Personal tools

DOID:4468: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:4468
|alt_id=DOID:2617;;DOID:4940
|name=clear cell adenocarcinoma
|namespace=disease_ontology
|def="An adenocarcinoma that derives_from epithelial cells which have clear cytoplasm." [url:http://www.pathconsultddx.com/pathCon/diagnosis?pii=S1559-8675%2806%2970166-8]
|xref=MSH:D008649;;NCI:C4072;;SNOMEDCT_2010_1_31:189633003;;SNOMEDCT_2010_1_31:189861007;;SNOMEDCT_2010_1_31:2221008;;SNOMEDCT_2010_1_31:30546008;;SNOMEDCT_2010_1_31:80727009;;UMLS_CUI:C0025490;;UMLS_CUI:C0206681;;UMLS_CUI:C0334322
|is_a=DOID:299
|synonym="Clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:30546008];;"Clear cell adenocarcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189633003];;"malignant Mesonephroma" EXACT [NCI2004_11_17:C4072];;"Mesonephroid Clear cell carcinoma" EXACT [NCI2004_11_17:C3766];;"mesonephroma" EXACT [];;"Mesonephroma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189861007];;"Mesonephroma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2221008];;"Water-Clear cell adenocarcinoma" EXACT [NCI2004_11_17:C4156];;"Water-clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:80727009];;"Water-clear cell carcinoma" EXACT [];;"Wolffian duct neoplasm" EXACT [NCI2004_11_17:C6782]
|comment=
|comment=
|alt_id=DOID:2617;;DOID:4940
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An adenocarcinoma that derives_from epithelial cells which have clear cytoplasm." [url:http://www.pathconsultddx.com/pathCon/diagnosis?pii
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:4468
|is_a=DOID:299
|is_obsolete=
|located_in=
|located_in=
|name=clear cell adenocarcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:30546008];;"Clear cell adenocarcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189633003];;"malignant Mesonephroma" EXACT [NCI2004_11_17:C4072];;"Mesonephroid Clear cell carcinoma" EXACT [NCI2004_11_17:C3766];;"mesonephroma" EXACT [];;"Mesonephroma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189861007];;"Mesonephroma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2221008];;"Water-Clear cell adenocarcinoma" EXACT [NCI2004_11_17:C4156];;"Water-clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:80727009];;"Water-clear cell carcinoma" EXACT [];;"Wolffian duct neoplasm" EXACT [NCI2004_11_17:C6782]
|union_of=
|xref=MSH:D008649;;NCI:C4072;;SNOMEDCT_2010_1_31:189633003;;SNOMEDCT_2010_1_31:189861007;;SNOMEDCT_2010_1_31:2221008;;SNOMEDCT_2010_1_31:30546008;;SNOMEDCT_2010_1_31:80727009;;UMLS_CUI:C0025490;;UMLS_CUI:C0206681;;UMLS_CUI:C0334322
}}
}}

Revision as of 10:35, 12 September 2014

Name:clear cell adenocarcinoma
Namespace:disease_ontology
Definition:"An adenocarcinoma that derives_from epithelial cells which have clear cytoplasm." [url:http://www.pathconsultddx.com/pathCon/diagnosis?pii
Xrefs:
links:

MSH:D008649
NCI:C4072
SNOMEDCT_2010_1_31:189633003
SNOMEDCT_2010_1_31:189861007
SNOMEDCT_2010_1_31:2221008
SNOMEDCT_2010_1_31:30546008
SNOMEDCT_2010_1_31:80727009
UMLS_CUI:C0025490
UMLS_CUI:C0206681

UMLS_CUI:C0334322
Synonyms: "Clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:30546008]
"Clear cell adenocarcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189633003]
"malignant Mesonephroma" EXACT [NCI2004_11_17:C4072]
"Mesonephroid Clear cell carcinoma" EXACT [NCI2004_11_17:C3766]
"mesonephroma" EXACT []
"Mesonephroma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189861007]
"Mesonephroma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2221008]
"Water-Clear cell adenocarcinoma" EXACT [NCI2004_11_17:C4156]
"Water-clear cell adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:80727009]
"Water-clear cell carcinoma" EXACT []
"Wolffian duct neoplasm" EXACT [NCI2004_11_17:C6782]
Alt_id: DOID:2617
DOID:4940

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:299(adenocarcinoma)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4468 (clear cell adenocarcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data