FFCP PHASE1:Mm9::chr19:4269140..4269200,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=245857|HGNC=|MCL_coexpression_id=1064|UniProt=Q8K330|association_with_transcript=0bp_to_ENSMUST00000037992,ENSMUST00000113852,NM_198113,uc008fzo.1,uc008fzp.1,uc008fzq.1,uc012bgi.1_5end|description=CAGE_peak_1_at_Ssh3_5end|id=chr19:4269140..4269200,-|ontology_enrichment_celltype=CL:0000066!6.52e-08!25;CL:0002076!8.23e-08!15|ontology_enrichment_celltype_v019_2=CL:0000066,6.42e-08,25;CL:0002076,8.11e-08,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!5.32e-14!43;UBERON:0005409!7.48e-14!59;UBERON:0000344!9.65e-10!15;UBERON:0007023!1.75e-09!51;UBERON:0001242!1.06e-08!13;UBERON:0000060!1.06e-08!13;UBERON:0001262!1.06e-08!13;UBERON:0004786!1.06e-08!13|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.14e-12,31;UBERON:0005409,8.11e-12,47;UBERON:0000344,9.47e-10,15;UBERON:0007023,1.72e-09,51;UBERON:0001242,1.05e-08,13;UBERON:0001262,1.05e-08,13;UBERON:0004786,1.05e-08,13|phase1_expression=6.08565618998217,43.9709013625595,40.0399330662792,46.8819527525587,46.0824071550639,27.8679591373737,26.1646157466989,0.774739940649458,0.281577444303333,0.70219357896598,0.513653904676515,0.159544317990673,0.856003649656029,0.524522414513984,0.666219523631325,3.03712901084739,2.79824751251259,3.15462165358238,3.29074640653773,3.81950686618227,8.92954546586233,0.0992909512008853,0,26.3987497609121,22.0232909824483,25.2662064210609,33.5994357004078,29.9505013433386,33.4441218243218,28.2273745331122,21.2861290229093,1.27006134691926,0.61506478758457,0,21.9527231010969,15.6260566636983,21.029443695024,9.62622750694888,5.4693474116666,7.85285615960697,5.29408339227913,5.46436387966757,4.85510353031154,17.3737608806297,16.9299475136589,11.1963518818626,27.3836970521814,11.5553332881637,25.4835971971987,24.1093074852111,13.0187372111587,10.062679505548,2.34895648480831,0,0.672187598284928,2.31533492432352,9.16907007804022,6.70373719960675,0.404632921719196,1.05798195854407,0,3.04960078862219,6.22506357277798,54.8938827541653,59.3319817540185,59.6803296554724,20.6724076257699,18.4424786554346,0.414758449233911,0.540023753326763,0.210324961351382,8.2838785477103,6.84692476950002,0.244981598429908,0.191690942036473,0,5.50579404996943,5.49055553766307,3.5329502648936,0.527545150920775,0.823388792421687,0,8.09630697104005,8.4414391504752,4.27835093775068,2.94628585473668,3.27454865837937,1.86399445825301,3.02904773332736,5.13886608726142,17.102004833399,6.88339101585109,2.719885334831,2.69851595818909,6.49776417447669,6.2723764193627,8.70755404816862,23.0080935480378,23.9003124234639,17.666978725517,15.4927761754349,21.815501160434,10.1922095882658,42.6640021891999,12.7729714196616,12.1612735428047,9.0994400102661,8.79215873836762,4.40194402200192,10.3909497345377,3.12273588179045,7.00270600117925,6.6878494204257,7.08396410597326,7.52567725668511,11.5613264023301,14.0901131608593,9.68815691363408,3.5384422077995,4.20593809863264,5.52103796150984,3.87900202508178,11.1835056730873,11.1256702864388,15.9179497178226,24.5238773000248,2.87556298814209,2.39961092397363,3.93917703926501,7.18995069143149,6.8625090422794,0.628271760564322,7.12679712788333,5.8814555185976,8.3115217823824,8.92326946872667,5.49932564791708,10.5745925018579,19.7123751578266,9.89076722666428,1.04096354370163,1.60931473103431,2.16074555766419,3.61691562805716,3.19771546011241,2.94661556655154,2.62364828767241,6.98499100995342,1.5089759505299,1.89106080167819,3.16712023495108,3.5071317188412,8.06337022754234,11.1440693287093,9.87754254758129,4.17971960318836,4.21327912387941,3.60287069960601,5.39910648851626,1.24275463521301,2.11073453982987,2.88099298337624,3.78791576936336,3.93528463494808,3.39387648352232,3.72054311600653,4.82892122519315,5.95503246072564,4.60767579757745,5.41752631461014,4.70199095365963,5.4093995347373,4.61055242111206,5.63666958793561,5.88811855979556,2.05809224758569,31.3897843834608,15.6025834331491,2.55945900642281,4.87697010906921,5.41243337552792,11.0925938542838,11.1189021922435,15.978952593455,18.506633400236,14.493508015713,19.3528110776208,21.8852119245266,22.0309418444606,26.0657628509724,23.9913235360911,29.4729084416463,4.93136542478012,2.85621281524322,5.63538678365402,6.10953983535943,8.33995694820791,6.8031745293609,9.35900749439008,10.0374900626129,12.7168969551514,13.2034965396327,11.5616524563988,0.500535317148282,0.589676985339609,1.34917267430912,1.01430060694251,0.72353147925725,1.78238096246994,4.60313819921297,2.7562988551756,2.74561413188081,4.31304619582064,6.32639611036456,2.49630138491648,6.06189307073068,6.27890947326693,10.6137574699941,15.888774354328,1.89491411770485,3.91115943460862,3.90413697282933,3.28566347603903,9.88286918906713,8.33152743101048,17.1717610114863,11.8226358079643,11.0732344824387,14.8292934851463,14.4199716949849,14.6782234586011,20.3955172599931,40.7136466636035,33.1782467129413,20.1623351937805,18.4877620024171,8.66973185934077,12.6588621519579,0,5.30188947129183,0.315508219416257,0.780877488593277,0.646270193198397,3.5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| ||
|EntrezGene=245857 | |||
|HGNC= | |||
|MCL_coexpression_id=1064 | |||
|UniProt=Q8K330 | |||
|association_with_transcript=0bp_to_ENSMUST00000037992,ENSMUST00000113852,NM_198113,uc008fzo.1,uc008fzp.1,uc008fzq.1,uc012bgi.1_5end | |||
|description=CAGE_peak_1_at_Ssh3_5end | |||
|id=chr19:4269140..4269200,- | |||
|ontology_enrichment_celltype=CL:0000066!6.52e-08!25;CL:0002076!8.23e-08!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.42e-08,25;CL:0002076,8.11e-08,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!5.32e-14!43;UBERON:0005409!7.48e-14!59;UBERON:0000344!9.65e-10!15;UBERON:0007023!1.75e-09!51;UBERON:0001242!1.06e-08!13;UBERON:0000060!1.06e-08!13;UBERON:0001262!1.06e-08!13;UBERON:0004786!1.06e-08!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.14e-12,31;UBERON:0005409,8.11e-12,47;UBERON:0000344,9.47e-10,15;UBERON:0007023,1.72e-09,51;UBERON:0001242,1.05e-08,13;UBERON:0001262,1.05e-08,13;UBERON:0004786,1.05e-08,13 | |||
|phase1_expression=6.08565618998217,43.9709013625595,40.0399330662792,46.8819527525587,46.0824071550639,27.8679591373737,26.1646157466989,0.774739940649458,0.281577444303333,0.70219357896598,0.513653904676515,0.159544317990673,0.856003649656029,0.524522414513984,0.666219523631325,3.03712901084739,2.79824751251259,3.15462165358238,3.29074640653773,3.81950686618227,8.92954546586233,0.0992909512008853,0,26.3987497609121,22.0232909824483,25.2662064210609,33.5994357004078,29.9505013433386,33.4441218243218,28.2273745331122,21.2861290229093,1.27006134691926,0.61506478758457,0,21.9527231010969,15.6260566636983,21.029443695024,9.62622750694888,5.4693474116666,7.85285615960697,5.29408339227913,5.46436387966757,4.85510353031154,17.3737608806297,16.9299475136589,11.1963518818626,27.3836970521814,11.5553332881637,25.4835971971987,24.1093074852111,13.0187372111587,10.062679505548,2.34895648480831,0,0.672187598284928,2.31533492432352,9.16907007804022,6.70373719960675,0.404632921719196,1.05798195854407,0,3.04960078862219,6.22506357277798,54.8938827541653,59.3319817540185,59.6803296554724,20.6724076257699,18.4424786554346,0.414758449233911,0.540023753326763,0.210324961351382,8.2838785477103,6.84692476950002,0.244981598429908,0.191690942036473,0,5.50579404996943,5.49055553766307,3.5329502648936,0.527545150920775,0.823388792421687,0,8.09630697104005,8.4414391504752,4.27835093775068,2.94628585473668,3.27454865837937,1.86399445825301,3.02904773332736,5.13886608726142,17.102004833399,6.88339101585109,2.719885334831,2.69851595818909,6.49776417447669,6.2723764193627,8.70755404816862,23.0080935480378,23.9003124234639,17.666978725517,15.4927761754349,21.815501160434,10.1922095882658,42.6640021891999,12.7729714196616,12.1612735428047,9.0994400102661,8.79215873836762,4.40194402200192,10.3909497345377,3.12273588179045,7.00270600117925,6.6878494204257,7.08396410597326,7.52567725668511,11.5613264023301,14.0901131608593,9.68815691363408,3.5384422077995,4.20593809863264,5.52103796150984,3.87900202508178,11.1835056730873,11.1256702864388,15.9179497178226,24.5238773000248,2.87556298814209,2.39961092397363,3.93917703926501,7.18995069143149,6.8625090422794,0.628271760564322,7.12679712788333,5.8814555185976,8.3115217823824,8.92326946872667,5.49932564791708,10.5745925018579,19.7123751578266,9.89076722666428,1.04096354370163,1.60931473103431,2.16074555766419,3.61691562805716,3.19771546011241,2.94661556655154,2.62364828767241,6.98499100995342,1.5089759505299,1.89106080167819,3.16712023495108,3.5071317188412,8.06337022754234,11.1440693287093,9.87754254758129,4.17971960318836,4.21327912387941,3.60287069960601,5.39910648851626,1.24275463521301,2.11073453982987,2.88099298337624,3.78791576936336,3.93528463494808,3.39387648352232,3.72054311600653,4.82892122519315,5.95503246072564,4.60767579757745,5.41752631461014,4.70199095365963,5.4093995347373,4.61055242111206,5.63666958793561,5.88811855979556,2.05809224758569,31.3897843834608,15.6025834331491,2.55945900642281,4.87697010906921,5.41243337552792,11.0925938542838,11.1189021922435,15.978952593455,18.506633400236,14.493508015713,19.3528110776208,21.8852119245266,22.0309418444606,26.0657628509724,23.9913235360911,29.4729084416463,4.93136542478012,2.85621281524322,5.63538678365402,6.10953983535943,8.33995694820791,6.8031745293609,9.35900749439008,10.0374900626129,12.7168969551514,13.2034965396327,11.5616524563988,0.500535317148282,0.589676985339609,1.34917267430912,1.01430060694251,0.72353147925725,1.78238096246994,4.60313819921297,2.7562988551756,2.74561413188081,4.31304619582064,6.32639611036456,2.49630138491648,6.06189307073068,6.27890947326693,10.6137574699941,15.888774354328,1.89491411770485,3.91115943460862,3.90413697282933,3.28566347603903,9.88286918906713,8.33152743101048,17.1717610114863,11.8226358079643,11.0732344824387,14.8292934851463,14.4199716949849,14.6782234586011,20.3955172599931,40.7136466636035,33.1782467129413,20.1623351937805,18.4877620024171,8.66973185934077,12.6588621519579,0,5.30188947129183,0.315508219416257,0.780877488593277,0.646270193198397,3.58453196928828,2.67358408898873,2.26461224631066,2.02405350837447,2.63030272120181,3.16230222357219,4.17717711348349,12.0649072427028,7.12262414669021,7.4928001302645,14.6823409445557,18.5843193675948,3.15614827001476,7.25576536715402,10.3732793865744,10.335566250827,11.9899707698132,16.0225541764297,12.3601468022352,6.06045543254026,14.8537276229834,20.0295356292498,17.5330423521918,23.4903327970114,2.34079422240703,6.07985813778946,5.5727629108214,7.80297028026004,6.42127743367454,6.74650984468696,10.656273219011,11.9682571112492,4.87213762986786,26.2428793685405,14.3451040059088,11.4639742954093,7.47880269109133,14.2053089363732,13.459553779095,21.2781010739791,9.27126510052548,4.95525554313773,5.36605856704379,3.88908507476395,3.01389531207506,2.59719032669948,4.57556346413045,9.85874893964361,9.51669875800874,8.29199842826543,27.6854479224383,2.53068794864908,6.70954241518601,9.72048067396211,15.0543573130417,18.5608179184251,18.61127980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| |||
|short_description=p1@Ssh3 | |||
}} | |||
Revision as of 17:40, 13 September 2013
| Short description: | p1@Ssh3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Ssh3_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1064 |
| Association with transcript: | 0bp_to_ENSMUST00000037992, ENSMUST00000113852, NM_198113, uc008fzo.1, uc008fzp.1, uc008fzq.1, uc012bgi.1_5end |
| EntrezGene: | Ssh3 |
| Link to Zenbu: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 6.42e-08 | 25 |
| endo-epithelial cell | 8.11e-08 | 15 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 2.14e-12 | 31 |
| gastrointestinal system | 8.11e-12 | 47 |
| mucosa | 9.47e-10 | 15 |
| adult organism | 1.72e-09 | 51 |
| intestinal mucosa | 1.05e-08 | 13 |
| wall of intestine | 1.05e-08 | 13 |
| gastrointestinal system mucosa | 1.05e-08 | 13 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
