FFCP PHASE1:Hg19::chr4:140568504..140568522,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:140568504..140568522,- | |||
|id=chr4:140568504..140568522,- | |||
|ontology_enrichment_celltype=CL:0002076!2.52e-29!43;CL:0000223!1.49e-24!59;CL:0000066!2.73e-19!254;CL:0002251!4.59e-15!21;CL:0002368!4.93e-12!13;CL:0002159!1.56e-08!13;CL:0002231!9.89e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.73e-10;13!CL:0002076;5.61e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.82e-10,13;CL:0000223,1.18e-09,58;CL:0002076,2.20e-09,42;CL:0000066,7.62e-07,253;CL:0002127,8.49e-07,1;CL:0000914,8.49e-07,1;CL:0000911,8.49e-07,1;CL:0000814,8.49e-07,1;CL:0002042,8.49e-07,1;CL:0002039,8.49e-07,1;CL:0002040,8.49e-07,1;CL:0002041,8.49e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009143;2.29e-07;1 | |||
|ontology_enrichment_disease=DOID:1749!9.72e-13!14;DOID:305!1.34e-12!106;DOID:0050687!1.76e-08!143;DOID:162!8.39e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:3111;2.29e-07;1!DOID:3603;2.29e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,2.22e-07,1;DOID:3603,2.22e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.39e-16!169;UBERON:0000925!2.39e-16!169;UBERON:0006595!2.39e-16!169;UBERON:0001004!1.16e-12!72;UBERON:0001007!3.73e-12!155;UBERON:0001555!3.73e-12!155;UBERON:0007026!3.73e-12!155;UBERON:0000344!1.08e-11!12;UBERON:0000077!7.51e-10!130;UBERON:0000161!1.50e-09!35;UBERON:0004921!7.22e-09!129;UBERON:0004185!7.22e-09!129;UBERON:0000065!1.52e-08!53;UBERON:0000166!4.11e-08!21;UBERON:0005911!2.22e-07!82;UBERON:0001041!9.09e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;1.66e-08;3!UBERON:0001033;1.66e-08;3!UBERON:0005795;3.17e-07;1!UBERON:0002372;5.36e-07;1!UBERON:0001961;5.36e-07;1!UBERON:0001744;5.36e-07;1!UBERON:0001042;5.36e-07;1!UBERON:0001735;5.36e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001042,3.52e-09,10;UBERON:0009145,3.52e-09,10;UBERON:0001723,1.79e-08,3;UBERON:0001033,1.79e-08,3;UBERON:0010056,1.79e-08,3;UBERON:0000065,1.80e-08,54;UBERON:0001004,1.84e-08,74;UBERON:0006562,2.36e-08,11;UBERON:0004119,2.08e-07,160;UBERON:0000925,2.08e-07,160;UBERON:0006595,2.08e-07,160;UBERON:0002372,4.51e-07,1;UBERON:0001961,4.51e-07,1;UBERON:0001744,4.51e-07,1;UBERON:0001735,4.51e-07,1;UBERON:0007029,8.02e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.768251997860379,2.24803506515239,0.201057944823262,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34502172792233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.40101294060657,11.2338806501794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31398881505369,1.72971060628596,0.510450849978337,4.55210013849975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,0.670302275535787,0,0,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0.748562161632879,0,0,0.557216921387392,0,1.19372242368845,0.296964680832639,3.99308912729002,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0.435753854075961,2.64905114129346,1.07730361905316,0,0,0.897576444097721,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,2.12202650606892,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,5.28294471116642,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,1.17590876897253,0.174118413160805,0,0,0,0,0,8.53503345098091,0,0,0,0,0,0.391102765469606,1.68333522528221,0,0,0.288180834308212,0,0,3.31326035372744,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670869375198532,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19760786519031,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.87510918106234,0,0,0.172214979660816,0,0,5.87493932421667,1.24415452006595,0,0,0,0,0,0,0,0,0,0.630893960010027,0,0,0,0,0,0,0,0,0,0,0,0.588886311006154,1.29766695682514,0.183428598521679,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0.496211178389294,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0.444925607568277,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0.6828739083758,7.60385627995501,0,0,0,0,0,0.31020638566432,0,0.223710863595585,3.33710794291826,0,0,0,0,1.45713297917742,0,0,0,0.90356865631168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,3.17605384544123,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,4.69114760182158,0,0,0,0.224263725161227,0,0,2.61260097476354,2.05339980651169,2.96349033264185,0.932388670104793,0.332660356546013,0.0814032686109745,0,0,0,0,0,4.47585796147312,0,0.201273793591026,0 | |||
|short_description=p@chr4:140568504..140568522,- | |||
}} |
Revision as of 03:12, 22 January 2014
Short description: | p@chr4:140568504..140568522, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:140568504..140568522, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.82e-10 | 13 |
endodermal cell | 1.18e-09 | 58 |
endo-epithelial cell | 2.20e-09 | 42 |
epithelial cell | 7.62e-07 | 253 |
innate effector T cell | 8.49e-07 | 1 |
immature NK T cell | 8.49e-07 | 1 |
effector T cell | 8.49e-07 | 1 |
mature NK T cell | 8.49e-07 | 1 |
immature NK T cell stage IV | 8.49e-07 | 1 |
immature NK T cell stage I | 8.49e-07 | 1 |
immature NK T cell stage II | 8.49e-07 | 1 |
immature NK T cell stage III | 8.49e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
chordate pharynx | 3.52e-09 | 10 |
pharyngeal region of foregut | 3.52e-09 | 10 |
tongue | 1.79e-08 | 3 |
gustatory system | 1.79e-08 | 3 |
future tongue | 1.79e-08 | 3 |
respiratory tract | 1.80e-08 | 54 |
respiratory system | 1.84e-08 | 74 |
pharynx | 2.36e-08 | 11 |
endoderm-derived structure | 2.08e-07 | 160 |
endoderm | 2.08e-07 | 160 |
presumptive endoderm | 2.08e-07 | 160 |
tonsil | 4.51e-07 | 1 |
mucosa-associated lymphoid tissue | 4.51e-07 | 1 |
lymphoid tissue | 4.51e-07 | 1 |
tonsillar ring | 4.51e-07 | 1 |
surface | 8.02e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 2.22e-07 | 1 |
mucinous cystadenocarcinoma | 2.22e-07 | 1 |