Personal tools

DOID:4929: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:4929
|alt_id=
|name=tubular adenocarcinoma
|namespace=disease_ontology
|def="An adenocarcinoma that derives_from epithelial cells originating in glandular tissue. The tumor has branched angular tubules embedded in a loose fibrous stroma." [url:http://onlinelibrary.wiley.com/store/10.1002/dc.2161/asset/2161_ftp.pdf?v=1&t=gpju9amb&s=f4e446d3a3c1e806325be5d11994dc6fb4670edf]
|xref=MSH:D000230;;NCI:C65192;;SNOMEDCT_2010_1_31:4631006;;UMLS_CUI:C0205645
|is_a=DOID:299
|synonym="tubular adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:4631006];;"tubular carcinoma" EXACT [NCI2004_11_17:C3682]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An adenocarcinoma that derives_from epithelial cells originating in glandular tissue. The tumor has branched angular tubules embedded in a loose fibrous stroma." [url:http://onlinelibrary.wiley.com/store/10.1002/dc.2161/asset/2161_ftp.pdf?v
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:4929
|is_a=DOID:299
|is_obsolete=
|located_in=
|located_in=
|name=tubular adenocarcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="tubular adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:4631006];;"tubular carcinoma" EXACT [NCI2004_11_17:C3682]
|union_of=
|xref=MSH:D000230;;NCI:C65192;;SNOMEDCT_2010_1_31:4631006;;UMLS_CUI:C0205645
}}
}}

Revision as of 10:36, 12 September 2014

Name:tubular adenocarcinoma
Namespace:disease_ontology
Definition:"An adenocarcinoma that derives_from epithelial cells originating in glandular tissue. The tumor has branched angular tubules embedded in a loose fibrous stroma." [url:http://onlinelibrary.wiley.com/store/10.1002/dc.2161/asset/2161_ftp.pdf?v
Xrefs:
links:

MSH:D000230
NCI:C65192
SNOMEDCT_2010_1_31:4631006

UMLS_CUI:C0205645
Synonyms: "tubular adenocarcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:4631006]
"tubular carcinoma" EXACT [NCI2004_11_17:C3682]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:299(adenocarcinoma)



Children


is a:FF:10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB),FF:10628-108H7 (),FF:10797-110I5 (tubular adenocarcinoma cell line:SUIT-2)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4929 (tubular adenocarcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.75e-130FFCP PHASE2:Hg19::chr10:114885594..114885600,+#_8c1feb621ff4fe9813f07ca3091877a4p@chr10:114885594..114885600, +
1.75e-130FFCP PHASE1:Hg19::chr10:114885594..114885600,+#_8c1feb621ff4fe9813f07ca3091877a4p@chr10:114885594..114885600, +
1.55e-98FFCP PHASE2:Hg19::chr19:49545691..49545692,+#_6f559237635f45a587e54917aa4b5c95p@chr19:49545691..49545692, +
1.55e-98FFCP PHASE1:Hg19::chr19:15923954..15923958,-#_6f559237635f45a587e54917aa4b5c95p@chr19:15923954..15923958, -
1.55e-98FFCP PHASE1:Hg19::chr10:114885416..114885423,+#_6f559237635f45a587e54917aa4b5c95p@chr10:114885416..114885423, +
1.55e-98FFCP PHASE1:Hg19::chr2:113425862..113425864,+#_6f559237635f45a587e54917aa4b5c95p@chr2:113425862..113425864, +
1.55e-98FFCP PHASE2:Hg19::chr19:15923954..15923958,-#_6f559237635f45a587e54917aa4b5c95p@chr19:15923954..15923958, -
1.55e-98FFCP PHASE2:Hg19::chr2:113425862..113425864,+#_6f559237635f45a587e54917aa4b5c95p@chr2:113425862..113425864, +
1.55e-98FFCP PHASE2:Hg19::chr16:1128952..1128957,+#_6f559237635f45a587e54917aa4b5c95p4@SSTR5
1.55e-98FFCP PHASE1:Hg19::chr11:65144695..65144697,-#_6f559237635f45a587e54917aa4b5c95p@chr11:65144695..65144697, -
1.55e-98FFCP PHASE2:Hg19::chr7:98796685..98796688,-#_6f559237635f45a587e54917aa4b5c95p@chr7:98796685..98796688, -
1.55e-98FFCP PHASE2:Hg19::chr11:65144695..65144697,-#_6f559237635f45a587e54917aa4b5c95p@chr11:65144695..65144697, -
1.55e-98FFCP PHASE1:Hg19::chr16:1128952..1128957,+#_6f559237635f45a587e54917aa4b5c95p4@SSTR5
1.55e-98FFCP PHASE1:Hg19::chr7:98796685..98796688,-#_6f559237635f45a587e54917aa4b5c95p@chr7:98796685..98796688, -
1.55e-98FFCP PHASE2:Hg19::chr15:20093569..20093572,+#_6f559237635f45a587e54917aa4b5c95p@chr15:20093569..20093572, +
1.55e-98FFCP PHASE2:Hg19::chr7:99779265..99779276,+#_6f559237635f45a587e54917aa4b5c95p15@STAG3
1.55e-98FFCP PHASE2:Hg19::chr16:1129001..1129004,+#_6f559237635f45a587e54917aa4b5c95p6@SSTR5
1.55e-98FFCP PHASE1:Hg19::chr15:20093569..20093572,+#_6f559237635f45a587e54917aa4b5c95p@chr15:20093569..20093572, +
1.55e-98FFCP PHASE1:Hg19::chr7:99779265..99779276,+#_6f559237635f45a587e54917aa4b5c95p15@STAG3
1.55e-98FFCP PHASE1:Hg19::chr16:1129001..1129004,+#_6f559237635f45a587e54917aa4b5c95p6@SSTR5
1.55e-98FFCP PHASE2:Hg19::chr7:45928212..45928215,+#_6f559237635f45a587e54917aa4b5c95p14@IGFBP1
1.55e-98FFCP PHASE1:Hg19::chr2:109605568..109605573,-#_6f559237635f45a587e54917aa4b5c95p6@EDAR
1.55e-98FFCP PHASE1:Hg19::chr9:38059452..38059455,-#_6f559237635f45a587e54917aa4b5c95p@chr9:38059452..38059455, -
1.55e-98FFCP PHASE2:Hg19::chr2:109605568..109605573,-#_6f559237635f45a587e54917aa4b5c95p6@EDAR
1.55e-98FFCP PHASE1:Hg19::chr7:45928212..45928215,+#_6f559237635f45a587e54917aa4b5c95p14@IGFBP1
1.55e-98FFCP PHASE2:Hg19::chr9:38059452..38059455,-#_6f559237635f45a587e54917aa4b5c95p@chr9:38059452..38059455, -
1.55e-98FFCP PHASE2:Hg19::chr20:42980646..42980651,+#_6f559237635f45a587e54917aa4b5c95p@chr20:42980646..42980651, +
1.55e-98FFCP PHASE2:Hg19::chr7:98807901..98807908,-#_6f559237635f45a587e54917aa4b5c95p@chr7:98807901..98807908, -
1.55e-98FFCP PHASE1:Hg19::chr20:42980646..42980651,+#_6f559237635f45a587e54917aa4b5c95p@chr20:42980646..42980651, +
1.55e-98FFCP PHASE1:Hg19::chr7:98807901..98807908,-#_6f559237635f45a587e54917aa4b5c95p@chr7:98807901..98807908, -
1.55e-98FFCP PHASE2:Hg19::chr10:114885416..114885423,+#_6f559237635f45a587e54917aa4b5c95p@chr10:114885416..114885423, +
1.55e-98FFCP PHASE1:Hg19::chr19:49545691..49545692,+#_6f559237635f45a587e54917aa4b5c95p@chr19:49545691..49545692, +
4.22e-98FFCP PHASE1:Hg19::chr10:101691118..101691135,-#_e8d27c0545f9198c73ab7c80a4c77f6dp6@DNMBP
4.22e-98FFCP PHASE2:Hg19::chr10:101691118..101691135,-#_e8d27c0545f9198c73ab7c80a4c77f6dp6@DNMBP
1.56e-79FFCP PHASE2:Hg19::chr10:114135850..114135859,+#_646e6bd465ce4fed57389bb9a3f97e83p21@ACSL5
1.56e-79FFCP PHASE1:Hg19::chr10:114135850..114135859,+#_646e6bd465ce4fed57389bb9a3f97e83p21@ACSL5
2.84e-66FFCP PHASE1:Hg19::chr9:117647523..117647530,+#_f26955b82b2531bbc262f89776d84896p@chr9:117647523..117647530, +
2.84e-66FFCP PHASE2:Hg19::chr9:117647523..117647530,+#_f26955b82b2531bbc262f89776d84896p@chr9:117647523..117647530, +
2.69e-57FFCP PHASE2:Hg19::chr10:114135865..114135874,+#_6a52d39038419f013168d76795a6d80bp16@ACSL5
2.69e-57FFCP PHASE1:Hg19::chr10:114135865..114135874,+#_6a52d39038419f013168d76795a6d80bp16@ACSL5
8.47e-57FFCP PHASE2:Hg19::chr3:195603779..195603786,+#_4ce93af558763f264428dbd3d8d5f032p@chr3:195603779..195603786, +
8.47e-57FFCP PHASE1:Hg19::chr3:195603779..195603786,+#_4ce93af558763f264428dbd3d8d5f032p@chr3:195603779..195603786, +
2.74e-50FFCP PHASE1:Hg19::chr13:99405077..99405084,-#_5aa09ccb26df86e6a20f1480fadc9657p5@SLC15A1
2.74e-50FFCP PHASE2:Hg19::chr13:99405077..99405084,-#_5aa09ccb26df86e6a20f1480fadc9657p5@SLC15A1
2.74e-50FFCP PHASE1:Hg19::chr12:78224442..78224455,+#_5aa09ccb26df86e6a20f1480fadc9657p26@NAV3
2.74e-50FFCP PHASE2:Hg19::chr12:78224442..78224455,+#_5aa09ccb26df86e6a20f1480fadc9657p26@NAV3
2.74e-50FFCP PHASE1:Hg19::chr19:49545646..49545652,+#_5aa09ccb26df86e6a20f1480fadc9657p@chr19:49545646..49545652, +
2.74e-50FFCP PHASE2:Hg19::chr19:49545646..49545652,+#_5aa09ccb26df86e6a20f1480fadc9657p@chr19:49545646..49545652, +
2.74e-50FFCP PHASE2:Hg19::chr11:119056147..119056152,+#_5aa09ccb26df86e6a20f1480fadc9657p3@PDZD3
2.74e-50FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_5aa09ccb26df86e6a20f1480fadc9657p@chr3:139035972..139036016, -
2.74e-50FFCP PHASE1:Hg19::chr11:119056147..119056152,+#_5aa09ccb26df86e6a20f1480fadc9657p3@PDZD3
2.74e-50FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_5aa09ccb26df86e6a20f1480fadc9657p@chr3:139035972..139036016, -
2.74e-50FFCP PHASE1:Hg19::chr4:93623257..93623261,+#_5aa09ccb26df86e6a20f1480fadc9657p@chr4:93623257..93623261, +
2.74e-50FFCP PHASE2:Hg19::chr4:93623257..93623261,+#_5aa09ccb26df86e6a20f1480fadc9657p@chr4:93623257..93623261, +
2.74e-50FFCP PHASE2:Hg19::chr7:98595103..98595105,-#_5aa09ccb26df86e6a20f1480fadc9657p@chr7:98595103..98595105, -
2.74e-50FFCP PHASE2:Hg19::chr10:4007246..4007251,+#_5aa09ccb26df86e6a20f1480fadc9657p@chr10:4007246..4007251, +
2.74e-50FFCP PHASE1:Hg19::chr7:98595103..98595105,-#_5aa09ccb26df86e6a20f1480fadc9657p@chr7:98595103..98595105, -
2.74e-50FFCP PHASE1:Hg19::chr10:4007246..4007251,+#_5aa09ccb26df86e6a20f1480fadc9657p@chr10:4007246..4007251, +
4.52e-50FFCP PHASE2:Hg19::chr20:61339609..61339610,+#_2a1ba24c35be61a4343ec8cb2ac70073p@chr20:61339609..61339610, +
4.52e-50FFCP PHASE2:Hg19::chr2:109605616..109605626,-#_2a1ba24c35be61a4343ec8cb2ac70073p5@EDAR
4.52e-50FFCP PHASE1:Hg19::chr20:61339609..61339610,+#_2a1ba24c35be61a4343ec8cb2ac70073p@chr20:61339609..61339610, +
4.52e-50FFCP PHASE2:Hg19::chr7:98870790..98870795,+#_2a1ba24c35be61a4343ec8cb2ac70073p7@MYH16
4.52e-50FFCP PHASE1:Hg19::chr16:88355328..88355348,+#_2a1ba24c35be61a4343ec8cb2ac70073p@chr16:88355328..88355348, +
4.52e-50FFCP PHASE2:Hg19::chr16:88355328..88355348,+#_2a1ba24c35be61a4343ec8cb2ac70073p@chr16:88355328..88355348, +
4.52e-50FFCP PHASE1:Hg19::chr7:98870790..98870795,+#_2a1ba24c35be61a4343ec8cb2ac70073p7@MYH16
4.52e-50FFCP PHASE1:Hg19::chr13:23368290..23368299,+#_2a1ba24c35be61a4343ec8cb2ac70073p@chr13:23368290..23368299, +
4.52e-50FFCP PHASE1:Hg19::chr7:150037547..150037552,-#_2a1ba24c35be61a4343ec8cb2ac70073p10@RARRES2
4.52e-50FFCP PHASE2:Hg19::chr13:23368290..23368299,+#_2a1ba24c35be61a4343ec8cb2ac70073p@chr13:23368290..23368299, +
4.52e-50FFCP PHASE2:Hg19::chr7:150037547..150037552,-#_2a1ba24c35be61a4343ec8cb2ac70073p10@RARRES2
4.52e-50FFCP PHASE1:Hg19::chr2:40184895..40184905,-#_2a1ba24c35be61a4343ec8cb2ac70073p@chr2:40184895..40184905, -
4.52e-50FFCP PHASE2:Hg19::chr2:40184895..40184905,-#_2a1ba24c35be61a4343ec8cb2ac70073p@chr2:40184895..40184905, -
4.52e-50FFCP PHASE1:Hg19::chr11:69867159..69867175,-#_2a1ba24c35be61a4343ec8cb2ac70073p3@ENST00000528507
4.52e-50FFCP PHASE2:Hg19::chr7:98870980..98870981,+#_2a1ba24c35be61a4343ec8cb2ac70073p8@MYH16
4.52e-50FFCP PHASE1:Hg19::chr22:30653778..30653783,-#_2a1ba24c35be61a4343ec8cb2ac70073p@chr22:30653778..30653783, -
4.52e-50FFCP PHASE2:Hg19::chr11:69867159..69867175,-#_2a1ba24c35be61a4343ec8cb2ac70073p3@ENST00000528507
4.52e-50FFCP PHASE2:Hg19::chr22:30653778..30653783,-#_2a1ba24c35be61a4343ec8cb2ac70073p@chr22:30653778..30653783, -
4.52e-50FFCP PHASE1:Hg19::chr7:98870980..98870981,+#_2a1ba24c35be61a4343ec8cb2ac70073p8@MYH16
4.52e-50FFCP PHASE1:Hg19::chr2:109605616..109605626,-#_2a1ba24c35be61a4343ec8cb2ac70073p5@EDAR
4.0e-45FFCP PHASE2:Hg19::chr3:195603547..195603555,-#_4aa7032e89e48e881a298060e7a16b8bp21@TNK2
4.0e-45FFCP PHASE1:Hg19::chr3:195603547..195603555,-#_4aa7032e89e48e881a298060e7a16b8bp21@TNK2
6.83e-37FFCP PHASE1:Hg19::chr7:102793355..102793366,+#_e71f823af56635fabf4bb82a313ebec3p@chr7:102793355..102793366, +
6.83e-37FFCP PHASE2:Hg19::chr7:102793355..102793366,+#_e71f823af56635fabf4bb82a313ebec3p@chr7:102793355..102793366, +
3.61e-34FFCP PHASE2:Hg19::chr16:86612092..86612099,+#_d3ce14c25f7b77f65ae7f4b521201e24p6@FOXL1
3.61e-34FFCP PHASE1:Hg19::chr16:86612092..86612099,+#_d3ce14c25f7b77f65ae7f4b521201e24p6@FOXL1
3.61e-34FFCP PHASE1:Hg19::chr21:40985187..40985202,-#_d3ce14c25f7b77f65ae7f4b521201e24p7@C21orf88
3.61e-34FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_d3ce14c25f7b77f65ae7f4b521201e24p@chr13:107026326..107026335, -
3.61e-34FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_d3ce14c25f7b77f65ae7f4b521201e24p@chr13:107026326..107026335, -
3.61e-34FFCP PHASE2:Hg19::chr21:40985187..40985202,-#_d3ce14c25f7b77f65ae7f4b521201e24p7@C21orf88
3.61e-34FFCP PHASE1:Hg19::chr19:51462404..51462413,-#_d3ce14c25f7b77f65ae7f4b521201e24p@chr19:51462404..51462413, -
3.61e-34FFCP PHASE2:Hg19::chr19:51462404..51462413,-#_d3ce14c25f7b77f65ae7f4b521201e24p@chr19:51462404..51462413, -
3.61e-34FFCP PHASE1:Hg19::chr6:1054763..1054800,-#_d3ce14c25f7b77f65ae7f4b521201e24p@chr6:1054763..1054800, -
3.61e-34FFCP PHASE2:Hg19::chr6:1054763..1054800,-#_d3ce14c25f7b77f65ae7f4b521201e24p@chr6:1054763..1054800, -
3.61e-34FFCP PHASE1:Hg19::chr4:143369478..143369483,-#_d3ce14c25f7b77f65ae7f4b521201e24p@chr4:143369478..143369483, -
3.61e-34FFCP PHASE1:Hg19::chr19:49545674..49545685,+#_d3ce14c25f7b77f65ae7f4b521201e24p@chr19:49545674..49545685, +
3.61e-34FFCP PHASE2:Hg19::chr4:143369478..143369483,-#_d3ce14c25f7b77f65ae7f4b521201e24p@chr4:143369478..143369483, -
3.61e-34FFCP PHASE2:Hg19::chr19:49545674..49545685,+#_d3ce14c25f7b77f65ae7f4b521201e24p@chr19:49545674..49545685, +
3.61e-34FFCP PHASE2:Hg19::chr3:138665669..138665685,-#_d3ce14c25f7b77f65ae7f4b521201e24p11@FOXL2
3.61e-34FFCP PHASE1:Hg19::chr3:138665669..138665685,-#_d3ce14c25f7b77f65ae7f4b521201e24p11@FOXL2
5.04e-34FFCP PHASE2:Hg19::chr7:45928178..45928184,+#_7f827e64679158de01932fc56108ee15p10@IGFBP1
5.04e-34FFCP PHASE2:Hg19::chr1:217891585..217891593,+#_7f827e64679158de01932fc56108ee15p@chr1:217891585..217891593, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=DOID:4929&oldid=3272379"