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{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,0,0,

Latest revision as of 10:21, 17 September 2013


Full id: C63_neuroectodermal_neuroblastoma_carcinoid_peripheral_chronic_neuroepithelioma_acute



Phase1 CAGE Peaks

Hg19::chr10:111206783..111206811,-p@chr10:111206783..111206811
-
Hg19::chr10:118925618..118925644,+p@chr10:118925618..118925644
+
Hg19::chr10:24738547..24738558,+p39@KIAA1217
Hg19::chr10:24738565..24738572,+p31@KIAA1217
Hg19::chr10:26963823..26963831,-p@chr10:26963823..26963831
-
Hg19::chr10:26964666..26964680,-p@chr10:26964666..26964680
-
Hg19::chr10:26964681..26964713,-p@chr10:26964681..26964713
-
Hg19::chr10:26982001..26982005,-p@chr10:26982001..26982005
-
Hg19::chr10:26982008..26982009,-p@chr10:26982008..26982009
-
Hg19::chr10:26982049..26982055,-p@chr10:26982049..26982055
-
Hg19::chr10:26982078..26982094,-p@chr10:26982078..26982094
-
Hg19::chr10:50845601..50845602,+p@chr10:50845601..50845602
+
Hg19::chr10:71812337..71812348,+p4@H2AFY2
Hg19::chr11:15095131..15095148,+p1@CALCB
Hg19::chr11:16929898..16929926,+p@chr11:16929898..16929926
+
Hg19::chr11:16930367..16930371,-p@chr11:16930367..16930371
-
Hg19::chr11:36397528..36397545,+p5@PRR5L
Hg19::chr11:83248847..83248851,-p@chr11:83248847..83248851
-
Hg19::chr11:83381420..83381424,-p@chr11:83381420..83381424
-
Hg19::chr11:83429564..83429567,-p@chr11:83429564..83429567
-
Hg19::chr11:83462939..83462942,-p@chr11:83462939..83462942
-
Hg19::chr11:83463186..83463229,-p@chr11:83463186..83463229
-
Hg19::chr12:45444635..45444645,-p2@AB463567
Hg19::chr12:54071246..54071256,-p16@ATP5G2
Hg19::chr12:54982726..54982737,-p7@PPP1R1A
Hg19::chr12:54982916..54982965,-p5@PPP1R1A
Hg19::chr12:54983003..54983015,-p@chr12:54983003..54983015
-
Hg19::chr12:54984720..54984736,-p@chr12:54984720..54984736
-
Hg19::chr12:57853671..57853678,+p7@GLI1
Hg19::chr12:71551821..71551832,-p9@TSPAN8
Hg19::chr12:71551836..71551847,-p6@TSPAN8
Hg19::chr12:71551868..71551882,-p4@TSPAN8
Hg19::chr12:85817900..85817937,+p@chr12:85817900..85817937
+
Hg19::chr12:96223975..96224010,-p@chr12:96223975..96224010
-
Hg19::chr13:33760131..33760177,-p13@STARD13
Hg19::chr13:34119812..34119836,+p@chr13:34119812..34119836
+
Hg19::chr13:34119899..34119908,+p@chr13:34119899..34119908
+
Hg19::chr13:34125754..34125755,+p@chr13:34125754..34125755
+
Hg19::chr13:39627175..39627209,+p@chr13:39627175..39627209
+
Hg19::chr13:39632439..39632441,+p@chr13:39632439..39632441
+
Hg19::chr13:39634182..39634185,+p@chr13:39634182..39634185
+
Hg19::chr13:46541906..46541930,+p@chr13:46541906..46541930
+
Hg19::chr13:46569145..46569147,-p@chr13:46569145..46569147
-
Hg19::chr13:46584866..46584872,-p@chr13:46584866..46584872
-
Hg19::chr13:46619549..46619573,-p28@ZC3H13
Hg19::chr13:64423563..64423566,+p@chr13:64423563..64423566
+
Hg19::chr13:64509909..64509912,-p@chr13:64509909..64509912
-
Hg19::chr13:64544810..64544814,-p@chr13:64544810..64544814
-
Hg19::chr13:64571340..64571360,-p@chr13:64571340..64571360
-
Hg19::chr13:64576947..64576951,-p@chr13:64576947..64576951
-
Hg19::chr13:64621349..64621351,-p@chr13:64621349..64621351
-
Hg19::chr13:64623751..64623759,-p@chr13:64623751..64623759
-
Hg19::chr13:64660079..64660090,-p@chr13:64660079..64660090
-
Hg19::chr13:64665583..64665584,-p@chr13:64665583..64665584
-
Hg19::chr14:22110852..22110865,+p2@TRAV1-2
Hg19::chr14:22125499..22125501,+p@chr14:22125499..22125501
+
Hg19::chr15:67841421..67841444,+p3@MAP2K5
Hg19::chr15:69552615..69552618,+p3@GLCE
Hg19::chr15:73126151..73126159,+p@chr15:73126151..73126159
+
Hg19::chr16:10625151..10625157,+p@chr16:10625151..10625157
+
Hg19::chr16:2069979..2069989,+p7@NPW
Hg19::chr16:2070117..2070143,+p3@NPW
Hg19::chr16:23194058..23194081,+p1@SCNN1G
Hg19::chr16:23194084..23194089,+p3@SCNN1G
Hg19::chr16:52484431..52484432,-p@chr16:52484431..52484432
-
Hg19::chr16:52484451..52484459,-p@chr16:52484451..52484459
-
Hg19::chr16:61785282..61785286,-p@chr16:61785282..61785286
-
Hg19::chr16:62039635..62039639,-p@chr16:62039635..62039639
-
Hg19::chr16:62070523..62070533,+p@chr16:62070523..62070533
+
Hg19::chr17:1374109..1374123,-p@chr17:1374109..1374123
-
Hg19::chr17:39886117..39886121,-p@chr17:39886117..39886121
-
Hg19::chr17:47107522..47107524,+p@chr17:47107522..47107524
+
Hg19::chr17:7080227..7080234,-p@chr17:7080227..7080234
-
Hg19::chr18:44059721..44059726,-p@chr18:44059721..44059726
-
Hg19::chr18:44144365..44144377,-p@chr18:44144365..44144377
-
Hg19::chr18:44144769..44144787,-p@chr18:44144769..44144787
-
Hg19::chr18:44177670..44177690,-p@chr18:44177670..44177690
-
Hg19::chr18:44178464..44178472,-p@chr18:44178464..44178472
-
Hg19::chr18:44181300..44181314,-p4@LOXHD1
Hg19::chr18:44181390..44181399,-p9@LOXHD1
Hg19::chr18:61011137..61011152,-p@chr18:61011137..61011152
-
Hg19::chr18:65175930..65175941,+p@chr18:65175930..65175941
+
Hg19::chr19:14294913..14294923,-p7@LPHN1
Hg19::chr19:15619328..15619352,+p1@CYP4F22
Hg19::chr19:40459260..40459307,-p@chr19:40459260..40459307
-
Hg19::chr19:41105562..41105622,+p9@LTBP4
Hg19::chr19:42070987..42071007,+p5@CEACAM21
Hg19::chr19:50023404..50023409,+p@chr19:50023404..50023409
+
Hg19::chr19:51228306..51228323,+p@chr19:51228306..51228323
+
Hg19::chr19:56109119..56109129,-p6@FIZ1
Hg19::chr1:115428653..115428662,+p@chr1:115428653..115428662
+
Hg19::chr1:116621505..116621514,+p@chr1:116621505..116621514
+
Hg19::chr1:12851545..12851549,+p1@PRAMEF1
Hg19::chr1:185827764..185827769,+p@chr1:185827764..185827769
+
Hg19::chr1:209866247..209866284,-p@chr1:209866247..209866284
-
Hg19::chr1:38535039..38535040,+p@chr1:38535039..38535040
+
Hg19::chr1:60312321..60312327,+p@chr1:60312321..60312327
+
Hg19::chr20:21491940..21491947,-p@chr20:21491940..21491947
-
Hg19::chr20:21492799..21492805,-p@chr20:21492799..21492805
-
Hg19::chr20:21493012..21493016,-p@chr20:21493012..21493016
-
Hg19::chr20:21494424..21494431,-p11@NKX2-2
Hg19::chr20:21502457..21502466,-p@chr20:21502457..21502466
-
Hg19::chr20:21502470..21502487,-p@chr20:21502470..21502487
-
Hg19::chr20:21502506..21502511,-p@chr20:21502506..21502511
-
Hg19::chr20:21502663..21502686,+p@chr20:21502663..21502686
+
Hg19::chr20:32781934..32781950,+p1@AY805391
Hg19::chr20:32782363..32782373,+p2@AY805391
Hg19::chr20:4218104..4218108,-p@chr20:4218104..4218108
-
Hg19::chr20:4221072..4221074,+p@chr20:4221072..4221074
+
Hg19::chr20:4228567..4228605,-p@chr20:4228567..4228605
-
Hg19::chr20:4228968..4229010,-p3@ADRA1D
Hg19::chr20:4229240..4229260,-p2@ADRA1D
Hg19::chr20:4229282..4229295,-p5@ADRA1D
Hg19::chr20:4229299..4229313,-p7@ADRA1D
Hg19::chr20:4229843..4229952,-p1@ADRA1D
Hg19::chr20:4230654..4230665,-p@chr20:4230654..4230665
-
Hg19::chr20:4230672..4230694,-p@chr20:4230672..4230694
-
Hg19::chr20:4230701..4230709,-p@chr20:4230701..4230709
-
Hg19::chr20:49308501..49308532,-p8@FAM65C
Hg19::chr20:61404383..61404401,-p@chr20:61404383..61404401
-
Hg19::chr21:15583165..15583170,-p6@LIPI
Hg19::chr21:15583180..15583186,-p4@LIPI
Hg19::chr21:15583200..15583207,-p8@LIPI
Hg19::chr21:15583221..15583230,-p3@LIPI
Hg19::chr21:15583237..15583266,-p1@LIPI
Hg19::chr21:15583269..15583281,-p2@LIPI
Hg19::chr21:15588468..15588491,+p1@RBM11
Hg19::chr21:15588504..15588515,+p2@RBM11
Hg19::chr21:46312095..46312102,-p@chr21:46312095..46312102
-
Hg19::chr21:46351269..46351296,+p@chr21:46351269..46351296
+
Hg19::chr2:119916540..119916545,-p10@C1QL2
Hg19::chr2:134205819..134205821,-p@chr2:134205819..134205821
-
Hg19::chr2:134239813..134239815,+p@chr2:134239813..134239815
+
Hg19::chr2:139464660..139464663,-p@chr2:139464660..139464663
-
Hg19::chr2:139535391..139535401,-p@chr2:139535391..139535401
-
Hg19::chr2:139576341..139576349,+p@chr2:139576341..139576349
+
Hg19::chr2:139576373..139576380,+p@chr2:139576373..139576380
+
Hg19::chr2:139576411..139576412,+p@chr2:139576411..139576412
+
Hg19::chr2:139576476..139576483,+p@chr2:139576476..139576483
+
Hg19::chr2:139576487..139576519,+p@chr2:139576487..139576519
+
Hg19::chr2:226635283..226635296,+p@chr2:226635283..226635296
+
Hg19::chr2:242742159..242742162,+p@chr2:242742159..242742162
+
Hg19::chr2:242742205..242742253,+p@chr2:242742205..242742253
+
Hg19::chr2:242742527..242742558,+p@chr2:242742527..242742558
+
Hg19::chr2:242742749..242742760,+p@chr2:242742749..242742760
+
Hg19::chr2:4634459..4634466,+p@chr2:4634459..4634466
+
Hg19::chr2:65943147..65943155,+p@chr2:65943147..65943155
+
Hg19::chr2:66130511..66130515,+p@chr2:66130511..66130515
+
Hg19::chr2:66316023..66316027,+p@chr2:66316023..66316027
+
Hg19::chr2:66323027..66323032,+p@chr2:66323027..66323032
+
Hg19::chr2:66357547..66357551,+p@chr2:66357547..66357551
+
Hg19::chr2:66419166..66419170,+p@chr2:66419166..66419170
+
Hg19::chr2:72742849..72742865,-p9@EXOC6B
Hg19::chr2:72742867..72742891,-p5@EXOC6B
Hg19::chr2:72803155..72803204,-p@chr2:72803155..72803204
-
Hg19::chr3:131712314..131712315,-p@chr3:131712314..131712315
-
Hg19::chr3:193615743..193615750,-p@chr3:193615743..193615750
-
Hg19::chr3:197839227..197839233,+p@chr3:197839227..197839233
+
Hg19::chr3:45000781..45000790,-p11@ZDHHC3
Hg19::chr3:58196782..58196793,-p6@DNASE1L3
Hg19::chr3:58223285..58223315,+p2@ABHD6
Hg19::chr3:58232782..58232783,+p@chr3:58232782..58232783
+
Hg19::chr3:58237978..58237982,+p@chr3:58237978..58237982
+
Hg19::chr3:58256724..58256748,+p@chr3:58256724..58256748
+
Hg19::chr3:58257517..58257519,+p@chr3:58257517..58257519
+
Hg19::chr3:5932029..5932056,+p@chr3:5932029..5932056
+
Hg19::chr3:8407351..8407367,-p@chr3:8407351..8407367
-
Hg19::chr3:87841697..87841709,+p@chr3:87841697..87841709
+
Hg19::chr3:87844161..87844162,+p@chr3:87844161..87844162
+
Hg19::chr3:87876229..87876244,+p@chr3:87876229..87876244
+
Hg19::chr3:87902130..87902132,+p@chr3:87902130..87902132
+
Hg19::chr3:87943735..87943737,+p@chr3:87943735..87943737
+
Hg19::chr3:87966011..87966035,+p@chr3:87966011..87966035
+
Hg19::chr3:88008933..88008934,+p@chr3:88008933..88008934
+
Hg19::chr4:107844767..107844791,-p@chr4:107844767..107844791
-
Hg19::chr4:107845253..107845259,-p@chr4:107845253..107845259
-
Hg19::chr4:107899943..107899948,-p@chr4:107899943..107899948
-
Hg19::chr4:107904729..107904737,-p@chr4:107904729..107904737
-
Hg19::chr4:107906970..107906973,-p@chr4:107906970..107906973
-
Hg19::chr4:107956614..107956616,-p15@DKK2
Hg19::chr4:107957287..107957289,-p11@DKK2
Hg19::chr4:107957459..107957475,-p1@DKK2
Hg19::chr4:115763770..115763775,-p@chr4:115763770..115763775
-
Hg19::chr4:115788798..115788803,-p@chr4:115788798..115788803
-
Hg19::chr4:116033354..116033355,-p@chr4:116033354..116033355
-
Hg19::chr4:122302163..122302176,-p2@QRFPR
Hg19::chr4:155299368..155299375,-p@chr4:155299368..155299375
-
Hg19::chr4:160461460..160461489,+p@chr4:160461460..160461489
+
Hg19::chr4:160698976..160699011,-p1@ENST00000513718
Hg19::chr4:76008729..76008736,-p@chr4:76008729..76008736
-
Hg19::chr4:8068231..8068247,+p1@ENST00000510640
Hg19::chr4:85413968..85413983,-p@chr4:85413968..85413983
-
Hg19::chr4:85415324..85415327,-p@chr4:85415324..85415327
-
Hg19::chr4:85419242..85419289,-p4@NKX6-1
Hg19::chr4:85420434..85420451,-p@chr4:85420434..85420451
-
Hg19::chr4:85420484..85420519,-p@chr4:85420484..85420519
-
Hg19::chr5:147155942..147155948,+p@chr5:147155942..147155948
+
Hg19::chr5:173926912..173926925,+p@chr5:173926912..173926925
+
Hg19::chr5:24554148..24554153,+p1@ENST00000510391
Hg19::chr5:24572712..24572714,+p@chr5:24572712..24572714
+
Hg19::chr5:36035968..36035971,-p@chr5:36035968..36035971
-
Hg19::chr5:74350331..74350341,-p@chr5:74350331..74350341
-
Hg19::chr5:74350347..74350358,-p@chr5:74350347..74350358
-
Hg19::chr5:74350379..74350390,-p@chr5:74350379..74350390
-
Hg19::chr6:110678484..110678522,-p@chr6:110678484..110678522
-
Hg19::chr6:123317255..123317260,+p5@CLVS2
Hg19::chr6:20772000..20772005,+p@chr6:20772000..20772005
+
Hg19::chr6:84132857..84132870,-p@chr6:84132857..84132870
-
Hg19::chr6:84222196..84222218,+p2@PRSS35
Hg19::chr6:84222220..84222266,+p1@PRSS35
Hg19::chr6:84233451..84233458,+p4@PRSS35
Hg19::chr6:84233618..84233629,+p3@PRSS35
Hg19::chr6:84233812..84233858,-p@chr6:84233812..84233858
-
Hg19::chr6:98661843..98661846,-p@chr6:98661843..98661846
-
Hg19::chr6:98716530..98716546,-p@chr6:98716530..98716546
-
Hg19::chr7:128026674..128026687,+p@chr7:128026674..128026687
+
Hg19::chr8:12808720..12808732,+p19@KIAA1456
Hg19::chr8:21341398..21341404,-p@chr8:21341398..21341404
-
Hg19::chr8:21407243..21407248,+p@chr8:21407243..21407248
+
Hg19::chr8:21407882..21407904,+p@chr8:21407882..21407904
+
Hg19::chr8:27009314..27009357,-p@chr8:27009314..27009357
-
Hg19::chr8:27035585..27035590,-p@chr8:27035585..27035590
-
Hg19::chr8:27046735..27046767,-p@chr8:27046735..27046767
-
Hg19::chr8:27046803..27046810,-p@chr8:27046803..27046810
-
Hg19::chr8:27048180..27048185,-p@chr8:27048180..27048185
-
Hg19::chr8:27048221..27048224,-p@chr8:27048221..27048224
-
Hg19::chr8:27048244..27048247,-p@chr8:27048244..27048247
-
Hg19::chr8:27050096..27050107,+p@chr8:27050096..27050107
+
Hg19::chr8:27057116..27057118,+p@chr8:27057116..27057118
+
Hg19::chr8:37809068..37809069,-p@chr8:37809068..37809069
-
Hg19::chr8:37824009..37824022,-p3@ADRB3
Hg19::chr8:37824071..37824078,-p5@ADRB3
Hg19::chr8:5838166..5838170,-p@chr8:5838166..5838170
-
Hg19::chr8:5839197..5839199,-p@chr8:5839197..5839199
-
Hg19::chr8:5903875..5903879,-p@chr8:5903875..5903879
-
Hg19::chr8:5942340..5942343,-p@chr8:5942340..5942343
-
Hg19::chr8:6185011..6185028,-p@chr8:6185011..6185028
-
Hg19::chr8:6185038..6185049,-p@chr8:6185038..6185049
-
Hg19::chr8:6185135..6185168,-p@chr8:6185135..6185168
-
Hg19::chr8:70666237..70666240,-p@chr8:70666237..70666240
-
Hg19::chr8:70675847..70675848,-p@chr8:70675847..70675848
-
Hg19::chr8:70744711..70744752,-p6@SLCO5A1
Hg19::chr8:70745575..70745596,-p1@SLCO5A1
Hg19::chr8:73163971..73163975,-p1@LOC392232
Hg19::chr8:81787186..81787198,-p9@ZNF704
Hg19::chr9:137978774..137978811,+p30@OLFM1
Hg19::chr9:14602923..14602929,-p@chr9:14602923..14602929
-
Hg19::chr9:14674313..14674355,-p8@ZDHHC21
Hg19::chr9:14677386..14677415,-p@chr9:14677386..14677415
-
Hg19::chr9:14677474..14677512,-p@chr9:14677474..14677512
-
Hg19::chr9:14678067..14678075,-p@chr9:14678067..14678075
-
Hg19::chr9:14688385..14688386,-p@chr9:14688385..14688386
-
Hg19::chr9:15883050..15883085,+p@chr9:15883050..15883085
+
Hg19::chr9:15883093..15883094,+p@chr9:15883093..15883094
+
Hg19::chr9:15883095..15883109,+p@chr9:15883095..15883109
+
Hg19::chr9:15883133..15883144,+p@chr9:15883133..15883144
+
Hg19::chr9:15885823..15885844,+p@chr9:15885823..15885844
+
Hg19::chr9:15888972..15888976,+p@chr9:15888972..15888976
+
Hg19::chr9:15890540..15890543,+p@chr9:15890540..15890543
+
Hg19::chr9:15892544..15892549,+p@chr9:15892544..15892549
+
Hg19::chr9:15946761..15946763,+p@chr9:15946761..15946763
+
Hg19::chr9:15957043..15957045,+p@chr9:15957043..15957045
+
Hg19::chr9:15995588..15995594,+p@chr9:15995588..15995594
+
Hg19::chr9:15996440..15996443,+p@chr9:15996440..15996443
+
Hg19::chr9:16001854..16001855,+p@chr9:16001854..16001855
+
Hg19::chr9:16002153..16002156,+p@chr9:16002153..16002156
+
Hg19::chr9:16059821..16059828,+p@chr9:16059821..16059828
+
Hg19::chr9:4644181..4644182,-p@chr9:4644181..4644182
-
Hg19::chrX:19049137..19049154,-p@chrX:19049137..19049154
-
Hg19::chrX:19083377..19083380,-p@chrX:19083377..19083380
-
Hg19::chrX:19123031..19123034,-p@chrX:19123031..19123034
-
Hg19::chrX:19134622..19134626,-p@chrX:19134622..19134626
-
Hg19::chrX:2712446..2712461,+p10@XG
Hg19::chrX:2712489..2712498,+p13@XG
Hg19::chrX:50437571..50437573,+p@chrX:50437571..50437573
+
Hg19::chrX:52006941..52006949,+p@chrX:52006941..52006949
+
Hg19::chrX:52006984..52006993,+p@chrX:52006984..52006993
+
Hg19::chrX:78421956..78421957,+p@chrX:78421956..78421957
+
Hg19::chrX:78616329..78616343,-p5@ITM2A
Hg19::chrX:78616347..78616353,-p15@ITM2A
Hg19::chrX:78616426..78616443,-p6@ITM2A
Hg19::chrX:78618975..78618988,-p12@ITM2A
Hg19::chrX:78619026..78619031,-p17@ITM2A
Hg19::chrX:78622778..78622789,-p2@ITM2A
Hg19::chrX:78622805..78622877,-p1@ITM2A


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0035270endocrine system development0.0043293220398306
GO:0031018endocrine pancreas development0.00557948874864658
GO:0031016pancreas development0.0111266135093363
GO:0004935adrenoceptor activity0.0194010302175535
GO:0016524latrotoxin receptor activity0.0371813469951779
GO:0010001glial cell differentiation0.0495062055925629



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
sympathetic nervous system3.49e-095
autonomic nervous system3.49e-095
Disease
Ontology termp-valuen
neuroectodermal tumor2.97e-6310
germ cell and embryonal cancer2.73e-2922
germ cell cancer2.73e-2922
neuroendocrine tumor7.25e-086


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.01371
MA0006.10.00155721
MA0007.10.00153232
MA0009.10.747083
MA0014.19.48471e-10
MA0017.10.0220951
MA0019.11.01544
MA0024.10.00799295
MA0025.10.192836
MA0027.11.00226
MA0028.18.10463e-06
MA0029.10.175873
MA0030.10.633743
MA0031.10.27666
MA0038.10.0509277
MA0040.10.314691
MA0041.14.26981
MA0042.12.14295
MA0043.10.0257188
MA0046.10.0716329
MA0048.10.000218863
MA0050.12.4179
MA0051.10.136911
MA0052.10.497712
MA0055.13.32171e-07
MA0056.10
MA0057.10.166719
MA0058.10.00812435
MA0059.10.095964
MA0060.12.46974e-07
MA0061.10.0301419
MA0063.10
MA0066.10.00454875
MA0067.10.0552146
MA0068.10.815492
MA0069.10.965131
MA0070.11.55733
MA0071.10.387058
MA0072.10.897097
MA0073.13.16861e-10
MA0074.10.407259
MA0076.15.1449e-05
MA0077.10.409508
MA0078.11.39012
MA0081.10.325525
MA0083.10.182677
MA0084.10.40217
MA0087.10.422485
MA0088.10.625614
MA0089.10
MA0090.10.0332773
MA0091.10.0805013
MA0092.10.275234
MA0093.10.00359176
MA0095.10
MA0098.10
MA0100.10.0330607
MA0101.10.0791291
MA0103.10.144502
MA0105.10.00345379
MA0106.10.0918788
MA0107.10.423702
MA0108.20.586002
MA0109.10
MA0111.10.156044
MA0113.10.700215
MA0114.10.00038721
MA0115.10.596456
MA0116.10.0302647
MA0117.10.0360614
MA0119.10.7341
MA0122.10.125251
MA0124.10.505971
MA0125.10.866598
MA0130.10
MA0131.10.0680589
MA0132.10
MA0133.10
MA0135.10.859862
MA0136.10.0295056
MA0139.10.00169817
MA0140.10.0469466
MA0141.10.0138587
MA0142.11.39325
MA0143.11.3436
MA0144.10.139197
MA0145.16.16343e-05
MA0146.16.60692e-11
MA0147.10.00290542
MA0148.11.24003
MA0149.1228.907
MA0062.27.54656e-09
MA0035.20.024555
MA0039.23.77778e-09
MA0138.20.269619
MA0002.20.0586955
MA0137.20.08159
MA0104.20.000721161
MA0047.22.46863
MA0112.21.13305e-07
MA0065.20.0088228
MA0150.10.0288778
MA0151.10
MA0152.10.675098
MA0153.10.157155
MA0154.10.00270941
MA0155.10.0092366
MA0156.10.00799275
MA0157.10.392719
MA0158.10
MA0159.10.00158759
MA0160.10.0320374
MA0161.10
MA0162.14.65743e-05
MA0163.12.78365e-05
MA0164.10.130824
MA0080.20.020386
MA0018.20.154448
MA0099.20.0527786
MA0079.24.88239e-13
MA0102.20.146428
MA0258.10.057562
MA0259.10.00430292
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
SUZ12#23512162.81351752483160.000236614724682520.00257736808835187



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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