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|has_quality=
|has_quality=
|id=UBERON:0001905
|id=UBERON:0001905
|is_a=UBERON:0002757;;UBERON:0003296;;UBERON:0010134
|is_a=UBERON:0002757 ;;UBERON:0003296 ;;UBERON:0010134  
|is_obsolete=
|is_obsolete=
|located_in=
|located_in=
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|namespace=
|namespace=
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001899
|part_of=UBERON:0015238
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001941;;"spatially_disjoint_from" UBERON:0001942;;UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001941;;"spatially_disjoint_from" UBERON:0001942;;UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string

Revision as of 11:08, 12 September 2014

Name:pineal body
Definition:"The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_gland]
Xrefs:
links:

AAO:0010549
ABA:PIN
BM:P
BTO:0001067
EFO:0000865
EHDAA2:0001466
EHDAA:7523
EMAPA:18778
EV:0100131
EV:0100221
FMA:62033
GAID:453
galen:PinealGland
[1]
[2]
MA:0000175
MAT:0000448
MESH:A.06.407.635
ncithesaurus:Pineal_Gland
NIF_GrossAnatomy:birnlex_1184
NIF_GrossAnatomy:nlx_anat_1010009
OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
SCTID:181126002
TAO:0000019
VHOG:0000051
XAO:0000160

ZFA:0000019
Synonyms: "corpus pineale" EXACT []
"epiphysis" RELATED [ZFA:0000019]
"epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri]
"glandula pinealis" EXACT [FMA:TA]
"glandula pinealis" EXACT [FMA:62033, FMA:TA]
"pineal gland" EXACT [FMA:62033]
"pineal organ" EXACT [ZFA:0000019]
Comments:AO notes: part of midbrain in HOG, but this is inconsistent with ABA.
Alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002757(regional part of epithalamus),UBERON:0003296(gland of diencephalon),UBERON:0010134(secretory circumventricular organ)
part_of:UBERON:0015238(pineal complex)



Children

derives from:FF:0010160 (human pineal gland - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001905 (pineal body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr8:87755821..87755822,-#_842633804e145228aa5bd41c0ffb3985p10@CNGB3
3.29e-195FFCP PHASE1:Hg19::chr5:7338484..7338504,-#_842633804e145228aa5bd41c0ffb3985p@chr5:7338484..7338504, -
3.29e-195FFCP PHASE2:Hg19::chr14:57197193..57197194,-#_842633804e145228aa5bd41c0ffb3985p1@ENST00000554597
3.29e-195FFCP PHASE1:Hg19::chr1:45782019..45782028,+#_842633804e145228aa5bd41c0ffb3985p@chr1:45782019..45782028, +
3.29e-195FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066392..18066397, -
3.29e-195FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18041244..18041266, -
3.29e-195FFCP PHASE1:Hg19::chr1:240177602..240177607,+#_842633804e145228aa5bd41c0ffb3985p17@FMN2
3.29e-195FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_842633804e145228aa5bd41c0ffb3985p@chr11:72297717..72297725, -
3.29e-195FFCP PHASE2:Hg19::chr8:135520309..135520324,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135520309..135520324, -
3.29e-195FFCP PHASE1:Hg19::chr14:55282406..55282415,-#_842633804e145228aa5bd41c0ffb3985p@chr14:55282406..55282415, -
3.29e-195FFCP PHASE1:Hg19::chr7:9228468..9228494,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9228468..9228494, -
3.29e-195FFCP PHASE1:Hg19::chr5:134871183..134871197,-#_842633804e145228aa5bd41c0ffb3985p3@NEUROG1
3.29e-195FFCP PHASE1:Hg19::chr16:51174216..51174239,-#_842633804e145228aa5bd41c0ffb3985p@chr16:51174216..51174239, -
3.29e-195FFCP PHASE2:Hg19::chr3:54952432..54952459,-#_842633804e145228aa5bd41c0ffb3985p@chr3:54952432..54952459, -
3.29e-195FFCP PHASE2:Hg19::chr8:135472861..135472868,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135472861..135472868, -
3.29e-195FFCP PHASE2:Hg19::chr18:56963093..56963105,-#_842633804e145228aa5bd41c0ffb3985p@chr18:56963093..56963105, -
3.29e-195FFCP PHASE1:Hg19::chr3:192894646..192894653,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000414895
3.29e-195FFCP PHASE1:Hg19::chr6:158734173..158734183,+#_842633804e145228aa5bd41c0ffb3985p7@TULP4
3.29e-195FFCP PHASE1:Hg19::chr5:119867229..119867240,+#_842633804e145228aa5bd41c0ffb3985p9@PRR16
3.29e-195FFCP PHASE2:Hg19::chr16:51175701..51175708,-#_842633804e145228aa5bd41c0ffb3985p@chr16:51175701..51175708, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473748..135473753,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473748..135473753, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066345..18066365,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066345..18066365, -
3.29e-195FFCP PHASE2:Hg19::chr12:15134610..15134617,+#_842633804e145228aa5bd41c0ffb3985p@chr12:15134610..15134617, +
3.29e-195FFCP PHASE2:Hg19::chr5:135732675..135732680,-#_842633804e145228aa5bd41c0ffb3985p3@ENST00000514282
3.29e-195FFCP PHASE2:Hg19::chr11:18040537..18040547,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18040537..18040547, -
3.29e-195FFCP PHASE2:Hg19::chr2:48705144..48705150,+#_842633804e145228aa5bd41c0ffb3985p@chr2:48705144..48705150, +
3.29e-195FFCP PHASE1:Hg19::chr18:56962131..56962138,-#_842633804e145228aa5bd41c0ffb3985p@chr18:56962131..56962138, -
3.29e-195FFCP PHASE1:Hg19::chr9:92310419..92310432,+#_842633804e145228aa5bd41c0ffb3985p@chr9:92310419..92310432, +
3.29e-195FFCP PHASE1:Hg19::chr15:47662877..47662880,-#_842633804e145228aa5bd41c0ffb3985p@chr15:47662877..47662880, -
3.29e-195FFCP PHASE1:Hg19::chr4:1188439..1188454,-#_842633804e145228aa5bd41c0ffb3985p@chr4:1188439..1188454, -
3.29e-195FFCP PHASE2:Hg19::chr2:17065916..17065929,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17065916..17065929, +
3.29e-195FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_842633804e145228aa5bd41c0ffb3985p22@TUBA1C
3.29e-195FFCP PHASE1:Hg19::chr11:18067904..18067908,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18067904..18067908, -
3.29e-195FFCP PHASE1:Hg19::chr1:57914399..57914402,+#_842633804e145228aa5bd41c0ffb3985p@chr1:57914399..57914402, +
3.29e-195FFCP PHASE1:Hg19::chr7:9194488..9194491,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9194488..9194491, -
3.29e-195FFCP PHASE2:Hg19::chr8:116085391..116085419,+#_842633804e145228aa5bd41c0ffb3985p@chr8:116085391..116085419, +
3.29e-195FFCP PHASE1:Hg19::chr15:55470984..55471009,-#_842633804e145228aa5bd41c0ffb3985p@chr15:55470984..55471009, -
3.29e-195FFCP PHASE1:Hg19::chr13:68306577..68306607,+#_842633804e145228aa5bd41c0ffb3985p@chr13:68306577..68306607, +
3.29e-195FFCP PHASE2:Hg19::chr7:9178561..9178568,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9178561..9178568, -
3.29e-195FFCP PHASE2:Hg19::chrX:146290937..146290942,+#_842633804e145228aa5bd41c0ffb3985p@chrX:146290937..146290942, +
3.29e-195FFCP PHASE1:Hg19::chr7:32468385..32468392,-#_842633804e145228aa5bd41c0ffb3985p@chr7:32468385..32468392, -
3.29e-195FFCP PHASE2:Hg19::chr5:7338484..7338504,-#_842633804e145228aa5bd41c0ffb3985p@chr5:7338484..7338504, -
3.29e-195FFCP PHASE1:Hg19::chr3:54952420..54952425,-#_842633804e145228aa5bd41c0ffb3985p@chr3:54952420..54952425, -
3.29e-195FFCP PHASE2:Hg19::chr5:119799539..119799543,+#_842633804e145228aa5bd41c0ffb3985p13@PRR16
3.29e-195FFCP PHASE1:Hg19::chr8:99033417..99033423,+#_842633804e145228aa5bd41c0ffb3985p17@MATN2
3.29e-195FFCP PHASE2:Hg19::chr1:45782019..45782028,+#_842633804e145228aa5bd41c0ffb3985p@chr1:45782019..45782028, +
3.29e-195FFCP PHASE2:Hg19::chr1:240177602..240177607,+#_842633804e145228aa5bd41c0ffb3985p17@FMN2
3.29e-195FFCP PHASE2:Hg19::chr2:216447404..216447411,-#_842633804e145228aa5bd41c0ffb3985p1@ENST00000457625
3.29e-195FFCP PHASE2:Hg19::chr7:9228468..9228494,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9228468..9228494, -
3.29e-195FFCP PHASE2:Hg19::chr11:84530787..84530803,+#_842633804e145228aa5bd41c0ffb3985p@chr11:84530787..84530803, +
3.29e-195FFCP PHASE2:Hg19::chr2:108602341..108602352,+#_842633804e145228aa5bd41c0ffb3985p@chr2:108602341..108602352, +
3.29e-195FFCP PHASE2:Hg19::chr8:135473205..135473218,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473205..135473218, -
3.29e-195FFCP PHASE2:Hg19::chr6:158734173..158734183,+#_842633804e145228aa5bd41c0ffb3985p7@TULP4
3.29e-195FFCP PHASE1:Hg19::chr2:17064630..17064651,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17064630..17064651, +
3.29e-195FFCP PHASE2:Hg19::chr11:74951707..74951719,+#_842633804e145228aa5bd41c0ffb3985p9@LOC100507050
3.29e-195FFCP PHASE2:Hg19::chr8:135515939..135515941,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135515939..135515941, +
3.29e-195FFCP PHASE2:Hg19::chr7:9194488..9194491,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9194488..9194491, -
3.29e-195FFCP PHASE2:Hg19::chr5:136328601..136328607,-#_842633804e145228aa5bd41c0ffb3985p25@SPOCK1
3.29e-195FFCP PHASE2:Hg19::chr17:74463608..74463612,+#_842633804e145228aa5bd41c0ffb3985p5@AANAT
3.29e-195FFCP PHASE2:Hg19::chr11:18041244..18041266,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18041244..18041266, -
3.29e-195FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_842633804e145228aa5bd41c0ffb3985p@chr12:55422858..55422866, +
3.29e-195FFCP PHASE1:Hg19::chr2:108616342..108616384,+#_842633804e145228aa5bd41c0ffb3985p@chr2:108616342..108616384, +
3.29e-195FFCP PHASE2:Hg19::chr8:135474173..135474185,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135474173..135474185, -
3.29e-195FFCP PHASE1:Hg19::chr13:52650541..52650548,-#_842633804e145228aa5bd41c0ffb3985p@chr13:52650541..52650548, -
3.29e-195FFCP PHASE2:Hg19::chr16:18036005..18036011,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18036005..18036011, -
3.29e-195FFCP PHASE2:Hg19::chr1:57914399..57914402,+#_842633804e145228aa5bd41c0ffb3985p@chr1:57914399..57914402, +
3.29e-195FFCP PHASE1:Hg19::chr8:135504405..135504410,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135504405..135504410, -
3.29e-195FFCP PHASE1:Hg19::chr17:74463567..74463574,+#_842633804e145228aa5bd41c0ffb3985p4@AANAT
3.29e-195FFCP PHASE2:Hg19::chr7:32468385..32468392,-#_842633804e145228aa5bd41c0ffb3985p@chr7:32468385..32468392, -
3.29e-195FFCP PHASE1:Hg19::chr10:80984180..80984190,-#_842633804e145228aa5bd41c0ffb3985p@chr10:80984180..80984190, -
3.29e-195FFCP PHASE2:Hg19::chr12:121088132..121088135,+#_842633804e145228aa5bd41c0ffb3985p15@CABP1
3.29e-195FFCP PHASE2:Hg19::chr16:50898098..50898107,-#_842633804e145228aa5bd41c0ffb3985p@chr16:50898098..50898107, -
3.29e-195FFCP PHASE1:Hg19::chr11:18053180..18053192,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18053180..18053192, -
3.29e-195FFCP PHASE1:Hg19::chr13:56628524..56628547,-#_842633804e145228aa5bd41c0ffb3985p@chr13:56628524..56628547, -
3.29e-195FFCP PHASE1:Hg19::chr12:55422293..55422300,+#_842633804e145228aa5bd41c0ffb3985p@chr12:55422293..55422300, +
3.29e-195FFCP PHASE1:Hg19::chr8:87755845..87755852,-#_842633804e145228aa5bd41c0ffb3985p6@CNGB3
3.29e-195FFCP PHASE1:Hg19::chr17:55484129..55484139,+#_842633804e145228aa5bd41c0ffb3985p@chr17:55484129..55484139, +
3.29e-195FFCP PHASE1:Hg19::chr3:128170725..128170735,+#_842633804e145228aa5bd41c0ffb3985p@chr3:128170725..128170735, +
3.29e-195FFCP PHASE2:Hg19::chr11:18067904..18067908,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18067904..18067908, -
3.29e-195FFCP PHASE1:Hg19::chr16:18066399..18066411,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066399..18066411, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473472..135473477,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473472..135473477, -
3.29e-195FFCP PHASE2:Hg19::chr1:204620238..204620253,+#_842633804e145228aa5bd41c0ffb3985p@chr1:204620238..204620253, +
3.29e-195FFCP PHASE1:Hg19::chr1:99798419..99798422,-#_842633804e145228aa5bd41c0ffb3985p@chr1:99798419..99798422, -
3.29e-195FFCP PHASE1:Hg19::chr13:21399081..21399087,+#_842633804e145228aa5bd41c0ffb3985p@chr13:21399081..21399087, +
3.29e-195FFCP PHASE2:Hg19::chr12:6956383..6956390,+#_842633804e145228aa5bd41c0ffb3985p@chr12:6956383..6956390, +
3.29e-195FFCP PHASE1:Hg19::chr12:81859007..81859036,+#_842633804e145228aa5bd41c0ffb3985p@chr12:81859007..81859036, +
3.29e-195FFCP PHASE1:Hg19::chr5:136699666..136699696,-#_842633804e145228aa5bd41c0ffb3985p@chr5:136699666..136699696, -
3.29e-195FFCP PHASE1:Hg19::chr2:44903714..44903719,+#_842633804e145228aa5bd41c0ffb3985p8@CAMKMT
3.29e-195FFCP PHASE2:Hg19::chr3:54952462..54952471,-#_842633804e145228aa5bd41c0ffb3985p@chr3:54952462..54952471, -
3.29e-195FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_842633804e145228aa5bd41c0ffb3985p@chr16:17930871..17930877, -
3.29e-195FFCP PHASE2:Hg19::chr18:56963107..56963117,-#_842633804e145228aa5bd41c0ffb3985p@chr18:56963107..56963117, -
3.29e-195FFCP PHASE1:Hg19::chr3:192894664..192894677,-#_842633804e145228aa5bd41c0ffb3985p1@ENST00000414895
3.29e-195FFCP PHASE1:Hg19::chr5:119868809..119868839,+#_842633804e145228aa5bd41c0ffb3985p@chr5:119868809..119868839, +
3.29e-195FFCP PHASE2:Hg19::chr2:17185712..17185735,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17185712..17185735, +
3.29e-195FFCP PHASE1:Hg19::chr9:25264978..25265001,+#_842633804e145228aa5bd41c0ffb3985p@chr9:25264978..25265001, +
3.29e-195FFCP PHASE2:Hg19::chr8:135504314..135504320,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135504314..135504320, -
3.29e-195FFCP PHASE2:Hg19::chr5:135732714..135732721,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000514282
3.29e-195FFCP PHASE2:Hg19::chr3:100942376..100942381,-#_842633804e145228aa5bd41c0ffb3985p@chr3:100942376..100942381, -
3.29e-195FFCP PHASE1:Hg19::chr8:135520309..135520324,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135520309..135520324, -
3.29e-195FFCP PHASE1:Hg19::chr18:56963093..56963105,-#_842633804e145228aa5bd41c0ffb3985p@chr18:56963093..56963105, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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