FFCP PHASE1:Hg19::chr4:143369478..143369483,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C367|description=CAGE_peak_at_chr4:143369478..143369483,-|id=chr4:143369478..143369483,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000624;2.74e-12;6|ontology_enrichment_celltype_v019_2=CL:0000624,2.74e-12,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4929;3.61e-34;2!DOID:5093;8.69e-18;4!DOID:1612;8.69e-18;4!DOID:299;1.03e-11;25|ontology_enrichment_disease_v019_2=DOID:4929,3.61e-34,2;DOID:5093,8.69e-18,4;DOID:1612,8.69e-18,4;DOID:299,1.03e-11,25|ontology_enrichment_uberon=UBERON:0007023!1.66e-21!115;UBERON:0001049!7.71e-11!57;UBERON:0005068!7.71e-11!57;UBERON:0006241!7.71e-11!57;UBERON:0007135!7.71e-11!57;UBERON:0002616!2.59e-10!59;UBERON:0002020!8.93e-10!34;UBERON:0003528!8.93e-10!34;UBERON:0001017!9.80e-10!82;UBERON:0001893!2.16e-09!34;UBERON:0002308!4.74e-09!9;UBERON:0000125!4.74e-09!9;UBERON:0005743!5.02e-09!86;UBERON:0002294!5.89e-09!7;UBERON:0001173!5.89e-09!7;UBERON:0004912!5.89e-09!7;UBERON:0000955!6.21e-09!69;UBERON:0006238!6.21e-09!69;UBERON:0002780!1.40e-08!41;UBERON:0001890!1.40e-08!41;UBERON:0006240!1.40e-08!41;UBERON:0002346!1.73e-08!90;UBERON:0002791!2.20e-08!33;UBERON:0003080!2.65e-08!42;UBERON:0003075!3.19e-08!86;UBERON:0007284!3.19e-08!86;UBERON:0006331!3.82e-08!3;UBERON:0000073!1.17e-07!94;UBERON:0001016!1.17e-07!94;UBERON:0002298!1.26e-07!8;UBERON:0001869!2.51e-07!32;UBERON:0002394!9.58e-07!4;UBERON:0003928!9.58e-07!4|ontology_enrichment_uberon_v019=UBERON:0004913;1.23e-66;1!UBERON:0003703;1.23e-66;1!UBERON:0001174;1.23e-66;1!UBERON:0004914;1.23e-66;1!UBERON:0002114;2.62e-23;2!UBERON:0002394;7.35e-18;4!UBERON:0003928;7.35e-18;4!UBERON:0002108;1.40e-14;4!UBERON:0002294;8.16e-11;7!UBERON:0001173;8.16e-11;7!UBERON:0000058;5.73e-08;10!UBERON:0000310;6.13e-08;10!UBERON:0001443;2.47e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0004913,1.23e-66,1;UBERON:0003703,1.23e-66,1;UBERON:0001174,1.23e-66,1;UBERON:0004914,1.23e-66,1;UBERON:0002114,2.62e-23,2;UBERON:0002108,1.40e-14,4;UBERON:0002394,2.19e-12,6;UBERON:0003928,2.19e-12,6;UBERON:0002294,1.04e-08,9;UBERON:0001173,1.04e-08,9;UBERON:0004912,1.04e-08,9;UBERON:0000310,6.13e-08,10;UBERON:0001443,2.47e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,1.96505381374582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0.508189248444927,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0.307160702099232,0,0.281338832821026,0,0,0,0,0.276283915531148,0,0,0,0,0.359473404589307,0.537063524026827,0,0.0986434056369336,0,0,0,0.0927680981618513,0,2.08342208868187,0,0,0,0.254253650292766,0,0,0,0,0,0.241192877250816,0,0.221158519862449,0,0,0,0,0,0,0.23056390438806,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.0884575645033392,0.611030144933625,0.593042257361244,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587954384486266,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0.0801588202515337,0.213452994739353,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0.717873024576814,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0,0,0,0.88332946650923,0,0,0.115525666150338,0,0,0,0.150420656698515,0,0,0,0,3.54854606920909,0.0675375846183947,0,0.206686796501184,0.19024743058172,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0.0657727735628491,0,0.111231401892069,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.490296643507811,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.162806537221949,0,0,0.269475606319761,0,0.122241444182866,0,0,0,0|short_description=p@chr4:143369478..143369483,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C367 | |||
|description=CAGE_peak_at_chr4:143369478..143369483,- | |||
|id=chr4:143369478..143369483,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000624;2.74e-12;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,2.74e-12,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4929;3.61e-34;2!DOID:5093;8.69e-18;4!DOID:1612;8.69e-18;4!DOID:299;1.03e-11;25 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,3.61e-34,2;DOID:5093,8.69e-18,4;DOID:1612,8.69e-18,4;DOID:299,1.03e-11,25 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.66e-21!115;UBERON:0001049!7.71e-11!57;UBERON:0005068!7.71e-11!57;UBERON:0006241!7.71e-11!57;UBERON:0007135!7.71e-11!57;UBERON:0002616!2.59e-10!59;UBERON:0002020!8.93e-10!34;UBERON:0003528!8.93e-10!34;UBERON:0001017!9.80e-10!82;UBERON:0001893!2.16e-09!34;UBERON:0002308!4.74e-09!9;UBERON:0000125!4.74e-09!9;UBERON:0005743!5.02e-09!86;UBERON:0002294!5.89e-09!7;UBERON:0001173!5.89e-09!7;UBERON:0004912!5.89e-09!7;UBERON:0000955!6.21e-09!69;UBERON:0006238!6.21e-09!69;UBERON:0002780!1.40e-08!41;UBERON:0001890!1.40e-08!41;UBERON:0006240!1.40e-08!41;UBERON:0002346!1.73e-08!90;UBERON:0002791!2.20e-08!33;UBERON:0003080!2.65e-08!42;UBERON:0003075!3.19e-08!86;UBERON:0007284!3.19e-08!86;UBERON:0006331!3.82e-08!3;UBERON:0000073!1.17e-07!94;UBERON:0001016!1.17e-07!94;UBERON:0002298!1.26e-07!8;UBERON:0001869!2.51e-07!32;UBERON:0002394!9.58e-07!4;UBERON:0003928!9.58e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;1.23e-66;1!UBERON:0003703;1.23e-66;1!UBERON:0001174;1.23e-66;1!UBERON:0004914;1.23e-66;1!UBERON:0002114;2.62e-23;2!UBERON:0002394;7.35e-18;4!UBERON:0003928;7.35e-18;4!UBERON:0002108;1.40e-14;4!UBERON:0002294;8.16e-11;7!UBERON:0001173;8.16e-11;7!UBERON:0000058;5.73e-08;10!UBERON:0000310;6.13e-08;10!UBERON:0001443;2.47e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,1.23e-66,1;UBERON:0003703,1.23e-66,1;UBERON:0001174,1.23e-66,1;UBERON:0004914,1.23e-66,1;UBERON:0002114,2.62e-23,2;UBERON:0002108,1.40e-14,4;UBERON:0002394,2.19e-12,6;UBERON:0003928,2.19e-12,6;UBERON:0002294,1.04e-08,9;UBERON:0001173,1.04e-08,9;UBERON:0004912,1.04e-08,9;UBERON:0000310,6.13e-08,10;UBERON:0001443,2.47e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,1.96505381374582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0.508189248444927,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0.307160702099232,0,0.281338832821026,0,0,0,0,0.276283915531148,0,0,0,0,0.359473404589307,0.537063524026827,0,0.0986434056369336,0,0,0,0.0927680981618513,0,2.08342208868187,0,0,0,0.254253650292766,0,0,0,0,0,0.241192877250816,0,0.221158519862449,0,0,0,0,0,0,0.23056390438806,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.0884575645033392,0.611030144933625,0.593042257361244,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587954384486266,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0.0801588202515337,0.213452994739353,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0.717873024576814,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0,0,0,0.88332946650923,0,0,0.115525666150338,0,0,0,0.150420656698515,0,0,0,0,3.54854606920909,0.0675375846183947,0,0.206686796501184,0.19024743058172,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0.0657727735628491,0,0.111231401892069,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.490296643507811,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.162806537221949,0,0,0.269475606319761,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr4:143369478..143369483,- | |||
}} |
Revision as of 02:35, 13 September 2013
Short description: | p@chr4:143369478..143369483, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:143369478..143369483, - |
Coexpression cluster: | C367_papillotubular_Macrophage_clear_pharyngeal_Renal_endometrial_tubular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 2.74e-12 | 6 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 1.23e-66 | 1 |
extrahepatic bile duct | 1.23e-66 | 1 |
common bile duct | 1.23e-66 | 1 |
duodenal papilla | 1.23e-66 | 1 |
duodenum | 2.62e-23 | 2 |
small intestine | 1.40e-14 | 4 |
bile duct | 2.19e-12 | 6 |
digestive system duct | 2.19e-12 | 6 |
biliary system | 1.04e-08 | 9 |
biliary tree | 1.04e-08 | 9 |
biliary bud | 1.04e-08 | 9 |
breast | 6.13e-08 | 10 |
chest | 2.47e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 3.61e-34 | 2 |
thoracic cancer | 8.69e-18 | 4 |
breast cancer | 8.69e-18 | 4 |
adenocarcinoma | 1.03e-11 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.