DOID:3151: Difference between revisions

Revision as of 10:34, 12 September 2014

skin squamous cell carcinoma

Namespace:

disease_ontology

Xrefs:

Synonyms:

"Epidermoid skin carcinoma" EXACT [NCI2004_11_17:C4819]
"squamous cell carcinoma of skin" RELATED []
"squamous cell carcinoma of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:254651007]

Ontology association Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies. link to ontology dataset data

Parents

is_a:	DOID:3451(skin carcinoma)

Children

is a:	DOID:3149 (keratoacanthoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

10713-109I2
10791-110H8 (keratoacanthoma cell line:HKA-1)

Mouse (Mus musculus)

10713-109I2
10791-110H8 (keratoacanthoma cell line:HKA-1)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3151 (skin squamous cell carcinoma), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Show entries

Search:

P-value	FFCP	Short description
2.55e-98	FFCP PHASE1:Hg19::chr7:101448249..101448254,+	p@chr7:101448249..101448254, +
2.55e-98	FFCP PHASE2:Hg19::chr7:101448249..101448254,+	p@chr7:101448249..101448254, +
2.55e-98	FFCP PHASE1:Hg19::chr7:101448277..101448287,+	p@chr7:101448277..101448287, +
2.55e-98	FFCP PHASE1:Hg19::chr7:101448101..101448113,+	p@chr7:101448101..101448113, +
2.55e-98	FFCP PHASE1:Hg19::chr8:123875147..123875159,+	p26@ZHX2
2.55e-98	FFCP PHASE2:Hg19::chr7:101448277..101448287,+	p@chr7:101448277..101448287, +
2.55e-98	FFCP PHASE1:Hg19::chr1:153431372..153431378,-	p4@S100A7
2.55e-98	FFCP PHASE2:Hg19::chr7:101448101..101448113,+	p@chr7:101448101..101448113, +
2.55e-98	FFCP PHASE1:Hg19::chr7:101448176..101448184,+	p@chr7:101448176..101448184, +
2.55e-98	FFCP PHASE2:Hg19::chr8:123875147..123875159,+	p26@ZHX2
2.55e-98	FFCP PHASE2:Hg19::chr1:153431372..153431378,-	p4@S100A7
2.55e-98	FFCP PHASE2:Hg19::chr7:101448176..101448184,+	p@chr7:101448176..101448184, +
1.23e-66	FFCP PHASE1:Hg19::chr9:97563078..97563086,+	p@chr9:97563078..97563086, +
1.23e-66	FFCP PHASE2:Hg19::chr9:97563078..97563086,+	p@chr9:97563078..97563086, +
1.23e-66	FFCP PHASE1:Hg19::chr20:49047228..49047236,-	p@chr20:49047228..49047236, -
1.23e-66	FFCP PHASE2:Hg19::chr20:49047228..49047236,-	p@chr20:49047228..49047236, -
2.39e-66	FFCP PHASE1:Hg19::chr17:19648916..19648937,-	p10@ALDH3A1
2.39e-66	FFCP PHASE1:Hg19::chr18:61254400..61254410,+	p8@SERPINB13
2.39e-66	FFCP PHASE1:Hg19::chr1:76127067..76127073,-	p@chr1:76127067..76127073, -
2.39e-66	FFCP PHASE2:Hg19::chr1:76127067..76127073,-	p@chr1:76127067..76127073, -
2.39e-66	FFCP PHASE2:Hg19::chr18:61254400..61254410,+	p8@SERPINB13
2.39e-66	FFCP PHASE2:Hg19::chr17:19648916..19648937,-	p10@ALDH3A1
4.66e-66	FFCP PHASE1:Hg19::chr3:193809263..193809278,+	p1@ENST00000457815
4.66e-66	FFCP PHASE2:Hg19::chr1:10980427..10980431,-	p@chr1:10980427..10980431, -
4.66e-66	FFCP PHASE2:Hg19::chr13:28542963..28542973,-	p1@CU677005
4.66e-66	FFCP PHASE2:Hg19::chr3:193809263..193809278,+	p1@ENST00000457815
4.66e-66	FFCP PHASE1:Hg19::chr19:51517875..51517889,-	p3@AK026045
4.66e-66	FFCP PHASE1:Hg19::chr17:48072063..48072074,-	p5@DLX3
4.66e-66	FFCP PHASE1:Hg19::chr2:178179611..178179619,-	p4@ENST00000443132
4.66e-66	FFCP PHASE1:Hg19::chr1:18085798..18085805,+	p@chr1:18085798..18085805, +
4.66e-66	FFCP PHASE2:Hg19::chr19:51517875..51517889,-	p3@AK026045
4.66e-66	FFCP PHASE2:Hg19::chr2:178179611..178179619,-	p4@ENST00000443132
4.66e-66	FFCP PHASE2:Hg19::chr1:18085798..18085805,+	p@chr1:18085798..18085805, +
4.66e-66	FFCP PHASE1:Hg19::chr13:28542963..28542973,-	p1@CU677005
4.66e-66	FFCP PHASE2:Hg19::chr17:48072063..48072074,-	p5@DLX3
4.66e-66	FFCP PHASE1:Hg19::chr1:10980427..10980431,-	p@chr1:10980427..10980431, -
1.46e-50	FFCP PHASE2:Hg19::chr5:1884077..1884085,+	p1@ENST00000506335
1.46e-50	FFCP PHASE1:Hg19::chr1:151826151..151826159,-	p3@THEM5
1.46e-50	FFCP PHASE2:Hg19::chr1:151826151..151826159,-	p3@THEM5
1.46e-50	FFCP PHASE1:Hg19::chr16:55600644..55600645,+	p2@CAPNS2
1.46e-50	FFCP PHASE2:Hg19::chr16:55600644..55600645,+	p2@CAPNS2
1.46e-50	FFCP PHASE1:Hg19::chr5:1884077..1884085,+	p1@ENST00000506335
2.42e-50	FFCP PHASE2:Hg19::chr7:101448204..101448229,+	p@chr7:101448204..101448229, +
2.42e-50	FFCP PHASE1:Hg19::chr1:86921028..86921032,+	p@chr1:86921028..86921032, +
2.42e-50	FFCP PHASE2:Hg19::chr1:86921028..86921032,+	p@chr1:86921028..86921032, +
2.42e-50	FFCP PHASE1:Hg19::chr8:123875131..123875140,+	p25@ZHX2
2.42e-50	FFCP PHASE1:Hg19::chr17:77774350..77774360,+	p@chr17:77774350..77774360, +
2.42e-50	FFCP PHASE2:Hg19::chr8:123875131..123875140,+	p25@ZHX2
2.42e-50	FFCP PHASE2:Hg19::chr17:77774350..77774360,+	p@chr17:77774350..77774360, +
2.42e-50	FFCP PHASE1:Hg19::chr12:130647145..130647153,+	p3@FZD10
2.42e-50	FFCP PHASE2:Hg19::chr12:130647145..130647153,+	p3@FZD10
2.42e-50	FFCP PHASE1:Hg19::chr8:120233966..120233975,+	p@chr8:120233966..120233975, +
2.42e-50	FFCP PHASE2:Hg19::chr8:120233966..120233975,+	p@chr8:120233966..120233975, +
2.42e-50	FFCP PHASE1:Hg19::chr7:101448204..101448229,+	p@chr7:101448204..101448229, +
3.99e-50	FFCP PHASE1:Hg19::chr2:234526341..234526346,+	p1@UGT1A8
3.99e-50	FFCP PHASE2:Hg19::chr2:234526341..234526346,+	p1@UGT1A8
6.58e-50	FFCP PHASE1:Hg19::chr10:127591699..127591713,-	p@chr10:127591699..127591713, -
6.58e-50	FFCP PHASE1:Hg19::chr3:136885144..136885147,+	p@chr3:136885144..136885147, +
6.58e-50	FFCP PHASE2:Hg19::chr3:136885144..136885147,+	p@chr3:136885144..136885147, +
6.58e-50	FFCP PHASE1:Hg19::chr1:153430422..153430443,-	p3@S100A7
6.58e-50	FFCP PHASE2:Hg19::chr10:54259346..54259353,+	p@chr10:54259346..54259353, +
6.58e-50	FFCP PHASE1:Hg19::chr10:54259346..54259353,+	p@chr10:54259346..54259353, +
6.58e-50	FFCP PHASE2:Hg19::chr1:153430422..153430443,-	p3@S100A7
6.58e-50	FFCP PHASE1:Hg19::chr14:65406349..65406358,+	p@chr14:65406349..65406358, +
6.58e-50	FFCP PHASE1:Hg19::chr1:118570948..118570964,-	p@chr1:118570948..118570964, -
6.58e-50	FFCP PHASE2:Hg19::chr1:118570948..118570964,-	p@chr1:118570948..118570964, -
6.58e-50	FFCP PHASE1:Hg19::chr4:152117165..152117168,+	p@chr4:152117165..152117168, +
6.58e-50	FFCP PHASE2:Hg19::chr4:152117165..152117168,+	p@chr4:152117165..152117168, +
6.58e-50	FFCP PHASE2:Hg19::chr14:65406349..65406358,+	p@chr14:65406349..65406358, +
6.58e-50	FFCP PHASE2:Hg19::chr10:127591699..127591713,-	p@chr10:127591699..127591713, -
6.62e-41	FFCP PHASE1:Hg19::chr10:5567644..5567657,+	p@chr10:5567644..5567657, +
6.62e-41	FFCP PHASE2:Hg19::chr10:5567644..5567657,+	p@chr10:5567644..5567657, +
6.62e-41	FFCP PHASE1:Hg19::chr1:152572708..152572714,+	p1@LCE3C
6.62e-41	FFCP PHASE2:Hg19::chr1:152572708..152572714,+	p1@LCE3C
6.62e-41	FFCP PHASE2:Hg19::chr17:39674844..39674854,+	p@chr17:39674844..39674854, +
6.62e-41	FFCP PHASE1:Hg19::chr17:39674844..39674854,+	p@chr17:39674844..39674854, +
9.91e-41	FFCP PHASE2:Hg19::chr8:123875175..123875188,+	p22@ZHX2
9.91e-41	FFCP PHASE2:Hg19::chr3:141678730..141678768,-	p@chr3:141678730..141678768, -
9.91e-41	FFCP PHASE1:Hg19::chr17:39675950..39675974,-	p@chr17:39675950..39675974, -
9.91e-41	FFCP PHASE1:Hg19::chr5:67829374..67829382,-	p1@ENST00000515199
9.91e-41	FFCP PHASE2:Hg19::chr5:67829374..67829382,-	p1@ENST00000515199
9.91e-41	FFCP PHASE2:Hg19::chr17:39675950..39675974,-	p@chr17:39675950..39675974, -
9.91e-41	FFCP PHASE1:Hg19::chr8:123875175..123875188,+	p22@ZHX2
9.91e-41	FFCP PHASE1:Hg19::chr3:141678730..141678768,-	p@chr3:141678730..141678768, -
1.48e-40	FFCP PHASE1:Hg19::chr17:39767356..39767365,+	p@chr17:39767356..39767365, +
1.48e-40	FFCP PHASE2:Hg19::chr17:39767356..39767365,+	p@chr17:39767356..39767365, +
1.48e-40	FFCP PHASE2:Hg19::chr10:4951559..4951578,+	p@chr10:4951559..4951578, +
1.48e-40	FFCP PHASE1:Hg19::chr10:4951559..4951578,+	p@chr10:4951559..4951578, +
2.21e-40	FFCP PHASE1:Hg19::chr22:48134043..48134048,+	p@chr22:48134043..48134048, +
2.21e-40	FFCP PHASE2:Hg19::chr22:48134043..48134048,+	p@chr22:48134043..48134048, +
2.21e-40	FFCP PHASE1:Hg19::chr21:23573043..23573054,+	p@chr21:23573043..23573054, +
2.21e-40	FFCP PHASE2:Hg19::chr21:23573043..23573054,+	p@chr21:23573043..23573054, +
3.3e-40	FFCP PHASE2:Hg19::chr10:127591732..127591739,-	p@chr10:127591732..127591739, -
3.3e-40	FFCP PHASE1:Hg19::chr10:127591732..127591739,-	p@chr10:127591732..127591739, -
3.3e-40	FFCP PHASE1:Hg19::chr4:15937680..15937694,+	p@chr4:15937680..15937694, +
3.3e-40	FFCP PHASE2:Hg19::chr4:15937680..15937694,+	p@chr4:15937680..15937694, +
3.3e-40	FFCP PHASE1:Hg19::chr5:16492681..16492683,+	p@chr5:16492681..16492683, +
3.3e-40	FFCP PHASE1:Hg19::chr8:120128977..120128984,-	p@chr8:120128977..120128984, -
3.3e-40	FFCP PHASE1:Hg19::chr17:7990883..7990893,-	p5@ALOX12B
3.3e-40	FFCP PHASE2:Hg19::chr8:120128977..120128984,-	p@chr8:120128977..120128984, -

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{DOID
-|id=DOID:3151
+|alt_id=
-|name=skin squamous cell carcinoma
-|namespace=disease_ontology
-|def=
-|xref=NCI:C4819;;SNOMEDCT_2010_1_31:254651007;;UMLS_CUI:C0553723
-|is_a=DOID:3451
-|synonym="Epidermoid skin carcinoma" EXACT [NCI2004_11_17:C4819];;"squamous cell carcinoma of skin" RELATED [];;"squamous cell carcinoma of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:254651007]
 |comment=
-|alt_id=
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def=
-|subset=
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=DOID:3151
+|is_a=DOID:3451
+|is_obsolete=
 |located_in=
+|name=skin squamous cell carcinoma
+|namespace=disease_ontology
+|obo_creation_date=
 |part_of=
+|preceded_by=
 |property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
-|is_obsolete=
+|subset=
-|preceded_by=
+|synonym="Epidermoid skin carcinoma" EXACT [NCI2004_11_17:C4819];;"squamous cell carcinoma of skin" RELATED [];;"squamous cell carcinoma of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:254651007]
+|union_of=
+|xref=NCI:C4819;;SNOMEDCT_2010_1_31:254651007;;UMLS_CUI:C0553723
 }}

Personal tools

DOID:3151: Difference between revisions - resource_browser

Search

Human

Mouse

Rat

Dog

Chicken

Macaque

Cross species

Other

Tools

DOID:3151: Difference between revisions

From FANTOM5_SSTAR

Revision as of 10:34, 12 September 2014

Ontology Tree: Loaded from BioPortal

FF samples

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0