CL:0000149: Difference between revisions

Revision as of 10:14, 12 September 2014

Name:	visual pigment cell
Namespace:	cell
Synonyms:	"pigment cell" BROAD []

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0000147(pigment cell)

Children

is a:	CL:0002586 (retinal pigment epithelial cell),FF:12739-135I3 (Melanocyte, donor2 (MC+2))

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
12739-135I3 (Melanocyte, donor2 (MC+2))
13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)

... further results Mouse (Mus musculus)

11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
12739-135I3 (Melanocyte, donor2 (MC+2))
13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000149 (visual pigment cell), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
6.94e-147	FFCP PHASE1:Hg19::chr1:147150847..147150854,-	p@chr1:147150847..147150854, -
6.94e-147	FFCP PHASE2:Hg19::chr1:147150847..147150854,-	p@chr1:147150847..147150854, -
8.91e-111	FFCP PHASE1:Hg19::chr13:51913806..51913817,+	p2@SERPINE3
8.91e-111	FFCP PHASE2:Hg19::chr13:51913806..51913817,+	p2@SERPINE3
1.3e-110	FFCP PHASE2:Hg19::chr13:99135322..99135327,-	p@chr13:99135322..99135327, -
1.3e-110	FFCP PHASE1:Hg19::chr13:99135322..99135327,-	p@chr13:99135322..99135327, -
1.55e-98	FFCP PHASE2:Hg19::chr13:51913893..51913901,+	p@chr13:51913893..51913901, +
1.55e-98	FFCP PHASE1:Hg19::chr13:51913893..51913901,+	p@chr13:51913893..51913901, +
5.72e-89	FFCP PHASE1:Hg19::chr11:109990513..109990520,-	p@chr11:109990513..109990520, -
5.72e-89	FFCP PHASE2:Hg19::chr11:109990513..109990520,-	p@chr11:109990513..109990520, -
1.41e-88	FFCP PHASE1:Hg19::chr5:70308745..70308754,-	p@chr5:70308745..70308754, -
1.41e-88	FFCP PHASE2:Hg19::chr5:70308745..70308754,-	p@chr5:70308745..70308754, -
2.01e-74	FFCP PHASE2:Hg19::chr11:61522844..61522875,+	p2@C11orf9
2.01e-74	FFCP PHASE1:Hg19::chr11:61522844..61522875,+	p2@C11orf9
4.26e-74	FFCP PHASE2:Hg19::chr2:235591306..235591328,+	p@chr2:235591306..235591328, +
4.26e-74	FFCP PHASE1:Hg19::chr2:235591306..235591328,+	p@chr2:235591306..235591328, +
2.4e-66	FFCP PHASE2:Hg19::chr11:61522820..61522823,+	p9@C11orf9
2.4e-66	FFCP PHASE1:Hg19::chr11:61522820..61522823,+	p9@C11orf9
3.35e-66	FFCP PHASE2:Hg19::chr8:75898210..75898219,+	p11@CRISPLD1
3.35e-66	FFCP PHASE1:Hg19::chr8:75898210..75898219,+	p11@CRISPLD1
4.67e-66	FFCP PHASE2:Hg19::chr2:45166274..45166281,-	p5@ENST00000437916
4.67e-66	FFCP PHASE1:Hg19::chr2:45166274..45166281,-	p5@ENST00000437916
2.61e-64	FFCP PHASE1:Hg19::chr13:51913819..51913838,+	p1@SERPINE3
2.61e-64	FFCP PHASE2:Hg19::chr13:51913819..51913838,+	p1@SERPINE3
5.98e-57	FFCP PHASE2:Hg19::chr5:33984786..33984820,-	p2@SLC45A2
5.98e-57	FFCP PHASE1:Hg19::chr5:33984786..33984820,-	p2@SLC45A2
2.6e-56	FFCP PHASE2:Hg19::chr3:69928426..69928436,+	p@chr3:69928426..69928436, +
2.6e-56	FFCP PHASE1:Hg19::chr3:69928426..69928436,+	p@chr3:69928426..69928436, +
3.14e-56	FFCP PHASE2:Hg19::chr3:69928404..69928418,+	p@chr3:69928404..69928418, +
3.14e-56	FFCP PHASE1:Hg19::chr3:69928404..69928418,+	p@chr3:69928404..69928418, +
4.58e-56	FFCP PHASE1:Hg19::chr6:168250971..168250985,+	p@chr6:168250971..168250985, +
4.58e-56	FFCP PHASE1:Hg19::chr22:37633537..37633546,-	p@chr22:37633537..37633546, -
4.58e-56	FFCP PHASE2:Hg19::chr6:168250971..168250985,+	p@chr6:168250971..168250985, +
4.58e-56	FFCP PHASE2:Hg19::chr22:37633537..37633546,-	p@chr22:37633537..37633546, -
6.68e-56	FFCP PHASE2:Hg19::chr1:43533230..43533270,+	p@chr1:43533230..43533270, +
6.68e-56	FFCP PHASE1:Hg19::chr1:43533230..43533270,+	p@chr1:43533230..43533270, +
3.1e-50	FFCP PHASE1:Hg19::chr13:51913997..51914020,+	p@chr13:51913997..51914020, +
3.1e-50	FFCP PHASE1:Hg19::chrY:14230731..14230736,-	p@chrY:14230731..14230736, -
3.1e-50	FFCP PHASE2:Hg19::chr13:51913997..51914020,+	p@chr13:51913997..51914020, +
3.1e-50	FFCP PHASE2:Hg19::chrY:14230731..14230736,-	p@chrY:14230731..14230736, -
3.69e-50	FFCP PHASE2:Hg19::chr21:36041275..36041282,+	p5@CLIC6
3.69e-50	FFCP PHASE1:Hg19::chr21:36041275..36041282,+	p5@CLIC6
7.22e-50	FFCP PHASE2:Hg19::chr15:55562656..55562664,-	p14@RAB27A
7.22e-50	FFCP PHASE1:Hg19::chr15:55562656..55562664,-	p14@RAB27A
8.47e-50	FFCP PHASE1:Hg19::chr6:168251000..168251007,+	p@chr6:168251000..168251007, +
8.47e-50	FFCP PHASE2:Hg19::chr6:168251000..168251007,+	p@chr6:168251000..168251007, +
9.18e-50	FFCP PHASE1:Hg19::chr5:33984741..33984774,-	p1@SLC45A2
9.18e-50	FFCP PHASE2:Hg19::chr5:33984741..33984774,-	p1@SLC45A2
1.97e-45	FFCP PHASE1:Hg19::chr13:99135278..99135298,-	p@chr13:99135278..99135298, -
1.97e-45	FFCP PHASE2:Hg19::chr13:99135278..99135298,-	p@chr13:99135278..99135298, -
1.67e-41	FFCP PHASE1:Hg19::chr3:69928371..69928385,+	p@chr3:69928371..69928385, +
1.67e-41	FFCP PHASE2:Hg19::chr3:69928371..69928385,+	p@chr3:69928371..69928385, +
2.2e-41	FFCP PHASE1:Hg19::chr14:87636652..87636657,-	p@chr14:87636652..87636657, -
2.2e-41	FFCP PHASE2:Hg19::chr14:87636652..87636657,-	p@chr14:87636652..87636657, -
1.81e-40	FFCP PHASE2:Hg19::chr2:235591286..235591298,+	p@chr2:235591286..235591298, +
1.81e-40	FFCP PHASE1:Hg19::chr2:235591286..235591298,+	p@chr2:235591286..235591298, +
2.71e-40	FFCP PHASE1:Hg19::chr12:56347889..56347893,+	p@chr12:56347889..56347893, +
2.71e-40	FFCP PHASE2:Hg19::chr12:56347889..56347893,+	p@chr12:56347889..56347893, +
3.55e-40	FFCP PHASE1:Hg19::chr11:88911074..88911102,+	p2@TYR
3.55e-40	FFCP PHASE2:Hg19::chr11:88911074..88911102,+	p2@TYR
4.94e-40	FFCP PHASE2:Hg19::chr11:119217442..119217445,-	p5@MFRP, p6@C1QTNF5
4.94e-40	FFCP PHASE2:Hg19::chr16:84228961..84228982,+	p@chr16:84228961..84228982, +
4.94e-40	FFCP PHASE1:Hg19::chr16:84228961..84228982,+	p@chr16:84228961..84228982, +
4.94e-40	FFCP PHASE1:Hg19::chr11:119217442..119217445,-	p5@MFRP, p6@C1QTNF5
7.95e-40	FFCP PHASE2:Hg19::chr15:48413211..48413239,+	p2@SLC24A5
7.95e-40	FFCP PHASE1:Hg19::chr15:48413211..48413239,+	p2@SLC24A5
2.78e-38	FFCP PHASE1:Hg19::chr21:36041264..36041274,+	p3@CLIC6
2.78e-38	FFCP PHASE2:Hg19::chr21:36041264..36041274,+	p3@CLIC6
4.61e-38	FFCP PHASE1:Hg19::chr11:75201755..75201762,-	p7@GDPD5
4.61e-38	FFCP PHASE2:Hg19::chr11:75201755..75201762,-	p7@GDPD5
1.26e-37	FFCP PHASE2:Hg19::chr11:119217421..119217435,-	p4@MFRP, p5@C1QTNF5
1.26e-37	FFCP PHASE1:Hg19::chr11:119217421..119217435,-	p4@MFRP, p5@C1QTNF5
1.43e-37	FFCP PHASE1:Hg19::chr12:56351196..56351222,-	p7@PMEL
1.43e-37	FFCP PHASE2:Hg19::chr12:56351196..56351222,-	p7@PMEL
9.55e-37	FFCP PHASE1:Hg19::chr11:88911033..88911049,+	p1@TYR
9.55e-37	FFCP PHASE2:Hg19::chr11:88911033..88911049,+	p1@TYR
8.49e-35	FFCP PHASE1:Hg19::chr15:55562582..55562617,-	p3@RAB27A
8.49e-35	FFCP PHASE2:Hg19::chr15:55563100..55563135,-	p4@RAB27A
8.49e-35	FFCP PHASE1:Hg19::chr15:55563100..55563135,-	p4@RAB27A
8.49e-35	FFCP PHASE2:Hg19::chr15:55562582..55562617,-	p3@RAB27A
5.06e-34	FFCP PHASE2:Hg19::chr17:932596..932605,-	p@chr17:932596..932605, -
5.06e-34	FFCP PHASE1:Hg19::chr17:932596..932605,-	p@chr17:932596..932605, -
8.36e-34	FFCP PHASE2:Hg19::chr17:932340..932343,-	p@chr17:932340..932343, -
8.36e-34	FFCP PHASE1:Hg19::chr20:52790691..52790695,-	p5@CYP24A1
8.36e-34	FFCP PHASE1:Hg19::chr17:932340..932343,-	p@chr17:932340..932343, -
8.36e-34	FFCP PHASE2:Hg19::chr22:38480132..38480159,-	p1@SLC16A8
8.36e-34	FFCP PHASE2:Hg19::chr20:52790691..52790695,-	p5@CYP24A1
8.36e-34	FFCP PHASE1:Hg19::chr22:38480132..38480159,-	p1@SLC16A8
1.38e-33	FFCP PHASE2:Hg19::chr3:98672197..98672201,+	p@chr3:98672197..98672201, +
1.38e-33	FFCP PHASE1:Hg19::chr3:98672197..98672201,+	p@chr3:98672197..98672201, +
1.63e-33	FFCP PHASE2:Hg19::chr3:183733654..183733680,-	p@chr3:183733654..183733680, -
1.63e-33	FFCP PHASE1:Hg19::chr9:127025189..127025200,+	p1@ENST00000437461
1.63e-33	FFCP PHASE1:Hg19::chr3:183733654..183733680,-	p@chr3:183733654..183733680, -
1.63e-33	FFCP PHASE2:Hg19::chr9:127025189..127025200,+	p1@ENST00000437461
2.89e-33	FFCP PHASE2:Hg19::chr9:140088882..140088898,-	p@chr9:140088882..140088898, -
2.89e-33	FFCP PHASE1:Hg19::chr9:140088882..140088898,-	p@chr9:140088882..140088898, -
6.19e-33	FFCP PHASE1:Hg19::chr14:28081776..28081788,+	p1@LOC100505967
6.19e-33	FFCP PHASE2:Hg19::chr14:28081776..28081788,+	p1@LOC100505967
1.18e-32	FFCP PHASE1:Hg19::chr2:45169172..45169177,+	p11@SIX3
1.18e-32	FFCP PHASE2:Hg19::chr2:45169172..45169177,+	p11@SIX3

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{CL
-|id=CL:0000149
+|alt_id=
-|name=visual pigment cell
-|namespace=cell
-|def=
-|xref=
-|is_a=CL:0000147
-|synonym="pigment cell" BROAD []
 |comment=
-|alt_id=
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def=
-|subset=
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=CL:0000149
+|is_a=CL:0000147
+|is_obsolete=
 |located_in=
+|name=visual pigment cell
+|namespace=cell
+|obo_creation_date=
 |part_of=
+|preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
-|is_obsolete=
+|subset=
-|preceded_by=
+|synonym="pigment cell" BROAD []
+|union_of=
+|xref=
 }}

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CL:0000149: Difference between revisions

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Revision as of 10:14, 12 September 2014

Ontology Tree: Loaded from BioPortal

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