FFCP PHASE1:Mm9::chr6:123210502..123210519,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:123210502..123210519,+|id=chr6:123210502..123210519,+|ontology_enrichment_celltype=CL:0000049!3.54e-20!19;CL:0000557!9.03e-18!7;CL:0000763!1.03e-12!16;CL:0002320!4.23e-12!46;CL:0000134!4.23e-12!46;CL:0000988!3.55e-11!32;CL:0002032!3.55e-11!32;CL:0000037!3.55e-11!32;CL:0000566!3.55e-11!32;CL:0000837!3.55e-11!32;CL:0002092!6.14e-11!3;CL:0002540!6.14e-11!3;CL:0000034!1.24e-10!97;CL:0000219!6.56e-10!54;CL:0002194!2.57e-08!4;CL:0000766!2.57e-08!4;CL:0000576!2.57e-08!4;CL:0000235!2.57e-08!4;CL:0002009!2.57e-08!4;CL:0000040!2.57e-08!4;CL:0000559!2.57e-08!4;CL:0000723!6.85e-08!91;CL:0000048!6.85e-08!91;CL:0000144!9.32e-08!121;CL:0000012!9.32e-08!121;CL:0000063!1.27e-07!66|ontology_enrichment_celltype_v019_2=CL:0000557,1.65e-18,7;CL:0000049,1.81e-16,19;CL:0002092,1.83e-15,3;CL:0002540,1.83e-15,3;CL:0002320,6.47e-12,46;CL:0000134,6.47e-12,46;CL:0002476,3.04e-11,2;CL:0000219,6.33e-10,54;CL:0000988,2.03e-09,32;CL:0002032,2.03e-09,32;CL:0000037,2.03e-09,32;CL:0000837,2.03e-09,32;CL:0000723,3.24e-09,91;CL:0000048,3.24e-09,91;CL:0000034,1.61e-08,97;CL:0000763,4.82e-08,16|ontology_enrichment_disease=DOID:0060100!5.96e-12!3;DOID:4045!5.96e-12!3|ontology_enrichment_disease_v019_2=DOID:0060100,5.76e-17,3;DOID:4045,5.76e-17,3;DOID:0050686,9.55e-09,6|ontology_enrichment_uberon=UBERON:0002371!3.64e-24!16;UBERON:0002204!6.80e-19!32;UBERON:0001474!4.85e-17!22;UBERON:0004765!4.85e-17!22;UBERON:0001434!4.85e-17!22;UBERON:0002384!4.23e-12!46;UBERON:0002390!2.50e-07!45;UBERON:0003061!2.50e-07!45;UBERON:0002193!9.45e-07!48|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.55e-19,16;UBERON:0002204,3.69e-18,32;UBERON:0001474,5.57e-14,22;UBERON:0004765,5.57e-14,22;UBERON:0001434,5.57e-14,22;UBERON:0002384,6.47e-12,46|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0.42438965179803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.7412652294763,15.626706890476,5.23523743973798,92.9405751089003,25.9557284284209,15.5363312969969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3498495759221,1.97773272513395,2.1314403448383,0.299600110518405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55759661857696,5.99902730993408,1.77898317902291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.61770549850588,3.86021860672073,2.27330799516474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01582567878545,2.17562273527484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679913719975421,0.419854356970974,0.414599921413271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr6:123210502..123210519,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:123210502..123210519,+ | |||
|id=chr6:123210502..123210519,+ | |||
|ontology_enrichment_celltype=CL:0000049!3.54e-20!19;CL:0000557!9.03e-18!7;CL:0000763!1.03e-12!16;CL:0002320!4.23e-12!46;CL:0000134!4.23e-12!46;CL:0000988!3.55e-11!32;CL:0002032!3.55e-11!32;CL:0000037!3.55e-11!32;CL:0000566!3.55e-11!32;CL:0000837!3.55e-11!32;CL:0002092!6.14e-11!3;CL:0002540!6.14e-11!3;CL:0000034!1.24e-10!97;CL:0000219!6.56e-10!54;CL:0002194!2.57e-08!4;CL:0000766!2.57e-08!4;CL:0000576!2.57e-08!4;CL:0000235!2.57e-08!4;CL:0002009!2.57e-08!4;CL:0000040!2.57e-08!4;CL:0000559!2.57e-08!4;CL:0000723!6.85e-08!91;CL:0000048!6.85e-08!91;CL:0000144!9.32e-08!121;CL:0000012!9.32e-08!121;CL:0000063!1.27e-07!66 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.65e-18,7;CL:0000049,1.81e-16,19;CL:0002092,1.83e-15,3;CL:0002540,1.83e-15,3;CL:0002320,6.47e-12,46;CL:0000134,6.47e-12,46;CL:0002476,3.04e-11,2;CL:0000219,6.33e-10,54;CL:0000988,2.03e-09,32;CL:0002032,2.03e-09,32;CL:0000037,2.03e-09,32;CL:0000837,2.03e-09,32;CL:0000723,3.24e-09,91;CL:0000048,3.24e-09,91;CL:0000034,1.61e-08,97;CL:0000763,4.82e-08,16 | |||
|ontology_enrichment_disease=DOID:0060100!5.96e-12!3;DOID:4045!5.96e-12!3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,5.76e-17,3;DOID:4045,5.76e-17,3;DOID:0050686,9.55e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0002371!3.64e-24!16;UBERON:0002204!6.80e-19!32;UBERON:0001474!4.85e-17!22;UBERON:0004765!4.85e-17!22;UBERON:0001434!4.85e-17!22;UBERON:0002384!4.23e-12!46;UBERON:0002390!2.50e-07!45;UBERON:0003061!2.50e-07!45;UBERON:0002193!9.45e-07!48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.55e-19,16;UBERON:0002204,3.69e-18,32;UBERON:0001474,5.57e-14,22;UBERON:0004765,5.57e-14,22;UBERON:0001434,5.57e-14,22;UBERON:0002384,6.47e-12,46 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0.42438965179803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.7412652294763,15.626706890476,5.23523743973798,92.9405751089003,25.9557284284209,15.5363312969969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3498495759221,1.97773272513395,2.1314403448383,0.299600110518405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55759661857696,5.99902730993408,1.77898317902291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.61770549850588,3.86021860672073,2.27330799516474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01582567878545,2.17562273527484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679913719975421,0.419854356970974,0.414599921413271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:123210502..123210519,+ | |||
}} |
Revision as of 08:48, 14 September 2013
Short description: | p@chr6:123210502..123210519, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:123210502..123210519, + |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.65e-18 | 7 |
common myeloid progenitor | 1.81e-16 | 19 |
bone marrow cell | 1.83e-15 | 3 |
mesenchymal stem cell of the bone marrow | 1.83e-15 | 3 |
connective tissue cell | 6.47e-12 | 46 |
mesenchymal cell | 6.47e-12 | 46 |
bone marrow macrophage | 3.04e-11 | 2 |
motile cell | 6.33e-10 | 54 |
hematopoietic cell | 2.03e-09 | 32 |
hematopoietic oligopotent progenitor cell | 2.03e-09 | 32 |
hematopoietic stem cell | 2.03e-09 | 32 |
hematopoietic multipotent progenitor cell | 2.03e-09 | 32 |
somatic stem cell | 3.24e-09 | 91 |
multi fate stem cell | 3.24e-09 | 91 |
stem cell | 1.61e-08 | 97 |
myeloid cell | 4.82e-08 | 16 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.55e-19 | 16 |
musculoskeletal system | 3.69e-18 | 32 |
bone element | 5.57e-14 | 22 |
skeletal element | 5.57e-14 | 22 |
skeletal system | 5.57e-14 | 22 |
connective tissue | 6.47e-12 | 46 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 5.76e-17 | 3 |
muscle cancer | 5.76e-17 | 3 |
organ system cancer | 9.55e-09 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.