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{{CL
{{CL
|id=CL:0002489
|alt_id=
|name=double negative thymocyte
|namespace=cell;;efo
|def="A thymocyte that lacks expression of CD4 and CD8." [GOC:tfm, MP:0002407]
|xref=
|is_a=CL:0000893
|synonym="double negative T cell" BROAD []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-12-06T03:03:38Z
|def="A thymocyte that lacks expression of CD4 and CD8." [GOC:tfm, MP:0002407]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002489
|is_a=CL:0000893
|is_obsolete=
|located_in=
|located_in=
|name=double negative thymocyte
|namespace=cell;;efo
|obo_creation_date=2010-12-06T03:03:38Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="double negative T cell" BROAD []
|union_of=
|xref=
}}
}}

Revision as of 10:27, 12 September 2014

Name:double negative thymocyte
Namespace:cell;;efo
Definition:"A thymocyte that lacks expression of CD4 and CD8." [GOC:tfm, MP:0002407]
Synonyms: "double negative T cell" BROAD []
Created by:tmeehan
Creation date:2010-12-06T03:03:38Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000893(thymocyte)



Children


is a:CL:0000806 (DN2 thymocyte),CL:0000807 (DN3 thymocyte),CL:0000808 (DN4 thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002489 (double negative thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_d7fe3cbb29c5301389797a5ecda92e8ep@chr2:162762361..162762364, +
3.29e-195FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_d7fe3cbb29c5301389797a5ecda92e8ep@chr2:162762361..162762364, +
1.55e-98FFCP PHASE2:Hg19::chr15:91989101..91989105,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022522..67022529,+#_4f296bc29aa42b5c8f51d97f32efea74p12@CES4A
1.55e-98FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_4f296bc29aa42b5c8f51d97f32efea74p1@uc003gfa.1
1.55e-98FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr10:11846830..11846860,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE2:Hg19::chr3:152204326..152204345,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr3:152204326..152204345, +
1.55e-98FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE2:Hg19::chr13:49078833..49078841,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr13:49078833..49078841, -
1.55e-98FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE1:Hg19::chr7:117926347..117926353,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE2:Hg19::chr21:47278815..47278834,+#_4f296bc29aa42b5c8f51d97f32efea74p6@PCBP3
1.55e-98FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:133657589..133657598, -
1.55e-98FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE1:Hg19::chr17:14101134..14101143,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr15:69972162..69972169, +
1.55e-98FFCP PHASE2:Hg19::chr6:128263833..128263838,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr6:128263833..128263838, -
1.55e-98FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_4f296bc29aa42b5c8f51d97f32efea74p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr10:11846830..11846860,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE2:Hg19::chr4:105805755..105805761,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:105805755..105805761, +
1.55e-98FFCP PHASE2:Hg19::chr8:75251775..75251785,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:75251775..75251785, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842537..175842553,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE1:Hg19::chr16:67022368..67022374,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr9:4544914..4544917, -
1.55e-98FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr3:152204326..152204345, +
1.55e-98FFCP PHASE1:Hg19::chr1:200990231..200990238,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE1:Hg19::chr17:14103251..14103258,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr17:14103251..14103258, +
1.55e-98FFCP PHASE1:Hg19::chr4:105805755..105805761,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:105805755..105805761, +
1.55e-98FFCP PHASE1:Hg19::chr13:49078833..49078841,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr13:49078833..49078841, -
1.55e-98FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE1:Hg19::chr8:75251775..75251785,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:75251775..75251785, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842537..175842553,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_4f296bc29aa42b5c8f51d97f32efea74p2@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr9:4544914..4544917,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr9:4544914..4544917, -
1.55e-98FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE1:Hg19::chr6:128263833..128263838,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr6:128263833..128263838, -
1.55e-98FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr15:69972162..69972169,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr15:69972162..69972169, +
1.55e-98FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE2:Hg19::chr9:87797549..87797564,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE2:Hg19::chr9:116857558..116857566,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE2:Hg19::chr8:51970952..51970959,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE1:Hg19::chr2:162762231..162762234,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE1:Hg19::chr7:38287827..38287832,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE2:Hg19::chr17:14103251..14103258,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr17:14103251..14103258, +
1.55e-98FFCP PHASE1:Hg19::chr7:19479837..19479844,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE2:Hg19::chr14:22962827..22962830,+#_4f296bc29aa42b5c8f51d97f32efea74p3@uc001weo.2
1.55e-98FFCP PHASE1:Hg19::chr9:87797549..87797564,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707420..134707442,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE1:Hg19::chr9:116857558..116857566,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_4f296bc29aa42b5c8f51d97f32efea74p1@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr8:51970952..51970959,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE1:Hg19::chr2:202521027..202521058,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE2:Hg19::chr8:16739475..16739490,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE1:Hg19::chr16:67022522..67022529,+#_4f296bc29aa42b5c8f51d97f32efea74p12@CES4A
1.55e-98FFCP PHASE2:Hg19::chr8:114877856..114877881,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_4f296bc29aa42b5c8f51d97f32efea74p2@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:128884938..128884941, -
1.55e-98FFCP PHASE2:Hg19::chr4:175842470..175842486,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:175842470..175842486, -
1.55e-98FFCP PHASE1:Hg19::chr2:146687090..146687095,+#_4f296bc29aa42b5c8f51d97f32efea74p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE2:Hg19::chr2:141989111..141989114,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr2:141989111..141989114, -
1.55e-98FFCP PHASE1:Hg19::chr8:16739475..16739490,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_4f296bc29aa42b5c8f51d97f32efea74p6@PCBP3
1.55e-98FFCP PHASE1:Hg19::chr4:134707449..134707458,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr5:24272119..24272147, -
1.55e-98FFCP PHASE2:Hg19::chr13:24623546..24623587,-#_4f296bc29aa42b5c8f51d97f32efea74p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE2:Hg19::chr4:2428062..2428080,+#_4f296bc29aa42b5c8f51d97f32efea74p1@uc003gfa.1

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