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{{CL
{{CL
|id=CL:0000239
|alt_id=
|name=brush border epithelial cell
|namespace=cell
|def=
|xref=
|is_a=CL:0000075
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000239
|is_a=CL:0000075
|is_obsolete=
|located_in=
|located_in=
|name=brush border epithelial cell
|namespace=cell
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:16, 12 September 2014

Name:brush border epithelial cell
Namespace:cell


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000075(columnar/cuboidal epithelial cell)



Children


is a:CL:0000584 (enterocyte),CL:0002306 (epithelial cell of proximal tubule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
  • 11848-124I3 (CD326+ enterocyte, pool1)
  • 11849-124I4 (CD326+ enterocyte, pool2)
  • 11850-124I5 (CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1)
  • 11851-124I6 (CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2)
  • 11852-124I7 (CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1)
  • 11853-124I8 (CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2)

Mouse (Mus musculus)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
  • 11848-124I3 (CD326+ enterocyte, pool1)
  • 11849-124I4 (CD326+ enterocyte, pool2)
  • 11850-124I5 (CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1)
  • 11851-124I6 (CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2)
  • 11852-124I7 (CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1)
  • 11853-124I8 (CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000239 (brush border epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data