FFCP PHASE1:Hg19::chr7:84121917..84121932,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10371|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10723|TSSclassifier=S|UniProt=|association_with_transcript=-52bp_to_ENST00000448879_5end|coexpression_cluster_id=C2002|description=CAGE_peak_20_at_SEMA3A_5end|id=chr7:84121917..84121932,-|ontology_enrichment_celltype=CL:0002620!3.01e-26!23;CL:0000057!1.91e-10!75;CL:0000064!3.72e-09!3;CL:0005012!3.72e-09!3;CL:0000067!3.72e-09!3;CL:0002304!3.72e-09!3|ontology_enrichment_celltype_v019=CL:0002620;3.33e-20;23!CL:0000153;4.84e-14;9!CL:0000447;4.84e-14;9!CL:0000138;4.61e-12;6!CL:0000499;1.31e-09;28!CL:0000327;1.74e-08;15|ontology_enrichment_celltype_v019_2=CL:0002620,3.85e-20,23;CL:0000153,3.12e-14,9;CL:0000447,3.12e-14,9;CL:0000058,2.81e-12,6;CL:0000138,2.81e-12,6;CL:0000499,1.09e-09,28;CL:0000327,1.34e-08,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!6.04e-15!5;DOID:450!6.04e-15!5;DOID:66!6.04e-15!5;DOID:423!6.04e-15!5;DOID:0080000!6.04e-15!5;DOID:11722!6.04e-15!5|ontology_enrichment_disease_v019=DOID:17;4.36e-07;5!DOID:450;4.36e-07;5!DOID:66;4.36e-07;5!DOID:423;4.36e-07;5!DOID:0080000;4.36e-07;5!DOID:11722;4.36e-07;5|ontology_enrichment_disease_v019_2=DOID:17,3.57e-07,5;DOID:450,3.57e-07,5;DOID:66,3.57e-07,5;DOID:423,3.57e-07,5;DOID:0080000,3.57e-07,5;DOID:11722,3.57e-07,5|ontology_enrichment_uberon=UBERON:0002097!3.79e-22!40;UBERON:0002199!4.07e-19!45;UBERON:0002416!4.07e-19!45;UBERON:0000488!1.95e-11!4;UBERON:0003102!2.95e-10!95;UBERON:0001778!3.72e-09!3;UBERON:0001775!3.72e-09!3;UBERON:0007625!2.10e-08!11;UBERON:0002203!1.23e-07!6;UBERON:0001768!1.23e-07!6;UBERON:0000970!1.29e-07!20;UBERON:0002104!3.42e-07!21|ontology_enrichment_uberon_v019=UBERON:0002097;1.89e-10;41!UBERON:0002199;6.51e-10;46!UBERON:0002416;6.51e-10;46!UBERON:0007029;6.98e-09;1|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.08e-13,41;UBERON:0002199,4.65e-12,46;UBERON:0002416,4.65e-12,46;UBERON:0007029,6.72e-09,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,0,1.88300474649071,1.5905718941022,0,0.378139268656271,0.443458794925128,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0.538168907066586,0.213557388818567,1.69545520927649,2.40072876867522,0.618315175430633,2.06112432036503,1.30281799432113,2.36286865137773,0.68205903612839,1.51460264546469,1.01254888506529,1.13152239773168,0.710019185033229,0.705264687593482,0.67824236924195,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08014873822732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5740617341532,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,4.12625773948346,0,0,0,0,0,0,0,0,0,0,0,0,1.25966373927138,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.13096290148613,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,2.86341490414789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0.2506898940227,0.306345576763462,0.327872630709804,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0.511577485214607,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682986574053893,0.266107110487916,0,0,0,0,0,0,0,0,3.36326595976547,0,0,0,0.428859265059938,0,1.62737995515375,1.21700790611806,0,0,0,0,0,0,0,0,2.2910686854405,0,0,0,0,0,0,0,0,1.45713297917742,0,0.596852325484105,3.44868263254949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.83520748281834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0|short_description=p20@SEMA3A}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=10371 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10723 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-52bp_to_ENST00000448879_5end | |||
|coexpression_cluster_id=C2002 | |||
|description=CAGE_peak_20_at_SEMA3A_5end | |||
|id=chr7:84121917..84121932,- | |||
|ontology_enrichment_celltype=CL:0002620!3.01e-26!23;CL:0000057!1.91e-10!75;CL:0000064!3.72e-09!3;CL:0005012!3.72e-09!3;CL:0000067!3.72e-09!3;CL:0002304!3.72e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.33e-20;23!CL:0000153;4.84e-14;9!CL:0000447;4.84e-14;9!CL:0000138;4.61e-12;6!CL:0000499;1.31e-09;28!CL:0000327;1.74e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,3.85e-20,23;CL:0000153,3.12e-14,9;CL:0000447,3.12e-14,9;CL:0000058,2.81e-12,6;CL:0000138,2.81e-12,6;CL:0000499,1.09e-09,28;CL:0000327,1.34e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!6.04e-15!5;DOID:450!6.04e-15!5;DOID:66!6.04e-15!5;DOID:423!6.04e-15!5;DOID:0080000!6.04e-15!5;DOID:11722!6.04e-15!5 | |||
|ontology_enrichment_disease_v019=DOID:17;4.36e-07;5!DOID:450;4.36e-07;5!DOID:66;4.36e-07;5!DOID:423;4.36e-07;5!DOID:0080000;4.36e-07;5!DOID:11722;4.36e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.57e-07,5;DOID:450,3.57e-07,5;DOID:66,3.57e-07,5;DOID:423,3.57e-07,5;DOID:0080000,3.57e-07,5;DOID:11722,3.57e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002097!3.79e-22!40;UBERON:0002199!4.07e-19!45;UBERON:0002416!4.07e-19!45;UBERON:0000488!1.95e-11!4;UBERON:0003102!2.95e-10!95;UBERON:0001778!3.72e-09!3;UBERON:0001775!3.72e-09!3;UBERON:0007625!2.10e-08!11;UBERON:0002203!1.23e-07!6;UBERON:0001768!1.23e-07!6;UBERON:0000970!1.29e-07!20;UBERON:0002104!3.42e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.89e-10;41!UBERON:0002199;6.51e-10;46!UBERON:0002416;6.51e-10;46!UBERON:0007029;6.98e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.08e-13,41;UBERON:0002199,4.65e-12,46;UBERON:0002416,4.65e-12,46;UBERON:0007029,6.72e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,0,1.88300474649071,1.5905718941022,0,0.378139268656271,0.443458794925128,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0.538168907066586,0.213557388818567,1.69545520927649,2.40072876867522,0.618315175430633,2.06112432036503,1.30281799432113,2.36286865137773,0.68205903612839,1.51460264546469,1.01254888506529,1.13152239773168,0.710019185033229,0.705264687593482,0.67824236924195,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08014873822732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5740617341532,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,4.12625773948346,0,0,0,0,0,0,0,0,0,0,0,0,1.25966373927138,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.13096290148613,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,2.86341490414789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0.2506898940227,0.306345576763462,0.327872630709804,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0.511577485214607,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682986574053893,0.266107110487916,0,0,0,0,0,0,0,0,3.36326595976547,0,0,0,0.428859265059938,0,1.62737995515375,1.21700790611806,0,0,0,0,0,0,0,0,2.2910686854405,0,0,0,0,0,0,0,0,1.45713297917742,0,0.596852325484105,3.44868263254949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.83520748281834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p20@SEMA3A | |||
}} |
Revision as of 02:14, 14 September 2013
Short description: | p20@SEMA3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_20_at_SEMA3A_5end |
Coexpression cluster: | C2002_synovial_adrenal_endometrial_gastric_Fibroblast_rectal_small |
Association with transcript: | -52bp_to_ENST00000448879_5end |
EntrezGene: | SEMA3A |
HGNC: | 10723 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 3.85e-20 | 23 |
GAG secreting cell | 3.12e-14 | 9 |
carbohydrate secreting cell | 3.12e-14 | 9 |
chondroblast | 2.81e-12 | 6 |
chondrocyte | 2.81e-12 | 6 |
stromal cell | 1.09e-09 | 28 |
extracellular matrix secreting cell | 1.34e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
skin of body | 1.08e-13 | 41 |
integument | 4.65e-12 | 46 |
integumental system | 4.65e-12 | 46 |
surface | 6.72e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.57e-07 | 5 |
myotonic disease | 3.57e-07 | 5 |
muscle tissue disease | 3.57e-07 | 5 |
myopathy | 3.57e-07 | 5 |
muscular disease | 3.57e-07 | 5 |
myotonic dystrophy | 3.57e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.