FFCP PHASE1:Hg19::chr4:619347..619382,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5158|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8786|TSSclassifier=S|UniProt=P35913|association_with_transcript=0bp_to_ENST00000255622,NM_000283,NM_001145291,uc003gao.3,uc003gap.2_5end|coexpression_cluster_id=C40|description=CAGE_peak_4_at_PDE6B_5end|id=chr4:619347..619382,+|ontology_enrichment_celltype=CL:0002322!1.24e-18!5;CL:0000039!2.87e-12!7;CL:0000586!2.87e-12!7;CL:0000047!3.94e-07!8|ontology_enrichment_celltype_v019=CL:0002322;1.65e-46;5!CL:0002321;3.67e-22;15!CL:0000148;5.17e-09;10|ontology_enrichment_celltype_v019_2=CL:0002322,7.74e-47,5;CL:0000148,4.90e-09,10;CL:0000541,4.90e-09,10|ontology_enrichment_development_v019=UBERON:0003056;3.64e-14;3!UBERON:0001045;9.96e-11;1|ontology_enrichment_disease=DOID:3095!1.81e-11!22;DOID:2994!1.81e-11!22|ontology_enrichment_disease_v019=DOID:1799;9.96e-11;1!DOID:10165;9.96e-11;1!DOID:1798;9.96e-11;1|ontology_enrichment_disease_v019_2=DOID:1799,9.97e-11,1;DOID:10165,9.97e-11,1;DOID:1798,9.97e-11,1|ontology_enrichment_uberon=UBERON:0000473!1.53e-10!8;UBERON:0001905!9.23e-09!2;UBERON:0002757!9.23e-09!2;UBERON:0010134!9.23e-09!2;UBERON:0002784!9.23e-09!2;UBERON:0005408!9.23e-09!2;UBERON:0001899!9.23e-09!2;UBERON:0005743!3.13e-08!86;UBERON:0000073!3.76e-08!94;UBERON:0001016!3.76e-08!94;UBERON:0000970!7.60e-08!20;UBERON:0002346!9.10e-08!90;UBERON:0003056!1.34e-07!61;UBERON:0003135!1.41e-07!11;UBERON:0002104!2.01e-07!21;UBERON:0003075!2.99e-07!86;UBERON:0007284!2.99e-07!86;UBERON:0000966!3.04e-07!5;UBERON:0005388!3.04e-07!5;UBERON:0001802!3.04e-07!5;UBERON:0007023!7.04e-07!115|ontology_enrichment_uberon_v019=UBERON:0001905;1.38e-20;2!UBERON:0002757;1.38e-20;2!UBERON:0010134;1.38e-20;2!UBERON:0005408;1.38e-20;2!UBERON:0001899;1.38e-20;2!UBERON:0003296;9.06e-11;4!UBERON:0010133;9.06e-11;4!UBERON:0002784;9.06e-11;4!UBERON:0001154;9.96e-11;1!UBERON:0001153;9.96e-11;1!UBERON:0009854;9.96e-11;1!UBERON:0000966;7.42e-09;5!UBERON:0005388;7.42e-09;5!UBERON:0001802;7.42e-09;5!UBERON:0000970;5.04e-08;20!UBERON:0002104;1.20e-07;21!UBERON:0000020;5.41e-07;23|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.39e-20,2;UBERON:0002757,1.39e-20,2;UBERON:0010134,1.39e-20,2;UBERON:0005408,1.39e-20,2;UBERON:0001899,1.39e-20,2;UBERON:0001154,5.57e-11,1;UBERON:0001153,5.57e-11,1;UBERON:0001045,5.57e-11,1;UBERON:0003296,9.07e-11,4;UBERON:0010133,9.07e-11,4;UBERON:0002784,9.07e-11,4;UBERON:0000970,1.29e-07,21;UBERON:0002104,1.29e-07,21;UBERON:0000966,1.62e-07,6;UBERON:0005388,1.62e-07,6;UBERON:0001802,1.62e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82960559194393,1.72288698817931,1.62671520017326,1.45125477021519,1.7662459561294,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27523445472584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.541892875087706,1.00337954770971,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93398740871803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0.23056390438806,0.269272933229316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,80.4491437178695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0.160753148465019,0.275078873194468,0.83088067605837,0,0,0.0607495566580247,0,0.0788057072991982,3.09482069996489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02496607435179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0,2.23457967189298,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,1.57144016688853,0,0,0.135075169236789,0,0,0.0634158101939068,0,0,0,0,0,17.1424587481052,20.5133070553483,0,0,0,0,0,0,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,63.8285539497541,28.916490947089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4587292834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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5158 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8786 | |||
|TSSclassifier=S | |||
|UniProt=P35913 | |||
|association_with_transcript=0bp_to_ENST00000255622,NM_000283,NM_001145291,uc003gao.3,uc003gap.2_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_4_at_PDE6B_5end | |||
|id=chr4:619347..619382,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.24e-18!5;CL:0000039!2.87e-12!7;CL:0000586!2.87e-12!7;CL:0000047!3.94e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.65e-46;5!CL:0002321;3.67e-22;15!CL:0000148;5.17e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,7.74e-47,5;CL:0000148,4.90e-09,10;CL:0000541,4.90e-09,10 | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.64e-14;3!UBERON:0001045;9.96e-11;1 | |||
|ontology_enrichment_disease=DOID:3095!1.81e-11!22;DOID:2994!1.81e-11!22 | |||
|ontology_enrichment_disease_v019=DOID:1799;9.96e-11;1!DOID:10165;9.96e-11;1!DOID:1798;9.96e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,9.97e-11,1;DOID:10165,9.97e-11,1;DOID:1798,9.97e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.53e-10!8;UBERON:0001905!9.23e-09!2;UBERON:0002757!9.23e-09!2;UBERON:0010134!9.23e-09!2;UBERON:0002784!9.23e-09!2;UBERON:0005408!9.23e-09!2;UBERON:0001899!9.23e-09!2;UBERON:0005743!3.13e-08!86;UBERON:0000073!3.76e-08!94;UBERON:0001016!3.76e-08!94;UBERON:0000970!7.60e-08!20;UBERON:0002346!9.10e-08!90;UBERON:0003056!1.34e-07!61;UBERON:0003135!1.41e-07!11;UBERON:0002104!2.01e-07!21;UBERON:0003075!2.99e-07!86;UBERON:0007284!2.99e-07!86;UBERON:0000966!3.04e-07!5;UBERON:0005388!3.04e-07!5;UBERON:0001802!3.04e-07!5;UBERON:0007023!7.04e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.38e-20;2!UBERON:0002757;1.38e-20;2!UBERON:0010134;1.38e-20;2!UBERON:0005408;1.38e-20;2!UBERON:0001899;1.38e-20;2!UBERON:0003296;9.06e-11;4!UBERON:0010133;9.06e-11;4!UBERON:0002784;9.06e-11;4!UBERON:0001154;9.96e-11;1!UBERON:0001153;9.96e-11;1!UBERON:0009854;9.96e-11;1!UBERON:0000966;7.42e-09;5!UBERON:0005388;7.42e-09;5!UBERON:0001802;7.42e-09;5!UBERON:0000970;5.04e-08;20!UBERON:0002104;1.20e-07;21!UBERON:0000020;5.41e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.39e-20,2;UBERON:0002757,1.39e-20,2;UBERON:0010134,1.39e-20,2;UBERON:0005408,1.39e-20,2;UBERON:0001899,1.39e-20,2;UBERON:0001154,5.57e-11,1;UBERON:0001153,5.57e-11,1;UBERON:0001045,5.57e-11,1;UBERON:0003296,9.07e-11,4;UBERON:0010133,9.07e-11,4;UBERON:0002784,9.07e-11,4;UBERON:0000970,1.29e-07,21;UBERON:0002104,1.29e-07,21;UBERON:0000966,1.62e-07,6;UBERON:0005388,1.62e-07,6;UBERON:0001802,1.62e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82960559194393,1.72288698817931,1.62671520017326,1.45125477021519,1.7662459561294,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27523445472584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.541892875087706,1.00337954770971,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93398740871803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0.23056390438806,0.269272933229316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,80.4491437178695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0.160753148465019,0.275078873194468,0.83088067605837,0,0,0.0607495566580247,0,0.0788057072991982,3.09482069996489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02496607435179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0,2.23457967189298,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,1.57144016688853,0,0,0.135075169236789,0,0,0.0634158101939068,0,0,0,0,0,17.1424587481052,20.5133070553483,0,0,0,0,0,0,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,63.8285539497541,28.916490947089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0.874124575709564,2.78736702225161,0.203977659483963,1.87052183685892,0.36757959813938,0,0.0757786982182394,0.267964130156178,0,0,0,0,0.193766729508018,0.372448285775147,0,0,0,0,0,0.673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@PDE6B | |||
}} |
Revision as of 11:15, 13 September 2013
Short description: | p4@PDE6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PDE6B_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000255622, NM_000283, NM_001145291, uc003gao.3, uc003gap.2_5end |
EntrezGene: | PDE6B |
HGNC: | 8786 |
UniProt: | P35913 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 7.74e-47 | 5 |
melanocyte | 4.90e-09 | 10 |
melanoblast | 4.90e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.39e-20 | 2 |
regional part of epithalamus | 1.39e-20 | 2 |
secretory circumventricular organ | 1.39e-20 | 2 |
circumventricular organ | 1.39e-20 | 2 |
epithalamus | 1.39e-20 | 2 |
vermiform appendix | 5.57e-11 | 1 |
caecum | 5.57e-11 | 1 |
midgut | 5.57e-11 | 1 |
gland of diencephalon | 9.07e-11 | 4 |
neuroendocrine gland | 9.07e-11 | 4 |
regional part of diencephalon | 9.07e-11 | 4 |
eye | 1.29e-07 | 21 |
visual system | 1.29e-07 | 21 |
retina | 1.62e-07 | 6 |
photoreceptor array | 1.62e-07 | 6 |
posterior segment of eyeball | 1.62e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 9.97e-11 | 1 |
endocrine pancreas cancer | 9.97e-11 | 1 |
pancreatic endocrine carcinoma | 9.97e-11 | 1 |
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