FFCP PHASE1:Hg19::chr7:136553987..136554036,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1129|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=1951|TSSclassifier=S|UniProt=A4D1Q0,P08172,Q6SL56,Q86SJ1|association_with_transcript=0bp_to_NM_001006628_5end|coexpression_cluster_id=C4655|description=CAGE_peak_3_at_CHRM2_5end|id=chr7:136553987..136554036,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002622;1.64e-11;3!CL:0002504;6.29e-11;3!CL:1000279;6.29e-11;3!CL:1000280;6.29e-11;3!CL:0002195;2.10e-08;2!CL:0002571;2.10e-08;2!CL:1000487;3.62e-08;2|ontology_enrichment_celltype_v019_2=CL:0002622,1.58e-11,3;CL:0002504,5.23e-11,3;CL:1000279,5.23e-11,3;CL:1000280,5.23e-11,3;CL:0002195,2.07e-08,2;CL:0002571,2.07e-08,2;CL:1000487,3.75e-08,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:114;4.68e-07;2|ontology_enrichment_disease_v019_2=DOID:114,3.09e-07,2|ontology_enrichment_uberon=UBERON:0007023!1.47e-21!115;UBERON:0001049!1.96e-16!57;UBERON:0005068!1.96e-16!57;UBERON:0006241!1.96e-16!57;UBERON:0007135!1.96e-16!57;UBERON:0002020!2.21e-15!34;UBERON:0003528!2.21e-15!34;UBERON:0002780!3.08e-15!41;UBERON:0001890!3.08e-15!41;UBERON:0006240!3.08e-15!41;UBERON:0001869!4.66e-15!32;UBERON:0001893!5.33e-15!34;UBERON:0003080!1.10e-14!42;UBERON:0003075!1.30e-14!86;UBERON:0007284!1.30e-14!86;UBERON:0002346!2.17e-14!90;UBERON:0002616!3.09e-14!59;UBERON:0000955!3.15e-14!69;UBERON:0006238!3.15e-14!69;UBERON:0002791!3.92e-14!33;UBERON:0000073!1.07e-13!94;UBERON:0001016!1.07e-13!94;UBERON:0005743!2.02e-13!86;UBERON:0002619!3.99e-13!22;UBERON:0001017!7.65e-13!82;UBERON:0000062!5.29e-12!511;UBERON:0001950!1.59e-11!20;UBERON:0000956!5.26e-11!25;UBERON:0000203!5.26e-11!25;UBERON:0003056!5.28e-11!61;UBERON:0000468!1.62e-10!659;UBERON:0000481!2.71e-10!347;UBERON:0000033!5.00e-10!123;UBERON:0000475!1.07e-09!365;UBERON:0000064!3.49e-09!219;UBERON:0000153!5.40e-09!129;UBERON:0007811!5.40e-09!129;UBERON:0000924!6.48e-09!173;UBERON:0006601!6.48e-09!173;UBERON:0004121!7.09e-09!169;UBERON:0000467!8.80e-08!625;UBERON:0000059!1.01e-07!11;UBERON:0000480!1.03e-07!626;UBERON:0001155!1.66e-07!9;UBERON:0004111!4.55e-07!241|ontology_enrichment_uberon_v019=UBERON:0000059;9.94e-14;11!UBERON:0000160;3.04e-13;17!UBERON:0001155;1.49e-12;9!UBERON:0005409;2.34e-12;22!UBERON:0002367;4.35e-11;11!UBERON:0010147;4.35e-11;11!UBERON:0003937;4.24e-10;12!UBERON:0005399;4.24e-10;12!UBERON:0000988;4.43e-10;3!UBERON:0004921;8.24e-08;33!UBERON:0002148;4.68e-07;2!UBERON:0006331;4.68e-07;2!UBERON:0009662;4.68e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000059,6.53e-14,11;UBERON:0000160,2.24e-13,17;UBERON:0001046,3.98e-13,19;UBERON:0001155,1.02e-12,9;UBERON:0000162,1.94e-11,14;UBERON:0001353,1.94e-11,14;UBERON:0000163,1.94e-11,14;UBERON:0006866,1.94e-11,14;UBERON:0000164,1.94e-11,14;UBERON:0000931,1.94e-11,14;UBERON:0002367,4.60e-11,11;UBERON:0010147,4.60e-11,11;UBERON:0009846,4.60e-11,11;UBERON:0003353,4.60e-11,11;UBERON:0004902,4.60e-11,11;UBERON:0003820,4.60e-11,11;UBERON:0009847,4.60e-11,11;UBERON:0005409,8.14e-11,25;UBERON:0004122,1.33e-10,15;UBERON:0003937,4.45e-10,12;UBERON:0005399,4.45e-10,12;UBERON:0000988,8.12e-10,3;UBERON:0001007,2.49e-07,145;UBERON:0001555,2.49e-07,145;UBERON:0007026,2.49e-07,145;UBERON:0004921,2.62e-07,118;UBERON:0011216,5.09e-07,223;UBERON:0002148,7.52e-07,2;UBERON:0006331,7.52e-07,2;UBERON:0009662,7.52e-07,2|phase1_expression=0,0,0.281908808191942,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245668634623536,0.309977343527296,0,1.48360157567134,0,0,0,0,0.277064115484183,0.438977620880838,0,0,0.113432183160021,0,0.213557388818567,0.423863802319124,6.90209520994125,0.721367704669072,0.772921620136887,1.67505170698431,0.675105328965065,0.0974370051611986,0,0.184099797284599,0,3.55009592516614,1.61203357164224,0.508681776931463,0,0,0,0.243947412259191,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.65378176728,0,0,13.5628439458284,10.4007436911366,0.257207374262142,1.41849132023278,0.266422179016099,13.7258873911822,0.542621605391443,0,0,11.3725423597615,0,0,0,0,0,0,0,0.718874566474748,2.29723871668228,0,0.723906533337896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,2.14114786556594,0.157702415033935,0,0,0,0,0.664225598535437,0,0.260650843404249,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0.640695746278505,5.11707249066703,0.804269605718038,0,0,0,0,0,0,0,0,0,5.62590796006573,5.46273504020151,17.9640448494411,0,0,0,0,0,0,0,0.4318318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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1129 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1951 | |||
|TSSclassifier=S | |||
|UniProt=A4D1Q0,P08172,Q6SL56,Q86SJ1 | |||
|association_with_transcript=0bp_to_NM_001006628_5end | |||
|coexpression_cluster_id=C4655 | |||
|description=CAGE_peak_3_at_CHRM2_5end | |||
|id=chr7:136553987..136554036,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002622;1.64e-11;3!CL:0002504;6.29e-11;3!CL:1000279;6.29e-11;3!CL:1000280;6.29e-11;3!CL:0002195;2.10e-08;2!CL:0002571;2.10e-08;2!CL:1000487;3.62e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002622,1.58e-11,3;CL:0002504,5.23e-11,3;CL:1000279,5.23e-11,3;CL:1000280,5.23e-11,3;CL:0002195,2.07e-08,2;CL:0002571,2.07e-08,2;CL:1000487,3.75e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;4.68e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.09e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.47e-21!115;UBERON:0001049!1.96e-16!57;UBERON:0005068!1.96e-16!57;UBERON:0006241!1.96e-16!57;UBERON:0007135!1.96e-16!57;UBERON:0002020!2.21e-15!34;UBERON:0003528!2.21e-15!34;UBERON:0002780!3.08e-15!41;UBERON:0001890!3.08e-15!41;UBERON:0006240!3.08e-15!41;UBERON:0001869!4.66e-15!32;UBERON:0001893!5.33e-15!34;UBERON:0003080!1.10e-14!42;UBERON:0003075!1.30e-14!86;UBERON:0007284!1.30e-14!86;UBERON:0002346!2.17e-14!90;UBERON:0002616!3.09e-14!59;UBERON:0000955!3.15e-14!69;UBERON:0006238!3.15e-14!69;UBERON:0002791!3.92e-14!33;UBERON:0000073!1.07e-13!94;UBERON:0001016!1.07e-13!94;UBERON:0005743!2.02e-13!86;UBERON:0002619!3.99e-13!22;UBERON:0001017!7.65e-13!82;UBERON:0000062!5.29e-12!511;UBERON:0001950!1.59e-11!20;UBERON:0000956!5.26e-11!25;UBERON:0000203!5.26e-11!25;UBERON:0003056!5.28e-11!61;UBERON:0000468!1.62e-10!659;UBERON:0000481!2.71e-10!347;UBERON:0000033!5.00e-10!123;UBERON:0000475!1.07e-09!365;UBERON:0000064!3.49e-09!219;UBERON:0000153!5.40e-09!129;UBERON:0007811!5.40e-09!129;UBERON:0000924!6.48e-09!173;UBERON:0006601!6.48e-09!173;UBERON:0004121!7.09e-09!169;UBERON:0000467!8.80e-08!625;UBERON:0000059!1.01e-07!11;UBERON:0000480!1.03e-07!626;UBERON:0001155!1.66e-07!9;UBERON:0004111!4.55e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0000059;9.94e-14;11!UBERON:0000160;3.04e-13;17!UBERON:0001155;1.49e-12;9!UBERON:0005409;2.34e-12;22!UBERON:0002367;4.35e-11;11!UBERON:0010147;4.35e-11;11!UBERON:0003937;4.24e-10;12!UBERON:0005399;4.24e-10;12!UBERON:0000988;4.43e-10;3!UBERON:0004921;8.24e-08;33!UBERON:0002148;4.68e-07;2!UBERON:0006331;4.68e-07;2!UBERON:0009662;4.68e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000059,6.53e-14,11;UBERON:0000160,2.24e-13,17;UBERON:0001046,3.98e-13,19;UBERON:0001155,1.02e-12,9;UBERON:0000162,1.94e-11,14;UBERON:0001353,1.94e-11,14;UBERON:0000163,1.94e-11,14;UBERON:0006866,1.94e-11,14;UBERON:0000164,1.94e-11,14;UBERON:0000931,1.94e-11,14;UBERON:0002367,4.60e-11,11;UBERON:0010147,4.60e-11,11;UBERON:0009846,4.60e-11,11;UBERON:0003353,4.60e-11,11;UBERON:0004902,4.60e-11,11;UBERON:0003820,4.60e-11,11;UBERON:0009847,4.60e-11,11;UBERON:0005409,8.14e-11,25;UBERON:0004122,1.33e-10,15;UBERON:0003937,4.45e-10,12;UBERON:0005399,4.45e-10,12;UBERON:0000988,8.12e-10,3;UBERON:0001007,2.49e-07,145;UBERON:0001555,2.49e-07,145;UBERON:0007026,2.49e-07,145;UBERON:0004921,2.62e-07,118;UBERON:0011216,5.09e-07,223;UBERON:0002148,7.52e-07,2;UBERON:0006331,7.52e-07,2;UBERON:0009662,7.52e-07,2 | |||
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|short_description=p3@CHRM2 | |||
}} |
Revision as of 23:25, 13 September 2013
Short description: | p3@CHRM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CHRM2_5end |
Coexpression cluster: | C4655_normal_sacrococcigeal_Prostate_Mesenchymal_Smooth_smooth_gall |
Association with transcript: | 0bp_to_NM_001006628_5end |
EntrezGene: | CHRM2 |
HGNC: | 1951 |
UniProt: | A4D1Q0P08172Q6SL56Q86SJ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
prostate stromal cell | 1.58e-11 | 3 |
enteric smooth muscle cell | 5.23e-11 | 3 |
smooth muscle cell of large intestine | 5.23e-11 | 3 |
smooth muscle cell of colon | 5.23e-11 | 3 |
hepatic stem cell | 2.07e-08 | 2 |
hepatic mesenchymal stem cell | 2.07e-08 | 2 |
smooth muscle cell of prostate | 3.75e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
large intestine | 6.53e-14 | 11 |
intestine | 2.24e-13 | 17 |
hindgut | 3.98e-13 | 19 |
colon | 1.02e-12 | 9 |
cloaca | 1.94e-11 | 14 |
anal region | 1.94e-11 | 14 |
embryonic cloaca | 1.94e-11 | 14 |
terminal part of digestive tract | 1.94e-11 | 14 |
primitive urogenital sinus | 1.94e-11 | 14 |
proctodeum | 1.94e-11 | 14 |
prostate gland | 4.60e-11 | 11 |
male accessory sex gland | 4.60e-11 | 11 |
embryonic cloacal epithelium | 4.60e-11 | 11 |
epithelium of hindgut | 4.60e-11 | 11 |
urogenital sinus epithelium | 4.60e-11 | 11 |
prostate bud | 4.60e-11 | 11 |
prostate field | 4.60e-11 | 11 |
gastrointestinal system | 8.14e-11 | 25 |
genitourinary system | 1.33e-10 | 15 |
sex gland | 4.45e-10 | 12 |
male reproductive gland | 4.45e-10 | 12 |
pons | 8.12e-10 | 3 |
digestive system | 2.49e-07 | 145 |
digestive tract | 2.49e-07 | 145 |
primitive gut | 2.49e-07 | 145 |
subdivision of digestive tract | 2.62e-07 | 118 |
organ system subdivision | 5.09e-07 | 223 |
locus ceruleus | 7.52e-07 | 2 |
brainstem nucleus | 7.52e-07 | 2 |
hindbrain nucleus | 7.52e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.09e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.