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{{CL
{{CL
|id=CL:0002566
|alt_id=
|name=dark melanocyte
|namespace=cell
|def="A melanocyte that appears darker due to content or amount of melanin granules." [GOC:tfm]
|xref=
|is_a=CL:0000148
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-01T05:57:11Z
|def="A melanocyte that appears darker due to content or amount of melanin granules." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002566
|is_a=CL:0000148
|is_obsolete=
|located_in=
|located_in=
|name=dark melanocyte
|namespace=cell
|obo_creation_date=2011-03-01T05:57:11Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:28, 12 September 2014

Name:dark melanocyte
Namespace:cell
Definition:"A melanocyte that appears darker due to content or amount of melanin granules." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-01T05:57:11Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000148(melanocyte)



Children


derives from:FF:0000089 (human dark melanocyte sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002566 (dark melanocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr9:15852076..15852082,+#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr9:15852076..15852082, +
5.42e-195FFCP PHASE2:Hg19::chr16:84074687..84074692,+#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr16:84074687..84074692, +
5.42e-195FFCP PHASE2:Hg19::chr15:42686326..42686331,+#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr15:42686326..42686331, +
5.42e-195FFCP PHASE2:Hg19::chr7:2657383..2657390,-#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr7:2657383..2657390, -
5.42e-195FFCP PHASE2:Hg19::chr19:34566717..34566729,-#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr19:34566717..34566729, -
5.42e-195FFCP PHASE1:Hg19::chr19:34566680..34566687,-#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr19:34566680..34566687, -
5.42e-195FFCP PHASE1:Hg19::chr9:15852076..15852082,+#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr9:15852076..15852082, +
5.42e-195FFCP PHASE2:Hg19::chr14:34638804..34638809,-#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr14:34638804..34638809, -
5.42e-195FFCP PHASE1:Hg19::chr19:34566717..34566729,-#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr19:34566717..34566729, -
5.42e-195FFCP PHASE1:Hg19::chr15:42686326..42686331,+#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr15:42686326..42686331, +
5.42e-195FFCP PHASE1:Hg19::chr16:84074687..84074692,+#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr16:84074687..84074692, +
5.42e-195FFCP PHASE1:Hg19::chr7:2657383..2657390,-#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr7:2657383..2657390, -
5.42e-195FFCP PHASE1:Hg19::chr14:34638804..34638809,-#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr14:34638804..34638809, -
5.42e-195FFCP PHASE2:Hg19::chr19:34566680..34566687,-#_b3bbeaec4b9f2b4a8cc31f3a2e266014p@chr19:34566680..34566687, -
9.37e-99FFCP PHASE2:Hg19::chr1:207083143..207083146,-#_109c50d1326b84246b74bab6fa014e5fp16@FAIM3
9.37e-99FFCP PHASE1:Hg19::chr16:84074748..84074755,+#_109c50d1326b84246b74bab6fa014e5fp@chr16:84074748..84074755, +
9.37e-99FFCP PHASE1:Hg19::chr15:55562451..55562456,-#_109c50d1326b84246b74bab6fa014e5fp15@RAB27A
9.37e-99FFCP PHASE1:Hg19::chr8:29605917..29605922,+#_109c50d1326b84246b74bab6fa014e5fp6@ENST00000517491
9.37e-99FFCP PHASE2:Hg19::chr6:4613693..4613698,-#_109c50d1326b84246b74bab6fa014e5fp@chr6:4613693..4613698, -
9.37e-99FFCP PHASE1:Hg19::chr16:84076377..84076384,-#_109c50d1326b84246b74bab6fa014e5fp@chr16:84076377..84076384, -
9.37e-99FFCP PHASE1:Hg19::chr1:207083143..207083146,-#_109c50d1326b84246b74bab6fa014e5fp16@FAIM3
9.37e-99FFCP PHASE2:Hg19::chr6:9251842..9251865,+#_109c50d1326b84246b74bab6fa014e5fp@chr6:9251842..9251865, +
9.37e-99FFCP PHASE1:Hg19::chr6:4613693..4613698,-#_109c50d1326b84246b74bab6fa014e5fp@chr6:4613693..4613698, -
9.37e-99FFCP PHASE2:Hg19::chr2:12531762..12531779,+#_109c50d1326b84246b74bab6fa014e5fp@chr2:12531762..12531779, +
9.37e-99FFCP PHASE2:Hg19::chr16:84074748..84074755,+#_109c50d1326b84246b74bab6fa014e5fp@chr16:84074748..84074755, +
9.37e-99FFCP PHASE2:Hg19::chr15:55562451..55562456,-#_109c50d1326b84246b74bab6fa014e5fp15@RAB27A
9.37e-99FFCP PHASE2:Hg19::chr8:29605917..29605922,+#_109c50d1326b84246b74bab6fa014e5fp6@ENST00000517491
9.37e-99FFCP PHASE1:Hg19::chr6:9251842..9251865,+#_109c50d1326b84246b74bab6fa014e5fp@chr6:9251842..9251865, +
9.37e-99FFCP PHASE1:Hg19::chr2:12531762..12531779,+#_109c50d1326b84246b74bab6fa014e5fp@chr2:12531762..12531779, +
9.37e-99FFCP PHASE2:Hg19::chr16:84076377..84076384,-#_109c50d1326b84246b74bab6fa014e5fp@chr16:84076377..84076384, -
2.55e-98FFCP PHASE2:Hg19::chr1:79215652..79215659,+#_ce603814f978903a84c1594eeba3c567p@chr1:79215652..79215659, +
2.55e-98FFCP PHASE2:Hg19::chr11:61112998..61113003,+#_ce603814f978903a84c1594eeba3c567p15@DAK
2.55e-98FFCP PHASE1:Hg19::chr20:61298826..61298834,+#_ce603814f978903a84c1594eeba3c567p13@SLCO4A1
2.55e-98FFCP PHASE2:Hg19::chr15:56649336..56649342,+#_ce603814f978903a84c1594eeba3c567p@chr15:56649336..56649342, +
2.55e-98FFCP PHASE2:Hg19::chr17:27334243..27334244,+#_ce603814f978903a84c1594eeba3c567p@chr17:27334243..27334244, +
2.55e-98FFCP PHASE2:Hg19::chr16:69176140..69176147,+#_ce603814f978903a84c1594eeba3c567p@chr16:69176140..69176147, +
2.55e-98FFCP PHASE1:Hg19::chr1:79215652..79215659,+#_ce603814f978903a84c1594eeba3c567p@chr1:79215652..79215659, +
2.55e-98FFCP PHASE1:Hg19::chr11:61112998..61113003,+#_ce603814f978903a84c1594eeba3c567p15@DAK
2.55e-98FFCP PHASE1:Hg19::chr15:56649336..56649342,+#_ce603814f978903a84c1594eeba3c567p@chr15:56649336..56649342, +
2.55e-98FFCP PHASE1:Hg19::chr17:27334243..27334244,+#_ce603814f978903a84c1594eeba3c567p@chr17:27334243..27334244, +
2.55e-98FFCP PHASE2:Hg19::chr20:61298826..61298834,+#_ce603814f978903a84c1594eeba3c567p13@SLCO4A1
2.55e-98FFCP PHASE1:Hg19::chr16:69176140..69176147,+#_ce603814f978903a84c1594eeba3c567p@chr16:69176140..69176147, +
1.23e-66FFCP PHASE1:Hg19::chr14:34638833..34638843,-#_5a2c7b63486bae675c6d6bee20e0e58dp@chr14:34638833..34638843, -
1.23e-66FFCP PHASE1:Hg19::chr1:76559872..76559889,+#_5a2c7b63486bae675c6d6bee20e0e58dp@chr1:76559872..76559889, +
1.23e-66FFCP PHASE1:Hg19::chr10:93335091..93335099,-#_5a2c7b63486bae675c6d6bee20e0e58dp6@BC044257
1.23e-66FFCP PHASE1:Hg19::chr9:12711574..12711585,+#_5a2c7b63486bae675c6d6bee20e0e58dp@chr9:12711574..12711585, +
1.23e-66FFCP PHASE1:Hg19::chr10:4046629..4046639,+#_5a2c7b63486bae675c6d6bee20e0e58dp@chr10:4046629..4046639, +
1.23e-66FFCP PHASE1:Hg19::chr1:1497417..1497420,-#_5a2c7b63486bae675c6d6bee20e0e58dp5@AK129493
1.23e-66FFCP PHASE2:Hg19::chr16:68678900..68678907,+#_5a2c7b63486bae675c6d6bee20e0e58dp11@CDH3
1.23e-66FFCP PHASE2:Hg19::chr14:34638833..34638843,-#_5a2c7b63486bae675c6d6bee20e0e58dp@chr14:34638833..34638843, -
1.23e-66FFCP PHASE2:Hg19::chr1:76559872..76559889,+#_5a2c7b63486bae675c6d6bee20e0e58dp@chr1:76559872..76559889, +
1.23e-66FFCP PHASE2:Hg19::chr10:93335091..93335099,-#_5a2c7b63486bae675c6d6bee20e0e58dp6@BC044257
1.23e-66FFCP PHASE2:Hg19::chr9:12711574..12711585,+#_5a2c7b63486bae675c6d6bee20e0e58dp@chr9:12711574..12711585, +
1.23e-66FFCP PHASE2:Hg19::chr10:4046629..4046639,+#_5a2c7b63486bae675c6d6bee20e0e58dp@chr10:4046629..4046639, +
1.23e-66FFCP PHASE1:Hg19::chr16:68678900..68678907,+#_5a2c7b63486bae675c6d6bee20e0e58dp11@CDH3
1.23e-66FFCP PHASE2:Hg19::chr1:1497417..1497420,-#_5a2c7b63486bae675c6d6bee20e0e58dp5@AK129493
2.39e-66FFCP PHASE2:Hg19::chr20:55091968..55091976,+#_0f86e6e104874ef9ccaff27f8d738535p6@FAM209A
2.39e-66FFCP PHASE2:Hg19::chr16:27771451..27771455,+#_0f86e6e104874ef9ccaff27f8d738535p@chr16:27771451..27771455, +
2.39e-66FFCP PHASE2:Hg19::chr9:12711878..12711885,+#_0f86e6e104874ef9ccaff27f8d738535p@chr9:12711878..12711885, +
2.39e-66FFCP PHASE2:Hg19::chr9:103191797..103191807,+#_0f86e6e104874ef9ccaff27f8d738535p22@C9orf30
2.39e-66FFCP PHASE1:Hg19::chr21:38568227..38568233,+#_0f86e6e104874ef9ccaff27f8d738535p@chr21:38568227..38568233, +
2.39e-66FFCP PHASE1:Hg19::chr2:37594367..37594376,+#_0f86e6e104874ef9ccaff27f8d738535p12@QPCT
2.39e-66FFCP PHASE1:Hg19::chr18:67872552..67872584,-#_0f86e6e104874ef9ccaff27f8d738535p@chr18:67872552..67872584, -
2.39e-66FFCP PHASE2:Hg19::chr7:107338356..107338367,+#_0f86e6e104874ef9ccaff27f8d738535p@chr7:107338356..107338367, +
2.39e-66FFCP PHASE2:Hg19::chr2:166702828..166702850,-#_0f86e6e104874ef9ccaff27f8d738535p4@ENST00000428888
2.39e-66FFCP PHASE2:Hg19::chr18:67872703..67872710,-#_0f86e6e104874ef9ccaff27f8d738535p@chr18:67872703..67872710, -
2.39e-66FFCP PHASE1:Hg19::chr20:55091968..55091976,+#_0f86e6e104874ef9ccaff27f8d738535p6@FAM209A
2.39e-66FFCP PHASE1:Hg19::chr16:27771451..27771455,+#_0f86e6e104874ef9ccaff27f8d738535p@chr16:27771451..27771455, +
2.39e-66FFCP PHASE1:Hg19::chr9:12711878..12711885,+#_0f86e6e104874ef9ccaff27f8d738535p@chr9:12711878..12711885, +
2.39e-66FFCP PHASE2:Hg19::chrX:133340200..133340206,+#_0f86e6e104874ef9ccaff27f8d738535p@chrX:133340200..133340206, +
2.39e-66FFCP PHASE2:Hg19::chr14:93559337..93559385,-#_0f86e6e104874ef9ccaff27f8d738535p@chr14:93559337..93559385, -
2.39e-66FFCP PHASE2:Hg19::chr10:106240041..106240047,-#_0f86e6e104874ef9ccaff27f8d738535p1@ENST00000447860
2.39e-66FFCP PHASE2:Hg19::chr9:12712159..12712169,+#_0f86e6e104874ef9ccaff27f8d738535p@chr9:12712159..12712169, +
2.39e-66FFCP PHASE2:Hg19::chr8:72870195..72870205,+#_0f86e6e104874ef9ccaff27f8d738535p@chr8:72870195..72870205, +
2.39e-66FFCP PHASE1:Hg19::chr7:107338356..107338367,+#_0f86e6e104874ef9ccaff27f8d738535p@chr7:107338356..107338367, +
2.39e-66FFCP PHASE1:Hg19::chr9:103191797..103191807,+#_0f86e6e104874ef9ccaff27f8d738535p22@C9orf30
2.39e-66FFCP PHASE1:Hg19::chr2:166702828..166702850,-#_0f86e6e104874ef9ccaff27f8d738535p4@ENST00000428888
2.39e-66FFCP PHASE1:Hg19::chr14:93559337..93559385,-#_0f86e6e104874ef9ccaff27f8d738535p@chr14:93559337..93559385, -
2.39e-66FFCP PHASE1:Hg19::chr18:67872703..67872710,-#_0f86e6e104874ef9ccaff27f8d738535p@chr18:67872703..67872710, -
2.39e-66FFCP PHASE1:Hg19::chrX:133340200..133340206,+#_0f86e6e104874ef9ccaff27f8d738535p@chrX:133340200..133340206, +
2.39e-66FFCP PHASE2:Hg19::chr21:38568227..38568233,+#_0f86e6e104874ef9ccaff27f8d738535p@chr21:38568227..38568233, +
2.39e-66FFCP PHASE1:Hg19::chr10:106240041..106240047,-#_0f86e6e104874ef9ccaff27f8d738535p1@ENST00000447860
2.39e-66FFCP PHASE2:Hg19::chr2:37594367..37594376,+#_0f86e6e104874ef9ccaff27f8d738535p12@QPCT
2.39e-66FFCP PHASE2:Hg19::chr18:67872552..67872584,-#_0f86e6e104874ef9ccaff27f8d738535p@chr18:67872552..67872584, -
2.39e-66FFCP PHASE1:Hg19::chr9:12712159..12712169,+#_0f86e6e104874ef9ccaff27f8d738535p@chr9:12712159..12712169, +
2.39e-66FFCP PHASE1:Hg19::chr8:72870195..72870205,+#_0f86e6e104874ef9ccaff27f8d738535p@chr8:72870195..72870205, +
4.66e-66FFCP PHASE1:Hg19::chr9:12704281..12704285,+#_c2ba42fe4f8c555fd96b8d9259a527a9p@chr9:12704281..12704285, +
4.66e-66FFCP PHASE2:Hg19::chr18:67872642..67872645,-#_c2ba42fe4f8c555fd96b8d9259a527a9p@chr18:67872642..67872645, -
4.66e-66FFCP PHASE1:Hg19::chr7:104398152..104398162,-#_c2ba42fe4f8c555fd96b8d9259a527a9p1@ENST00000433514
4.66e-66FFCP PHASE1:Hg19::chr8:62438700..62438702,-#_c2ba42fe4f8c555fd96b8d9259a527a9p28@ASPH
4.66e-66FFCP PHASE2:Hg19::chr8:12668962..12668969,-#_c2ba42fe4f8c555fd96b8d9259a527a9p2@ENST00000534827
4.66e-66FFCP PHASE2:Hg19::chr19:3557773..3557778,-#_c2ba42fe4f8c555fd96b8d9259a527a9p13@MFSD12
4.66e-66FFCP PHASE1:Hg19::chr22:26899907..26899914,-#_c2ba42fe4f8c555fd96b8d9259a527a9p@chr22:26899907..26899914, -
4.66e-66FFCP PHASE2:Hg19::chr14:21938873..21938912,-#_c2ba42fe4f8c555fd96b8d9259a527a9p@chr14:21938873..21938912, -
4.66e-66FFCP PHASE2:Hg19::chr13:103433284..103433289,+#_c2ba42fe4f8c555fd96b8d9259a527a9p@chr13:103433284..103433289, +
4.66e-66FFCP PHASE1:Hg19::chr18:67872642..67872645,-#_c2ba42fe4f8c555fd96b8d9259a527a9p@chr18:67872642..67872645, -
4.66e-66FFCP PHASE2:Hg19::chr3:69987438..69987455,+#_c2ba42fe4f8c555fd96b8d9259a527a9p@chr3:69987438..69987455, +
4.66e-66FFCP PHASE2:Hg19::chr5:156015602..156015609,+#_c2ba42fe4f8c555fd96b8d9259a527a9p@chr5:156015602..156015609, +
4.66e-66FFCP PHASE1:Hg19::chr8:12668962..12668969,-#_c2ba42fe4f8c555fd96b8d9259a527a9p2@ENST00000534827
4.66e-66FFCP PHASE1:Hg19::chr19:3557773..3557778,-#_c2ba42fe4f8c555fd96b8d9259a527a9p13@MFSD12

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