FFCP PHASE1:Hg19::chr16:3071939..3071959,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr16:3071939..3071959,+ | |||
|id=chr16:3071939..3071959,+ | |||
|ontology_enrichment_celltype=CL:0000548!3.84e-24!679;CL:0000004!3.84e-24!679;CL:0000255!3.84e-24!679;CL:0000012!2.17e-23!682;CL:0000055!5.30e-20!180;CL:0000220!5.76e-18!246;CL:0002321!9.45e-18!248;CL:0000144!8.92e-17!625;CL:0000003!7.73e-15!722;CL:0000066!1.80e-13!254;CL:0002371!4.89e-13!591;CL:0000063!2.80e-11!578;CL:0000057!1.99e-10!75;CL:0000222!5.01e-10!119;CL:0000680!5.32e-09!57;CL:0000056!5.32e-09!57;CL:0000355!5.32e-09!57;CL:0000393!5.85e-09!60;CL:0000211!5.85e-09!60;CL:0000192!3.00e-08!42;CL:0000514!3.00e-08!42;CL:0000187!3.93e-08!54;CL:0000183!1.55e-07!59;CL:0000359!2.56e-07!32;CL:0000499!4.07e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.87e-08;32!CL:0000192;7.57e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.21e-11,250;CL:0000192,6.80e-09,43;CL:0000514,6.80e-09,43;CL:0000680,9.74e-09,58;CL:0000056,9.74e-09,58;CL:0000355,9.74e-09,58;CL:0000359,3.13e-08,32;CL:0000393,4.19e-08,61;CL:0000211,4.19e-08,61;CL:0000187,7.87e-08,55;CL:0000222,1.42e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;7.57e-07;43 | |||
|ontology_enrichment_disease=DOID:193!8.89e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;6.93e-09;14!DOID:120;1.29e-07;27!DOID:193;8.31e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.12e-08,14;DOID:120,1.11e-07,27;DOID:193,7.24e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000486!1.52e-09!82;UBERON:0000914!7.98e-09!83;UBERON:0002329!7.98e-09!83;UBERON:0003077!7.98e-09!83;UBERON:0003059!7.98e-09!83;UBERON:0007282!7.98e-09!83;UBERON:0009618!7.98e-09!83;UBERON:0007285!7.98e-09!83;UBERON:0004290!3.04e-08!70;UBERON:0001637!3.92e-08!42;UBERON:0003509!3.92e-08!42;UBERON:0004572!3.92e-08!42;UBERON:0001134!6.77e-08!61;UBERON:0002036!6.77e-08!61;UBERON:0003082!6.77e-08!61;UBERON:0005256!1.40e-07!143;UBERON:0002385!3.72e-07!63;UBERON:0001015!3.72e-07!63;UBERON:0000383!3.72e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.12e-08,78;UBERON:0001637,8.53e-08,42;UBERON:0003509,8.53e-08,42;UBERON:0004572,8.53e-08,42;UBERON:0001134,1.07e-07,62;UBERON:0002036,1.07e-07,62;UBERON:0003082,1.07e-07,62;UBERON:0007524,1.82e-07,73;UBERON:0002329,2.63e-07,71;UBERON:0003059,2.63e-07,71;UBERON:0007282,2.63e-07,71;UBERON:0004290,2.63e-07,71;UBERON:0009618,2.63e-07,71;UBERON:0002385,3.14e-07,64;UBERON:0001015,3.14e-07,64;UBERON:0000383,3.14e-07,64;UBERON:0003077,4.23e-07,72;UBERON:0007285,4.23e-07,72;UBERON:0004573,4.36e-07,33;UBERON:0004571,4.36e-07,33;UBERON:0000486,6.59e-07,83;UBERON:0003134,9.98e-07,37;UBERON:0000474,9.98e-07,37 | |||
|phase1_expression=0.726713517082227,5.99481466894753,0.422863212287913,2.00146596706261,0.446961094427288,6.97870819280295,0,0.631719873426831,0,0.245733936501509,6.97801167972428,0.436882744260345,1.31883489114227,0,0.331397375727916,4.03395087871065,1.20538905604795,3.65155045193687,2.43966399395253,0.123121058076788,2.44800829493104,1.56727360739044,0,2.18999080116615,1.50651167513763,0.0764134057479513,0,0,0,0,0,1.83884244895785,3.31326510656075,4.06729411183466,0,0,0,0,0,0,0,0,0,0.436194716338694,0.755751887377619,0.242584061187816,0.464858073811369,0,0.309706370895104,0.575384784644301,0.256160706529101,0.236482229888585,0,0,0,0.941211697713023,0.545812300115692,0.674170453335254,0,0,0,0,0.997318288108159,0.852449501065388,0.290209238628584,0.56738522469114,0.622822248995575,1.00499466102697,1.5644487552606,0.868755378820466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.722878304769133,1.00267582127178,1.44846518960824,0.795285947051099,0.973269740605272,1.03988298880475,4.21285855178871,1.58102614247627,0,0,2.59549109949101,0,0,0.398873881556595,0,0,0,0.198762407366705,0,0,0,0,3.02629846134074,0.626984899610432,0,0.71153252537342,0,0.805658634218294,0,0.24406205754817,0.367663080345869,4.86085168729056,0,0,0,0,0.949265659568129,0.183201743930407,0,0,0,0,1.01304409331664,0.264818361626438,0.860509862246441,2.12801029319014,1.12135520028461,1.06748995729705,6.41335625884616,0,0.538842688278752,0.817309515567294,0,0,0.937285727335186,0.624320153660641,0,0.597794722207204,2.81842796745036,0.809364721840658,0.702254033511242,0.204154171254893,1.47401180774122,0.309977343527296,3.56400857184616,2.47266929278557,0,0.718618141816238,0,1.12606667884768,0,0.438977620880838,4.59731693698529,1.05166641234618,0.794025282120147,0.717558542755448,1.06778694409284,0.635795703478686,1.20036438433761,0.824420233907511,0.515281080091258,0.744467425326359,0.506328996723799,0.974370051611986,0,0.736399189138395,0.323292113637624,0.710019185033229,1.61203357164224,0.67824236924195,0.193260853163297,0.272746120590835,0.573609190778008,0.365921118388786,0,0.464775771478074,0.518305275076852,1.00928340350251,0.36497735907583,0,5.14592750554308,0,0.928735856063958,0,1.65629520055781,2.52877035117153,0.482022059766964,2.31617342738027,1.30727666455444,1.18635309555548,0.943819157121151,1.17732879075208,1.53898862778556,0,0,0,1.47008711385542,0,0,0,0,0.122988438543114,0.343135620597051,1.20725313949488,1.1240175325762,1.50793458617446,0.555530670951178,0.651616610620649,1.03993478527958,1.44331342025273,0,0.352226082707465,0.288732895522148,0.925971025153221,0,3.1608175918371,0.858486162094873,0,0,0.148631162288728,0.93733833986777,1.00789276919316,0.708875486211932,0.895585227028483,0.871901815541886,0,0,0,0,0,0,0,1.14596527667483,0,0,0.925447434329912,0.600686115687835,0,0.560655421726804,1.74384027533312,0.22001485746285,0.517086863031111,0,0,0.531876233169741,1.04007436911366,0.257207374262142,0,0.799266537048298,0,0,0.823240336780769,0.325736184293735,0.355391948742546,1.58390374586686,1.20575750823834,1.74306691720059,3.09916272664377,0,0,0,0.718874566474748,0,0,1.30303176000821,5.34238438630997,0.358121926479791,0,0,0,0,0,0,4.63973287666617,0,3.82763250991898,0,2.99161459204025,0,0,0,0.271265023699736,0.623912584592421,4.10386674233472,2.20783381047509,0.585707074963566,0,0,3.10419213877515,0.664225598535437,0.921845842708516,0.695068915744663,0,0,0,0,0,2.12189300012382,3.32870879020994,3.0239029332968,0,0.460385919864187,5.3325417942284,0.896974044789907,0,1.93024705372329,1.48418066444991,5.08891989548763,3.72879623157567,0.657017248110473,2.07701771673448,4.53220475993841,0.362578348774867,3.20810352485256,1.10497186723076,0.459257792658427,6.00900854422166,1.83574180943194,0,0.539107359730903,0,0,0.949964660035881,0,1.02056223165909,0.863663664408557,3.08454505380579,0,1.50506932156456,0.764628819135115,0.831076008928724,1.11937377361089,0,0,0.256450125116389,0.984043937099117,0,0.103041011647722,0.640986253728404,0.247528499761764,0,3.25030123018261,1.6068392984416,0.096670718292122,1.84858340537573,1.38153307253517,1.7918754422989,0.107420244868274,0.580066775656914,0.93749290157711,0.356128142586949,0.826424576804891,1.53752053892085,0.382838137483752,0.809262246844399,0.464845549297286,1.88887408098384,0,0.308033580176089,0.532306030317022,0,0.74129687641568,2.14687330112987,0,0.632758849437452,1.33441135746677,1.02359116524534,0,0.318203247925937,3.13979456079692,0.359744915166629,2.47083326762449,1.64937363283961,1.01091240786658,1.58510321173008,2.52755073743389,0,5.60541026151954,3.16950440270266,0.272999822815972,1.27264888758341,1.13008116620243,0,4.64407282668854,1.75380354101505,0.578775534266688,0,0.811641507850816,2.16876448669825,1.40847801266121,0,0.294747123039363,0.35667105148125,1.41904425628239,0.844430541190656,0.987884678879706,0.379473173765715,0.349934720244983,0.8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| |||
|short_description=p@chr16:3071939..3071959,+ | |||
}} |
Revision as of 01:59, 12 January 2014
Short description: | p@chr16:3071939..3071959, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:3071939..3071959, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.21e-11 | 250 |
smooth muscle cell | 6.80e-09 | 43 |
smooth muscle myoblast | 6.80e-09 | 43 |
muscle precursor cell | 9.74e-09 | 58 |
myoblast | 9.74e-09 | 58 |
multi-potent skeletal muscle stem cell | 9.74e-09 | 58 |
vascular associated smooth muscle cell | 3.13e-08 | 32 |
electrically responsive cell | 4.19e-08 | 61 |
electrically active cell | 4.19e-08 | 61 |
muscle cell | 7.87e-08 | 55 |
mesodermal cell | 1.42e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.12e-08 | 78 |
artery | 8.53e-08 | 42 |
arterial blood vessel | 8.53e-08 | 42 |
arterial system | 8.53e-08 | 42 |
skeletal muscle tissue | 1.07e-07 | 62 |
striated muscle tissue | 1.07e-07 | 62 |
myotome | 1.07e-07 | 62 |
dense mesenchyme tissue | 1.82e-07 | 73 |
somite | 2.63e-07 | 71 |
presomitic mesoderm | 2.63e-07 | 71 |
presumptive segmental plate | 2.63e-07 | 71 |
dermomyotome | 2.63e-07 | 71 |
trunk paraxial mesoderm | 2.63e-07 | 71 |
muscle tissue | 3.14e-07 | 64 |
musculature | 3.14e-07 | 64 |
musculature of body | 3.14e-07 | 64 |
paraxial mesoderm | 4.23e-07 | 72 |
presumptive paraxial mesoderm | 4.23e-07 | 72 |
systemic artery | 4.36e-07 | 33 |
systemic arterial system | 4.36e-07 | 33 |
multilaminar epithelium | 6.59e-07 | 83 |
female reproductive organ | 9.98e-07 | 37 |
female reproductive system | 9.98e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.12e-08 | 14 |
female reproductive organ cancer | 1.11e-07 | 27 |
reproductive organ cancer | 7.24e-07 | 29 |