FFCP PHASE1:Mm9::chr17:34257256..34257279,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14312|HGNC=|UniProt=F8WIU6,Q7JJ13|association_with_transcript=48bp_to_ENSMUST00000114241,uc008cbh.1,uc008cbk.1_5end|description=CAGE_peak_8_at_Brd2_5end|id=chr17:34257256..34257279,-|ontology_enrichment_celltype=CL:0000221!2.37e-08!44;CL:0000133!2.37e-08!44;CL:0002319!3.27e-08!43;CL:0000055!7.86e-08!50;CL:0000393!1.29e-07!39;CL:0000211!1.29e-07!39;CL:0000540!1.84e-07!33;CL:0000047!1.84e-07!33;CL:0000031!1.84e-07!33;CL:0000404!1.84e-07!33|ontology_enrichment_celltype_v019_2=CL:0000540,1.15e-08,33;CL:0000047,1.15e-08,33;CL:0000031,1.15e-08,33;CL:0000404,1.15e-08,33;CL:0002319,4.62e-08,43;CL:0000221,1.07e-07,44;CL:0000133,1.07e-07,44;CL:0000117,1.34e-07,23;CL:0000337,1.34e-07,23;CL:0000393,1.53e-07,39;CL:0000211,1.53e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.32e-10!73;UBERON:0005743!8.32e-10!73;UBERON:0004121!1.14e-09!102;UBERON:0000924!1.14e-09!102;UBERON:0006601!1.14e-09!102;UBERON:0000073!3.45e-09!75;UBERON:0001016!3.45e-09!75|ontology_enrichment_uberon_v019_2=UBERON:0000991,2.73e-08,18;UBERON:0005564,2.73e-08,18;UBERON:0004176,1.73e-07,17;UBERON:0009196,1.73e-07,17;UBERON:0009117,1.73e-07,17;UBERON:0001017,7.39e-07,73|phase1_expression=2.08193501236232,0,0.454999239389536,0,0,0.16787927191189,0.467225281191051,0,0.140788722151667,0.468129052643987,0,0.398860794976682,0,0.0874204024189974,0.333109761815663,0.202475267389826,0,0,0,0.42438965179803,0.340173160604279,0.0992909512008853,0.522399578277871,0,0,0,0,0,0,0,0,1.27006134691926,1.23012957516914,0,0,0.332469290716985,0,0,0,0,0,0,0.485510353031154,0.503587271902309,1.21652317463417,0.917733760808408,0.782391344348039,0.872100625521786,0.878744730937887,0.777719596297134,1.25987779462826,1.43752564364972,0.167782606057736,0,0.336093799142464,0.771778308107841,0.573066879877513,1.03134418455488,1.21389876515759,3.1739458756322,1.26766280701236,2.37191172448392,0.889294796111139,0.449949858640699,0,1.4209602298922,1.19840044207362,3.07374644257244,0.829516898467821,0.540023753326763,1.26194976810829,4.28476476605705,2.65042249141936,1.46988959057945,0.862609239164127,0,0,1.27687338085188,1.84327839907492,1.71452174049252,1.28082701043374,1.04182674111352,0.837548997004143,1.68828783009504,1.22238598221448,1.76777151284201,2.42031857358475,2.23679334990361,0.302904773332736,0.302286240427142,0.289864488701678,0,0,0.539703191637817,0,0.448026887097336,0,1.02258193546835,1.03914401841148,1.7666978725517,0.985903938436763,1.28326477414318,2.54805239706646,0,0,0.506719730950197,0,0.34255163915718,0,0.593768556259299,1.04091196059682,0.304465478312141,0,0.904335843315735,1.64624189989987,1.0053327306374,0,1.15679485535929,0,1.61766849947409,0,0,0,1.17112318804619,1.46612694769419,0,0.11981512450592,0,0.254140454146129,0.599162557619291,0.915001205637253,1.00523481690292,0.521472960576829,0.767146371990992,0.20778804455956,0.648965052271031,4.88828946481518,1.24406970610093,1.0108910337347,0.420883711772948,0.910843100738926,0.689706313300419,2.52086981727489,1.05493372485001,2.4493139694478,1.2811372028485,1.68663104207512,0.517406741478031,1.29340795759705,0.567318240503458,0.703804496655795,0.876782929710299,1.66828349535359,2.089512999133,1.02891068203972,2.38841120182192,0,0.51469581422943,0.568326998791185,1.86413195281952,0.703578179943289,0.180062061461015,1.18372367792605,1.37734962223183,0.617068451549513,0.232533944750408,0,1.16765342367169,0.822799249567402,1.31333971263276,0.810688095458557,0.146199987425332,0,0.268412837520744,0.420579897128254,1.3377599609307,0,0,1.2797295032114,0.232236671860439,0.902072229254653,1.4117846723634,0.667134131534611,0.570676878337677,0,0,0.251335208800269,0.596869416123452,0.38992817423824,0,0.432276099749388,0.398282546508734,1.32767530667157,0.799739588268102,1.1270773567308,1.22190796707189,0.775809948670503,1.75339549725796,0.758838445491087,0.590440591918409,0.156998727841375,0.616985819609003,0.296452627087149,0.667380422864376,0.393117990226406,0,0.202860121388503,0.482354319504834,0,0,0.486405680325106,0.274561413188081,0,0.744281895337007,0.312037673114561,0,0,0.482443521363367,0.184753190166605,0.757965647081939,1.46668478797823,0.339490171550376,1.64283173801951,1.17254380209271,1.42826184531608,2.92700471786698,0.630540576424764,0.8858587585951,1.2756381492599,0.655453258862952,0.518054945597687,0.433947175744535,0,0,0.491764273019036,0.275936746304732,0.642202359951168,0.586058432961016,0.983609672260053,0.757412781613119,1.26203287766503,0,0.430846795465598,0.955875191810208,1.78238939265915,2.54768877709949,0.809621403349789,1.16902343164525,1.18586333383957,1.28528526568723,0.851640511249612,3.02711526234334,3.74640006513225,1.48473110675282,0,0.242780636154981,1.209294227859,0.754420319023592,0.885905678642318,0,0.775284879504663,1.81766864738753,0.712994756769443,0.632073515871632,0,0,0.680879211507576,1.08036656418786,1.55230420539305,1.50035924522115,0.354680467284547,1.42695054081656,0.987294123612726,0.913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| ||
|EntrezGene=14312 | |||
|HGNC= | |||
|UniProt=F8WIU6,Q7JJ13 | |||
|association_with_transcript=48bp_to_ENSMUST00000114241,uc008cbh.1,uc008cbk.1_5end | |||
|description=CAGE_peak_8_at_Brd2_5end | |||
|id=chr17:34257256..34257279,- | |||
|ontology_enrichment_celltype=CL:0000221!2.37e-08!44;CL:0000133!2.37e-08!44;CL:0002319!3.27e-08!43;CL:0000055!7.86e-08!50;CL:0000393!1.29e-07!39;CL:0000211!1.29e-07!39;CL:0000540!1.84e-07!33;CL:0000047!1.84e-07!33;CL:0000031!1.84e-07!33;CL:0000404!1.84e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.15e-08,33;CL:0000047,1.15e-08,33;CL:0000031,1.15e-08,33;CL:0000404,1.15e-08,33;CL:0002319,4.62e-08,43;CL:0000221,1.07e-07,44;CL:0000133,1.07e-07,44;CL:0000117,1.34e-07,23;CL:0000337,1.34e-07,23;CL:0000393,1.53e-07,39;CL:0000211,1.53e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.32e-10!73;UBERON:0005743!8.32e-10!73;UBERON:0004121!1.14e-09!102;UBERON:0000924!1.14e-09!102;UBERON:0006601!1.14e-09!102;UBERON:0000073!3.45e-09!75;UBERON:0001016!3.45e-09!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000991,2.73e-08,18;UBERON:0005564,2.73e-08,18;UBERON:0004176,1.73e-07,17;UBERON:0009196,1.73e-07,17;UBERON:0009117,1.73e-07,17;UBERON:0001017,7.39e-07,73 | |||
|phase1_expression=2.08193501236232,0,0.454999239389536,0,0,0.16787927191189,0.467225281191051,0,0.140788722151667,0.468129052643987,0,0.398860794976682,0,0.0874204024189974,0.333109761815663,0.202475267389826,0,0,0,0.42438965179803,0.340173160604279,0.0992909512008853,0.522399578277871,0,0,0,0,0,0,0,0,1.27006134691926,1.23012957516914,0,0,0.332469290716985,0,0,0,0,0,0,0.485510353031154,0.503587271902309,1.21652317463417,0.917733760808408,0.782391344348039,0.872100625521786,0.878744730937887,0.777719596297134,1.25987779462826,1.43752564364972,0.167782606057736,0,0.336093799142464,0.771778308107841,0.573066879877513,1.03134418455488,1.21389876515759,3.1739458756322,1.26766280701236,2.37191172448392,0.889294796111139,0.449949858640699,0,1.4209602298922,1.19840044207362,3.07374644257244,0.829516898467821,0.540023753326763,1.26194976810829,4.28476476605705,2.65042249141936,1.46988959057945,0.862609239164127,0,0,1.27687338085188,1.84327839907492,1.71452174049252,1.28082701043374,1.04182674111352,0.837548997004143,1.68828783009504,1.22238598221448,1.76777151284201,2.42031857358475,2.23679334990361,0.302904773332736,0.302286240427142,0.289864488701678,0,0,0.539703191637817,0,0.448026887097336,0,1.02258193546835,1.03914401841148,1.7666978725517,0.985903938436763,1.28326477414318,2.54805239706646,0,0,0.506719730950197,0,0.34255163915718,0,0.593768556259299,1.04091196059682,0.304465478312141,0,0.904335843315735,1.64624189989987,1.0053327306374,0,1.15679485535929,0,1.61766849947409,0,0,0,1.17112318804619,1.46612694769419,0,0.11981512450592,0,0.254140454146129,0.599162557619291,0.915001205637253,1.00523481690292,0.521472960576829,0.767146371990992,0.20778804455956,0.648965052271031,4.88828946481518,1.24406970610093,1.0108910337347,0.420883711772948,0.910843100738926,0.689706313300419,2.52086981727489,1.05493372485001,2.4493139694478,1.2811372028485,1.68663104207512,0.517406741478031,1.29340795759705,0.567318240503458,0.703804496655795,0.876782929710299,1.66828349535359,2.089512999133,1.02891068203972,2.38841120182192,0,0.51469581422943,0.568326998791185,1.86413195281952,0.703578179943289,0.180062061461015,1.18372367792605,1.37734962223183,0.617068451549513,0.232533944750408,0,1.16765342367169,0.822799249567402,1.31333971263276,0.810688095458557,0.146199987425332,0,0.268412837520744,0.420579897128254,1.3377599609307,0,0,1.2797295032114,0.232236671860439,0.902072229254653,1.4117846723634,0.667134131534611,0.570676878337677,0,0,0.251335208800269,0.596869416123452,0.38992817423824,0,0.432276099749388,0.398282546508734,1.32767530667157,0.799739588268102,1.1270773567308,1.22190796707189,0.775809948670503,1.75339549725796,0.758838445491087,0.590440591918409,0.156998727841375,0.616985819609003,0.296452627087149,0.667380422864376,0.393117990226406,0,0.202860121388503,0.482354319504834,0,0,0.486405680325106,0.274561413188081,0,0.744281895337007,0.312037673114561,0,0,0.482443521363367,0.184753190166605,0.757965647081939,1.46668478797823,0.339490171550376,1.64283173801951,1.17254380209271,1.42826184531608,2.92700471786698,0.630540576424764,0.8858587585951,1.2756381492599,0.655453258862952,0.518054945597687,0.433947175744535,0,0,0.491764273019036,0.275936746304732,0.642202359951168,0.586058432961016,0.983609672260053,0.757412781613119,1.26203287766503,0,0.430846795465598,0.955875191810208,1.78238939265915,2.54768877709949,0.809621403349789,1.16902343164525,1.18586333383957,1.28528526568723,0.851640511249612,3.02711526234334,3.74640006513225,1.48473110675282,0,0.242780636154981,1.209294227859,0.754420319023592,0.885905678642318,0,0.775284879504663,1.81766864738753,0.712994756769443,0.632073515871632,0,0,0.680879211507576,1.08036656418786,1.55230420539305,1.50035924522115,0.354680467284547,1.42695054081656,0.987294123612726,0.913394847343798,0.23467170806371,0.21183207086382,0.661585194164886,0.49465875882444,1.77610869365496,0.904693873922338,0.596861720015682,1.14898629821543,0.582961673259701,0.741701208042039,0,0.619160603889667,0.370389054739423,0.376736914009382,0,0,0.339956859987711,0,0.138199973804424,0,1.26534397432454,1.42323626988794,0.540026704109006,0.418176592028937,0.436725127492355,0.404593039154462,1.07449492442937,0.26175594198403,0.259229946583586,0,0,1.94371509857172,2.15096037594227,2.33341426012857,1.93739735216597,1.35164900392623,2.8165737274981,1.3020438484395,1.25831213310853,1.44950472495604,0,0.316011120628178,0.608175645870493,0.410843828659309,0.129920822977795,0.179026695667481,0.39736270956253,0,0.443068581523732,0.302899349844443,0.685861259894999,0.504130925684203,0.292373642219257,0.0962118416403295,0.116876902181569,0,0.221985953374065,0.179427713218951,0,0.965947970160952,0.375364950902364,0.73260649706906,0.214368379079066,0,2.25900737046827,0.460325236507177,1.71868654031819,0.859265911718438,0.685082519770642,0,0,0.45032120322422,0.906284817968409,0.51776031175182,1.14166082342594,0.798049746802062,1.02440163452481,1.21553358534147,1.25767897576789,0.551530525350042,0.44449345560323,0.618105171716683,0.320919209591815,0.758091635291392,0.50695859978048,0.943131706930381,0.842773567228942,0.768301828858431,0.689225627467359,0.952587382566147,1.15884325944855,0.77163688185482,0.412085900803307,0.294397840268795,0.342869252385415,0,0.476872379894642,0.872078499793971,0.470546902076653,0.846146078916765,0.73171189149109,1.57841826862706,0.814824683075171,0.561142271657738,0.474540072496697,0.492522411877817,1.63692417267876,0.464810523557898,0.385813221962283,0.499621155875892,1.16965804222704,1.93383948643468,2.86932498103265,1.32354851471709,1.15933917810211 | |||
|short_description=p8@Brd2 | |||
}} | |||
Revision as of 14:11, 13 September 2013
| Short description: | p8@Brd2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_8_at_Brd2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 48bp_to_ENSMUST00000114241, uc008cbh.1, uc008cbk.1_5end |
| EntrezGene: | Brd2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron | 1.15e-08 | 33 |
| neuronal stem cell | 1.15e-08 | 33 |
| neuroblast | 1.15e-08 | 33 |
| electrically signaling cell | 1.15e-08 | 33 |
| neural cell | 4.62e-08 | 43 |
| ectodermal cell | 1.07e-07 | 44 |
| neurectodermal cell | 1.07e-07 | 44 |
| CNS neuron (sensu Vertebrata) | 1.34e-07 | 23 |
| neuroblast (sensu Vertebrata) | 1.34e-07 | 23 |
| electrically responsive cell | 1.53e-07 | 39 |
| electrically active cell | 1.53e-07 | 39 |
| Ontology term | p-value | n |
|---|---|---|
| gonad | 2.73e-08 | 18 |
| gonad primordium | 2.73e-08 | 18 |
| external genitalia | 1.73e-07 | 17 |
| indifferent external genitalia | 1.73e-07 | 17 |
| indifferent gonad | 1.73e-07 | 17 |
| central nervous system | 7.39e-07 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
