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| motif without matrices
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| [[Swissregulon:SRY.p1]]
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| [[Swissregulon:HOX(A,B,D)3.p1]]
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|
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| doubled top motif tables
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| CNhs10855 & CNhs11062
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| CNhs11245 & CNhs11183
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| CNhs11248 & CNhs11185
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| CNhs11772 & CNhs12996
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| CNhs11781 & CNhs12997
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|
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| {{REVISIONTIMESTAMP}}
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| {{#ifexpr: {{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }} > 0 | yes }}
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|
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| {{CURRENTTIMESTAMP}}
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|
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| |id=chr20:44409377..44409407,-
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| |ontology_enrichment_celltype=CL:0000322;3.09e-12;3!CL:0002601;1.30e-09;1!CL:0000319;1.30e-09;1!CL:0000082;2.50e-07;19
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| |ontology_enrichment_development=UBERON:0000358;4.08e-10;1!UBERON:0001041;7.06e-07;30
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| |ontology_enrichment_disease=DOID:3910;7.09e-18;2!DOID:3908;5.32e-16;5!DOID:3030;1.30e-09;1!DOID:5662;1.30e-09;1!DOID:1324;2.98e-09;15!DOID:3905;4.02e-09;9!DOID:0050615;1.11e-08;16
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| |ontology_enrichment_uberon=UBERON:0004903;7.09e-18;2!UBERON:0002173;7.09e-18;2!UBERON:0002186;7.09e-18;2!UBERON:0004821;3.09e-12;3!UBERON:0007499;3.09e-12;3!UBERON:0003215;3.09e-12;3!UBERON:0010368;3.09e-12;3!UBERON:0009911;3.09e-12;3!UBERON:0002299;3.09e-12;3!UBERON:0006524;3.09e-12;3!UBERON:0008874;3.09e-12;3!UBERON:0002169;3.09e-12;3!UBERON:0004894;3.09e-12;3!UBERON:0009856;2.12e-09;4!UBERON:0004802;2.50e-07;19!UBERON:0000115;2.50e-07;19
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|
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| <html> | | <html> |
| <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script> | | <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script> |
| <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | | <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> |
|
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| <style type="text/css" title="currentStyle"> | | <style type="text/css" title="currentStyle"> |
| @import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css"; | | @import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css"; |
| @import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | | @import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; |
| .table_title{
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| text-align:left;
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| font-size:small;
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| text-decoration:underline;
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| color:dimgray;
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| }
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| </style> | | </style> |
| <script type="text/javascript"> | | <script> |
|
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| $(document).ready(function() { | | $(document).ready(function() { |
| var oTable = $('.enrichment_list').dataTable({ | | var oTable = $('.ff_sample_list').dataTable({ |
| "sScrollY": "300px",
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| "bScrollCollapse": true,
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| "bPaginate": false,
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| "bFilter": false,
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| // "iDisplayLength": -1,
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| // "aLengthMenu": [[10, 25, 100, -1], [10, 25, 100, "All"]],
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| "aoColumnDefs": [ { "asSorting": [ "desc", "asc" ], "aTargets": [ "_all" ] } , { "bSortable": false, "aTargets": [ 0 ] }, { "sType": "numeric", "aTargets": [1] }, { "sWidth": "50pt", "aTargets": [ 1 ] }],
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| "aaSorting": [[ 1, "desc" ]]
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| }); | | }); |
|
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|
| $("#test").text("<wiki>[[CL:0000322]]</wiki>");
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| }); | | }); |
| </script> | | </script> |
| </html> | | </html> |
|
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|
| <div style="float:left;width:33%;">
| | {{#ask:[[Concept:FF_samples_withname]]|[[Sample_species::Human (Homo sapiens)]]|mainlabel=FF ontology id|?Name|?Sample_category|?datafreeze_phase |
| <table class="enrichment_list"><caption class="table_title">Cell Type</caption><html><thead></html>
| | |format=ttable|class=ff_sample_list|limit=20|searchlabel=}} |
| <tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
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| <html></thead><tbody></html><tr><td>
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| {{#arraymap:CL:0000322;3.09e-12;3!CL:0002601;1.30e-09;1!CL:0000319;1.30e-09;1!CL:0000082;2.50e-07;19|!|$
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| |[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
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| |</td></tr><tr><td>}}
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| </td></tr>
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| <html></tbody></html></table>
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| </div>
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| | |
| <div style="float:left;width:33%;">
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| <table class="enrichment_list"><caption class="table_title">Uber Anatomy</caption><html><thead></html>
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| <tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
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| <html></thead><tbody></html><tr><td>
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| {{#arraymap:UBERON:0004903;7.09e-18;2!UBERON:0002173;7.09e-18;2!UBERON:0002186;7.09e-18;2!UBERON:0004821;3.09e-12;3!UBERON:0007499;3.09e-12;3!UBERON:0003215;3.09e-12;3!UBERON:0010368;3.09e-12;3!UBERON:0009911;3.09e-12;3!UBERON:0002299;3.09e-12;3!UBERON:0006524;3.09e-12;3!UBERON:0008874;3.09e-12;3!UBERON:0002169;3.09e-12;3!UBERON:0004894;3.09e-12;3!UBERON:0009856;2.12e-09;4!UBERON:0004802;2.50e-07;19!UBERON:0000115;2.50e-07;19|!|$
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| |[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
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| |</td></tr><tr><td>}}
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| </td></tr>
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| <html></tbody></html></table>
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| </div>
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| | |
| <div style="float:left;width:33%;">
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| <table class="enrichment_list"><caption class="table_title">Disease</caption><html><thead></html>
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| <tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
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| <html></thead><tbody></html><tr><td>
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| {{#arraymap:DOID:3910;7.09e-18;2!DOID:3908;5.32e-16;5!DOID:3030;1.30e-09;1!DOID:5662;1.30e-09;1!DOID:1324;2.98e-09;15!DOID:3905;4.02e-09;9!DOID:0050615;1.11e-08;16|!|$
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| |[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
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| |</td></tr><tr><td>}}
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| </td></tr>
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| <html></tbody></html></table>
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| </div>
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| <div style="clear:both;"></div>
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| <div id="test"></div>
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| | |
| <!--
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| {{#sparql:select * where { ?x ?y ?z . } LIMIT 100 |endpoint=http://localhost:8080/sparql/}}
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| | |
| {{#ask:[[Category:FFCP]][[Coexpression_cluster_id::C297]]|?id|?Short_description|?Phase1_expression|format=template|template=Datatable_sampledata|sep=,|limit=20000}} | |
| | |
| {{#jstest:
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| {{#ask:[[Category:FF Ontology]][[Sample_species::Mouse (Mus musculus)]]|?id|?Name|?sample_tissue|?sample_cell_line=|?sample_cell_type|?rna_sample_type|format=template|template=Datatable_sampledata|sep=,|limit=2000}}
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| }}
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| -->
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| {{#sparql:
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| SELECT * WHERE { ?x ?y ?z FILTER regex(?z, "GO")
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| } LIMIT 10
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| |endpoint=http://go.bio2rdf.org/sparql/ | |
| |footer=NO
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| }} | |
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| | |
| <!--
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| {{#sparql:select * where { ?x ?y ?z . } LIMIT 10 |endpoint=http://localhost:8080/sparql/}}
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| | |
| {{#sparql:
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| PREFIX prop:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/Property-3A>
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| PREFIX page:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/>
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| SELECT ?x,?y WHERE {
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| ?x
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| prop:Sample_species
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| ?y FILTER regex(?y, "OMO", "i" )
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| } LIMIT 100
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| |endpoint=http://localhost:8080/sparql/
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| |headers=Page,Id
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| |footer=NO
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| }}
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| | |
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| -->
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