
lymphoid lineage restricted progenitor cell | 3.02e-17 | 12 |
CD4-positive, alpha-beta T cell | 9.63e-17 | 8 |
lymphocyte | 6.27e-16 | 13 |
common lymphoid progenitor | 6.27e-16 | 13 |
leukocyte | 3.36e-12 | 17 |
nongranular leukocyte | 3.36e-12 | 17 |
hematopoietic lineage restricted progenitor cell | 1.31e-11 | 25 |
CD8-positive, alpha-beta T cell | 9.82e-10 | 1 |
regulatory T cell | 1.73e-09 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.73e-09 | 1 |
hematopoietic cell | 5.04e-09 | 32 |
hematopoietic oligopotent progenitor cell | 5.04e-09 | 32 |
hematopoietic stem cell | 5.04e-09 | 32 |
hematopoietic multipotent progenitor cell | 5.04e-09 | 32 |
Ontology term | p-value | n |
---|---|---|
lymph node | 2.52e-09 | 1 |
axillary lymph node | 2.52e-09 | 1 |
peripheral lymph node | 2.52e-09 | 1 |
shoulder | 2.52e-09 | 1 |
occipital lobe | 1.24e-07 | 10 |
visual cortex | 1.24e-07 | 10 |
neocortex | 1.24e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.