FFCP PHASE1:Hg19::chr20:39768553..39768594,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C388 | |||
|description=CAGE_peak_at_chr20:39768553..39768594,+ | |||
|id=chr20:39768553..39768594,+ | |||
|ontology_enrichment_celltype=CL:0000791!2.71e-41!18;CL:0000789!2.71e-41!18;CL:0002420!2.71e-41!18;CL:0002419!2.71e-41!18;CL:0000790!2.71e-41!18;CL:0000084!3.25e-35!25;CL:0000827!3.25e-35!25;CL:0000625!4.83e-29!11;CL:0000838!1.10e-27!52;CL:0000542!5.06e-27!53;CL:0000051!5.06e-27!53;CL:0000624!1.51e-16!6;CL:0002087!7.87e-13!119;CL:0000738!2.19e-12!140;CL:0000037!2.89e-09!172;CL:0000566!2.89e-09!172;CL:0000898!3.10e-09!3;CL:0002031!3.95e-09!124;CL:0000842!1.01e-08!3;CL:0000623!1.57e-08!3;CL:0000825!1.57e-08!3;CL:0000988!2.61e-08!182;CL:0002032!1.06e-07!165;CL:0000837!1.06e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.53e-62;18!CL:0000789;3.53e-62;18!CL:0002419;3.53e-62;18!CL:0000084;9.92e-44;25!CL:0000625;1.83e-40;11!CL:0000624;3.49e-27;6!CL:0000898;9.83e-15;3!CL:0000542;3.61e-11;53!CL:0000815;3.06e-10;2!CL:0000792;3.06e-10;2!CL:0002677;3.06e-10;2!CL:0000226;6.52e-07;3!CL:0000842;6.52e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.51e-62,18;CL:0000789,2.51e-62,18;CL:0002420,2.51e-62,18;CL:0002419,2.51e-62,18;CL:0000790,2.51e-62,18;CL:0000084,7.79e-44,25;CL:0000827,7.79e-44,25;CL:0000625,1.26e-40,11;CL:0000624,3.58e-27,6;CL:0000838,8.53e-22,52;CL:0000542,2.61e-21,53;CL:0000051,2.61e-21,53;CL:0000898,1.16e-14,3;CL:0000815,2.92e-10,2;CL:0000792,2.92e-10,2;CL:0002677,2.92e-10,2;CL:0002087,5.68e-10,115;CL:0000738,8.21e-08,136;CL:0002031,3.22e-07,120;CL:0000226,5.44e-07,3;CL:0000842,5.44e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.53e-62;18!CL:0000051;3.61e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!7.41e-16!15;UBERON:0000179!7.41e-16!15;UBERON:0000463!7.41e-16!15;UBERON:0004177!5.61e-09!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.75e-17;15!UBERON:0000179;1.75e-17;15!UBERON:0000463;1.75e-17;15!UBERON:0002390;3.02e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.39e-17,15;UBERON:0000179,1.39e-17,15;UBERON:0000463,1.39e-17,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75393678159366,2.75107533924415,1.23360899399706,19.5608199607093,2.93330039970231,0.946895611469467,3.89653456815823,2.56244050835899,2.06224135232386,1.77227115666897,2.70803863765016,3.5865569523189,3.38154303655683,4.1109476150919,3.31620021343018,8.40428948631652,3.11401782640327,4.28065324943541,2.09071047609954,5.21222976408804,3.06576394881537,2.06176467289578,2.78321661221453,4.14135038621326,0.651083453856419,1.90090408889675,3.61380285786655,3.83959833463255,3.74792179657038,1.18388626022008,1.64225599384209,2.62088766192152,2.13952156626806,3.62061009706997,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1673383622212,0.646882724578552,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48121631347465,1.94142780736755,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,1.52927441428475,0,1.42939065274673,1.64544909234478,1.29694662238543,1.62009431171434,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0.182454789215666,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.45120521581504,0,0,0,0,0,0.458729283404541,0,0,0.0679914901909147,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.581300188524055,1.24149428591716,0,0,0,0,0,0.606168477131288,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr20:39768553..39768594,+ | |||
}} |
Revision as of 11:15, 21 January 2014
Short description: | p@chr20:39768553..39768594, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr20:39768553..39768594, + |
Coexpression cluster: | C388_CD4_CD8_cord_Peripheral_Natural_Whole_thymus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.51e-62 | 18 |
alpha-beta T cell | 2.51e-62 | 18 |
immature T cell | 2.51e-62 | 18 |
mature T cell | 2.51e-62 | 18 |
immature alpha-beta T cell | 2.51e-62 | 18 |
T cell | 7.79e-44 | 25 |
pro-T cell | 7.79e-44 | 25 |
CD8-positive, alpha-beta T cell | 1.26e-40 | 11 |
CD4-positive, alpha-beta T cell | 3.58e-27 | 6 |
lymphoid lineage restricted progenitor cell | 8.53e-22 | 52 |
lymphocyte | 2.61e-21 | 53 |
common lymphoid progenitor | 2.61e-21 | 53 |
naive T cell | 1.16e-14 | 3 |
regulatory T cell | 2.92e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.92e-10 | 2 |
naive regulatory T cell | 2.92e-10 | 2 |
nongranular leukocyte | 5.68e-10 | 115 |
leukocyte | 8.21e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 3.22e-07 | 120 |
single nucleate cell | 5.44e-07 | 3 |
mononuclear cell | 5.44e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.39e-17 | 15 |
haemolymphatic fluid | 1.39e-17 | 15 |
organism substance | 1.39e-17 | 15 |