FFCP PHASE1:Mm9::chr4:129952786..129952834,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=230779|HGNC=|MCL_coexpression_id=1390|UniProt=Q8C6D8,Q8K0E7,B2KFY2,A3KFV0|association_with_transcript=0bp_to_ENSMUST00000075677,ENSMUST00000105996,ENSMUST00000154846,NM_172702,uc008uzc.1_5end|description=CAGE_peak_1_at_Serinc2_5end|id=chr4:129952786..129952834,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000066,8.16e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.60e-10!43;UBERON:0005409!3.39e-10!59;UBERON:0000344!6.26e-10!15;UBERON:0001242!1.33e-08!13;UBERON:0000060!1.33e-08!13;UBERON:0001262!1.33e-08!13;UBERON:0004786!1.33e-08!13|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.76e-12,31;UBERON:0005409,4.92e-11,47;UBERON:0000344,5.45e-10,15;UBERON:0001242,1.18e-08,13;UBERON:0001262,1.18e-08,13;UBERON:0004786,1.18e-08,13|phase1_expression=26.5847086193958,112.021105852235,131.494780183576,61.0977706839797,72.128985112274,98.8808911561031,91.8097677540416,0,0,0,0,0,0,0,0,0,1.39912375625629,0,0,0,21.941168858976,0,0,161.272362175754,183.068606291602,132.64758371057,140.859172744017,143.503840968802,163.040093893569,116.437919949088,240.35587355035,12.065582795733,6.76571266343027,0,64.125059584783,73.1432439577366,51.0423390655923,0,0,0,0,0,0,0.881277725829041,0.709638518536602,5.13930906052708,2.34717403304412,5.66865406589161,6.15121311656521,2.13872888981712,4.19959264876088,7.18762821824858,0,0,0,1.02903774414379,1.14613375975503,1.54701627683233,24.4802917640113,18.5146842745212,16.4796164911607,29.1406297579454,11.5608323494448,0.449949858640699,0.988866362566974,0,2.39680088414724,3.84218305321555,52.9853918896321,54.9474169009981,51.1089656083858,1.42825492201902,1.54607978666129,30.7451906029535,29.999632428708,27.5765635983006,0,1.91531007127782,0.614426133024974,26.509143833769,21.6825715337711,25.0038417867245,2.51264699101243,0.56276261003168,2.44477196442896,2.35702868378934,1.99320353118744,11.5567656411686,0.908714319998209,1.5870027622425,36.8127900651131,9.46466264679525,9.51959867190851,18.8896117073236,17.5439632710871,7.16843019355737,25.5608844639788,0,0,0,23.802537942259,0,0,0,152.409692871895,158.096556056462,200.693204670869,37.6806803072898,0,1.48442139064825,9.02123699183906,3.95805121805784,1.84492397804847,1.05505848386836,1.99900802130698,0.753999547978053,9.88779870937496,0.144599356919912,2.65383165584962,20.0590893934787,10.3795513676385,8.24287930329878,186.391761218122,27.5213949190854,38.7476407604892,143.566865027228,0.359445373517761,0,0,0.748953197024114,4.11750542536764,18.3455354084782,6.77914848749878,3.58001640262463,1.66230435647648,2.43361894601636,18.6366035846079,23.2641035040874,88.9584109686535,33.8811387977223,14.4433691688601,19.0818746679783,20.8872070574205,11.4535661555143,9.86529237694254,6.66191345481219,7.40243624021858,4.39795730256327,45.053710522964,50.6804294849756,70.0285474172516,54.3605416420386,27.5266776733342,19.1538691587192,15.6394423670037,11.1459189418356,0,0,0,2.89976081549703,4.45599513964083,2.34080679899319,4.7348947117042,1.96764231747404,2.00547246753592,1.39520366850245,1.07309360559848,0.700592054203017,0.987359099480883,0.32833492815819,0.648550476366846,0.438599962275997,0.439100230582101,0.268412837520744,10.0939175310781,17.4937841044784,297.376904685418,146.505613931604,10.6644125267617,6.27039014023184,7.21657783403723,7.86565746031036,10.229390016864,16.5496294717926,89.6859926319127,23.7166494802576,24.6308504624264,31.4351225825018,32.5590025488931,101.566593177927,95.9652941443642,110.125124109665,17.4494468876835,11.5390997735826,22.5415471346161,10.7935203758017,13.1887691273986,17.9547698919216,28.2034955574188,28.4887585600632,22.1368206256338,25.7900072596563,8.89357881261447,1.50160595144485,2.75182593158484,0.449724224769707,1.21716072833102,0.482354319504834,0.50925170356284,2.30156909960649,2.2698931748505,5.21666685057355,2.87536413054709,12.2806512730606,5.30464044294753,7.57736633841335,8.25228102200796,3.85954817090694,25.8654466233247,11.1799932944586,8.14824882210129,5.7713329163564,7.27539769694356,9.88286918906713,10.9500074807566,16.9766273636285,9.61574379047765,13.0664166892777,13.2347457985714,13.764518436122,16.0597033135283,19.238324791341,1.50791283939272,0.54390568381871,45.7340773907704,22.9027499432928,2.24770825982909,1.17211686592203,0,30.2965112645248,0.631016438832513,2.34263246577983,0.646270193198397,0.238968797952552,0.668396022247182,0,1.21443210502468,0.292255857911312,0,1.60660658210904,10.7874464758284,19.0530195923963,19.220661203722,22.6009068472374,34.5137359683903,8.49732226542435,9.06970670894253,6.60117779145643,10.335566250827,9.83792473420568,14.9888410037568,9.08834323693764,12.1209108650805,12.6414703174326,12.6502330289999,14.4389760547462,25.5329704315341,29.5300194211349,38.8076051348264,37.0803070604655,31.2118811210402,21.9393645650547,15.9612549984057,19.1812917942198,8.91752490642099,23.3015277950202,102.986761891667,40.0673594647796,18.8913379234209,23.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| ||
|EntrezGene=230779 | |||
|HGNC= | |||
|MCL_coexpression_id=1390 | |||
|UniProt=Q8C6D8,Q8K0E7,B2KFY2,A3KFV0 | |||
|association_with_transcript=0bp_to_ENSMUST00000075677,ENSMUST00000105996,ENSMUST00000154846,NM_172702,uc008uzc.1_5end | |||
|description=CAGE_peak_1_at_Serinc2_5end | |||
|id=chr4:129952786..129952834,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.16e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.60e-10!43;UBERON:0005409!3.39e-10!59;UBERON:0000344!6.26e-10!15;UBERON:0001242!1.33e-08!13;UBERON:0000060!1.33e-08!13;UBERON:0001262!1.33e-08!13;UBERON:0004786!1.33e-08!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.76e-12,31;UBERON:0005409,4.92e-11,47;UBERON:0000344,5.45e-10,15;UBERON:0001242,1.18e-08,13;UBERON:0001262,1.18e-08,13;UBERON:0004786,1.18e-08,13 | |||
|phase1_expression=26.5847086193958,112.021105852235,131.494780183576,61.0977706839797,72.128985112274,98.8808911561031,91.8097677540416,0,0,0,0,0,0,0,0,0,1.39912375625629,0,0,0,21.941168858976,0,0,161.272362175754,183.068606291602,132.64758371057,140.859172744017,143.503840968802,163.040093893569,116.437919949088,240.35587355035,12.065582795733,6.76571266343027,0,64.125059584783,73.1432439577366,51.0423390655923,0,0,0,0,0,0,0.881277725829041,0.709638518536602,5.13930906052708,2.34717403304412,5.66865406589161,6.15121311656521,2.13872888981712,4.19959264876088,7.18762821824858,0,0,0,1.02903774414379,1.14613375975503,1.54701627683233,24.4802917640113,18.5146842745212,16.4796164911607,29.1406297579454,11.5608323494448,0.449949858640699,0.988866362566974,0,2.39680088414724,3.84218305321555,52.9853918896321,54.9474169009981,51.1089656083858,1.42825492201902,1.54607978666129,30.7451906029535,29.999632428708,27.5765635983006,0,1.91531007127782,0.614426133024974,26.509143833769,21.6825715337711,25.0038417867245,2.51264699101243,0.56276261003168,2.44477196442896,2.35702868378934,1.99320353118744,11.5567656411686,0.908714319998209,1.5870027622425,36.8127900651131,9.46466264679525,9.51959867190851,18.8896117073236,17.5439632710871,7.16843019355737,25.5608844639788,0,0,0,23.802537942259,0,0,0,152.409692871895,158.096556056462,200.693204670869,37.6806803072898,0,1.48442139064825,9.02123699183906,3.95805121805784,1.84492397804847,1.05505848386836,1.99900802130698,0.753999547978053,9.88779870937496,0.144599356919912,2.65383165584962,20.0590893934787,10.3795513676385,8.24287930329878,186.391761218122,27.5213949190854,38.7476407604892,143.566865027228,0.359445373517761,0,0,0.748953197024114,4.11750542536764,18.3455354084782,6.77914848749878,3.58001640262463,1.66230435647648,2.43361894601636,18.6366035846079,23.2641035040874,88.9584109686535,33.8811387977223,14.4433691688601,19.0818746679783,20.8872070574205,11.4535661555143,9.86529237694254,6.66191345481219,7.40243624021858,4.39795730256327,45.053710522964,50.6804294849756,70.0285474172516,54.3605416420386,27.5266776733342,19.1538691587192,15.6394423670037,11.1459189418356,0,0,0,2.89976081549703,4.45599513964083,2.34080679899319,4.7348947117042,1.96764231747404,2.00547246753592,1.39520366850245,1.07309360559848,0.700592054203017,0.987359099480883,0.32833492815819,0.648550476366846,0.438599962275997,0.439100230582101,0.268412837520744,10.0939175310781,17.4937841044784,297.376904685418,146.505613931604,10.6644125267617,6.27039014023184,7.21657783403723,7.86565746031036,10.229390016864,16.5496294717926,89.6859926319127,23.7166494802576,24.6308504624264,31.4351225825018,32.5590025488931,101.566593177927,95.9652941443642,110.125124109665,17.4494468876835,11.5390997735826,22.5415471346161,10.7935203758017,13.1887691273986,17.9547698919216,28.2034955574188,28.4887585600632,22.1368206256338,25.7900072596563,8.89357881261447,1.50160595144485,2.75182593158484,0.449724224769707,1.21716072833102,0.482354319504834,0.50925170356284,2.30156909960649,2.2698931748505,5.21666685057355,2.87536413054709,12.2806512730606,5.30464044294753,7.57736633841335,8.25228102200796,3.85954817090694,25.8654466233247,11.1799932944586,8.14824882210129,5.7713329163564,7.27539769694356,9.88286918906713,10.9500074807566,16.9766273636285,9.61574379047765,13.0664166892777,13.2347457985714,13.764518436122,16.0597033135283,19.238324791341,1.50791283939272,0.54390568381871,45.7340773907704,22.9027499432928,2.24770825982909,1.17211686592203,0,30.2965112645248,0.631016438832513,2.34263246577983,0.646270193198397,0.238968797952552,0.668396022247182,0,1.21443210502468,0.292255857911312,0,1.60660658210904,10.7874464758284,19.0530195923963,19.220661203722,22.6009068472374,34.5137359683903,8.49732226542435,9.06970670894253,6.60117779145643,10.335566250827,9.83792473420568,14.9888410037568,9.08834323693764,12.1209108650805,12.6414703174326,12.6502330289999,14.4389760547462,25.5329704315341,29.5300194211349,38.8076051348264,37.0803070604655,31.2118811210402,21.9393645650547,15.9612549984057,19.1812917942198,8.91752490642099,23.3015277950202,102.986761891667,40.0673594647796,18.8913379234209,23.3411019471963,44.1677672811605,60.2397102064375,77.8253833801701,0.741701208042039,0,4.95328483111734,1.66675074632741,0,0.136694227721025,0.228778173206523,0.509935289981566,0.279902904647316,0.829199842826543,327.452021979184,16.6076396630096,13.419084830372,18.0368919172408,27.1814784818809,32.0992968706881,62.5770567225568,86.9514354230534,125.119340268366,138.299176502343,25.474911836564,0.56369293868419,3.13984746692355,6.12196414691261,14.1949367491155,13.3034618182063,10.8131920314098,10.3274370008263,4.55715346953825,0.524296722128554,0,3.74439008135225,1.26404448251271,13.1771389938607,7.9087437016917,4.54722880422283,4.833720783022,2.78153896693771,2.52410443991935,2.65841148914239,0.807731599585181,1.143102099825,1.00826185136841,1.46186821109629,1.44317762460494,1.63627663054197,29.7016802535927,17.092918409803,9.24052723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| |||
|short_description=p1@Serinc2 | |||
}} | |||
Revision as of 03:55, 14 September 2013
| Short description: | p1@Serinc2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Serinc2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1390 |
| Association with transcript: | 0bp_to_ENSMUST00000075677, ENSMUST00000105996, ENSMUST00000154846, NM_172702, uc008uzc.1_5end |
| EntrezGene: | Serinc2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 8.16e-07 | 25 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 3.76e-12 | 31 |
| gastrointestinal system | 4.92e-11 | 47 |
| mucosa | 5.45e-10 | 15 |
| intestinal mucosa | 1.18e-08 | 13 |
| wall of intestine | 1.18e-08 | 13 |
| gastrointestinal system mucosa | 1.18e-08 | 13 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
