UBERON:0002066: Difference between revisions

Revision as of 11:10, 12 September 2014

umbilical vein

Definition:

"The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein]

Xrefs:

Expandlinks:

Synonyms:

"vena umbilicalis" RELATED LATIN [Wikipedia:Umbilical_vein]

Alt_id:

UBERON:FMA_70317-MA_0002249

Subset:

uberon_slim

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0001638(vein),UBERON:0010260(umbilical blood vessel)

Children

part of:	FF:0000177 (human smooth muscle cell of umbilical vein sample),CL:0002588 (smooth muscle cell of the umbilical vein),CL:0002618 (endothelial cell of umbilical vein)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
11324-117E1 (Endothelial Cells - Umbilical vein, donor2)
11400-118D5 (Endothelial Cells - Umbilical vein, donor3)
11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002066 (umbilical vein), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
3.49e-79	FFCP PHASE2:Hg19::chr1:78512168..78512171,-	p@chr1:78512168..78512171, -
3.49e-79	FFCP PHASE1:Hg19::chr1:78512168..78512171,-	p@chr1:78512168..78512171, -
6.03e-60	FFCP PHASE2:Hg19::chr10:94590950..94590955,+	p13@EXOC6
6.03e-60	FFCP PHASE1:Hg19::chr1:78510648..78510661,+	p7@GIPC2
6.03e-60	FFCP PHASE2:Hg19::chr1:78510648..78510661,+	p7@GIPC2
6.03e-60	FFCP PHASE1:Hg19::chr10:94590950..94590955,+	p13@EXOC6
2.01e-59	FFCP PHASE1:Hg19::chr12:105962745..105962748,+	p@chr12:105962745..105962748, +
2.01e-59	FFCP PHASE2:Hg19::chr12:105962745..105962748,+	p@chr12:105962745..105962748, +
2.73e-51	FFCP PHASE2:Hg19::chr1:78511901..78511912,+	p6@GIPC2
2.73e-51	FFCP PHASE1:Hg19::chr1:78511901..78511912,+	p6@GIPC2
6.45e-51	FFCP PHASE2:Hg19::chr11:59875891..59875903,-	p@chr11:59875891..59875903, -
6.45e-51	FFCP PHASE1:Hg19::chr11:59875891..59875903,-	p@chr11:59875891..59875903, -
1.89e-45	FFCP PHASE1:Hg19::chr18:53146977..53146999,-	p@chr18:53146977..53146999, -
1.89e-45	FFCP PHASE2:Hg19::chr18:53146977..53146999,-	p@chr18:53146977..53146999, -
4.69e-45	FFCP PHASE1:Hg19::chr10:94590997..94591006,+	p11@EXOC6
4.69e-45	FFCP PHASE2:Hg19::chr10:94590997..94591006,+	p11@EXOC6
6.33e-45	FFCP PHASE2:Hg19::chr12:105863737..105863745,+	p@chr12:105863737..105863745, +
6.33e-45	FFCP PHASE1:Hg19::chr12:105863737..105863745,+	p@chr12:105863737..105863745, +
1.48e-40	FFCP PHASE2:Hg19::chr17:54543635..54543636,+	p@chr17:54543635..54543636, +
1.48e-40	FFCP PHASE1:Hg19::chr17:54543635..54543636,+	p@chr17:54543635..54543636, +
1.48e-40	FFCP PHASE2:Hg19::chr17:54543642..54543647,+	p@chr17:54543642..54543647, +
1.48e-40	FFCP PHASE1:Hg19::chr17:54543642..54543647,+	p@chr17:54543642..54543647, +
1.81e-40	FFCP PHASE2:Hg19::chr16:82788994..82789018,+	p@chr16:82788994..82789018, +
1.81e-40	FFCP PHASE1:Hg19::chr16:82788994..82789018,+	p@chr16:82788994..82789018, +
1.81e-40	FFCP PHASE1:Hg19::chr12:105889929..105889933,+	p@chr12:105889929..105889933, +
1.81e-40	FFCP PHASE2:Hg19::chr12:105889929..105889933,+	p@chr12:105889929..105889933, +
2.55e-40	FFCP PHASE1:Hg19::chr5:63803524..63803561,+	p15@RGS7BP
2.55e-40	FFCP PHASE2:Hg19::chr5:63803524..63803561,+	p15@RGS7BP
6.5e-40	FFCP PHASE1:Hg19::chr21:27284505..27284518,-	p@chr21:27284505..27284518, -
6.5e-40	FFCP PHASE2:Hg19::chr21:27284505..27284518,-	p@chr21:27284505..27284518, -
1.39e-36	FFCP PHASE1:Hg19::chr1:172926077..172926120,-	p@chr1:172926077..172926120, -
1.39e-36	FFCP PHASE2:Hg19::chr1:172926077..172926120,-	p@chr1:172926077..172926120, -
1.78e-36	FFCP PHASE1:Hg19::chr19:7861475..7861491,+	p@chr19:7861475..7861491, +
1.78e-36	FFCP PHASE2:Hg19::chr19:7861475..7861491,+	p@chr19:7861475..7861491, +
1.79e-33	FFCP PHASE1:Hg19::chr10:59999608..59999621,-	p@chr10:59999608..59999621, -
1.79e-33	FFCP PHASE2:Hg19::chr10:59999608..59999621,-	p@chr10:59999608..59999621, -
5.98e-33	FFCP PHASE1:Hg19::chr1:186946611..186946622,+	p@chr1:186946611..186946622, +
5.98e-33	FFCP PHASE2:Hg19::chr1:186946611..186946622,+	p@chr1:186946611..186946622, +
1.56e-30	FFCP PHASE1:Hg19::chr12:105863627..105863633,+	p@chr12:105863627..105863633, +
1.56e-30	FFCP PHASE2:Hg19::chr12:105863627..105863633,+	p@chr12:105863627..105863633, +
2.53e-28	FFCP PHASE1:Hg19::chr6:142622846..142622853,+	p12@GPR126
2.53e-28	FFCP PHASE2:Hg19::chr6:142622846..142622853,+	p12@GPR126
4.32e-28	FFCP PHASE1:Hg19::chr13:75941109..75941132,-	p@chr13:75941109..75941132, -
4.32e-28	FFCP PHASE2:Hg19::chr13:75941109..75941132,-	p@chr13:75941109..75941132, -
4.41e-28	FFCP PHASE1:Hg19::chr6:136359549..136359565,+	p2@AB384352
4.41e-28	FFCP PHASE2:Hg19::chr6:136359549..136359565,+	p2@AB384352
2.72e-27	FFCP PHASE2:Hg19::chr2:72789511..72789554,-	p@chr2:72789511..72789554, -
2.72e-27	FFCP PHASE1:Hg19::chr2:72789511..72789554,-	p@chr2:72789511..72789554, -
3.11e-27	FFCP PHASE1:Hg19::chr15:22545370..22545372,+	p@chr15:22545370..22545372, +
3.11e-27	FFCP PHASE2:Hg19::chr15:22545370..22545372,+	p@chr15:22545370..22545372, +
4.63e-27	FFCP PHASE1:Hg19::chr11:59876093..59876098,-	p@chr11:59876093..59876098, -
4.63e-27	FFCP PHASE2:Hg19::chr11:59876093..59876098,-	p@chr11:59876093..59876098, -
1.3e-24	FFCP PHASE2:Hg19::chr9:35754222..35754237,-	p3@MSMP
1.3e-24	FFCP PHASE1:Hg19::chr9:35754222..35754237,-	p3@MSMP
1.02e-23	FFCP PHASE1:Hg19::chr10:94607612..94607616,+	p@chr10:94607612..94607616, +
1.02e-23	FFCP PHASE2:Hg19::chr10:94607612..94607616,+	p@chr10:94607612..94607616, +
1.14e-23	FFCP PHASE1:Hg19::chr1:186946659..186946664,+	p@chr1:186946659..186946664, +
1.14e-23	FFCP PHASE2:Hg19::chr1:186946659..186946664,+	p@chr1:186946659..186946664, +
1.28e-23	FFCP PHASE2:Hg19::chr3:154801312..154801336,+	p29@MME
1.28e-23	FFCP PHASE1:Hg19::chr3:154801312..154801336,+	p29@MME
1.81e-23	FFCP PHASE2:Hg19::chr9:14231115..14231119,-	p@chr9:14231115..14231119, -
1.81e-23	FFCP PHASE1:Hg19::chr9:14231115..14231119,-	p@chr9:14231115..14231119, -
1.24e-22	FFCP PHASE2:Hg19::chr9:139563124..139563129,+	p@chr9:139563124..139563129, +
1.24e-22	FFCP PHASE1:Hg19::chr9:139563124..139563129,+	p@chr9:139563124..139563129, +
3.33e-22	FFCP PHASE1:Hg19::chr10:94590895..94590905,+	p8@EXOC6
3.33e-22	FFCP PHASE2:Hg19::chr10:94590895..94590905,+	p8@EXOC6
4.76e-22	FFCP PHASE1:Hg19::chr10:50153703..50153720,+	p7@WDFY4
4.76e-22	FFCP PHASE2:Hg19::chr10:50153703..50153720,+	p7@WDFY4
4.21e-21	FFCP PHASE1:Hg19::chr16:4181309..4181310,-	p@chr16:4181309..4181310, -
4.21e-21	FFCP PHASE2:Hg19::chr4:86684588..86684603,-	p@chr4:86684588..86684603, -
4.21e-21	FFCP PHASE2:Hg19::chr16:4181309..4181310,-	p@chr16:4181309..4181310, -
4.21e-21	FFCP PHASE1:Hg19::chr4:86684588..86684603,-	p@chr4:86684588..86684603, -
5.15e-21	FFCP PHASE2:Hg19::chr2:56216738..56216739,-	p@chr2:56216738..56216739, -
5.15e-21	FFCP PHASE1:Hg19::chr2:56216738..56216739,-	p@chr2:56216738..56216739, -
5.15e-21	FFCP PHASE1:Hg19::chr19:7861495..7861500,+	p@chr19:7861495..7861500, +
5.15e-21	FFCP PHASE2:Hg19::chr19:7861495..7861500,+	p@chr19:7861495..7861500, +
7.89e-20	FFCP PHASE2:Hg19::chr12:96841308..96841312,+	p@chr12:96841308..96841312, +
7.89e-20	FFCP PHASE1:Hg19::chr12:96841308..96841312,+	p@chr12:96841308..96841312, +
4.08e-19	FFCP PHASE2:Hg19::chr21:39869867..39869880,-	p@chr21:39869867..39869880, -
4.08e-19	FFCP PHASE1:Hg19::chr21:39869867..39869880,-	p@chr21:39869867..39869880, -
4.68e-19	FFCP PHASE1:Hg19::chr12:105863705..105863718,+	p@chr12:105863705..105863718, +
4.68e-19	FFCP PHASE2:Hg19::chr12:105863705..105863718,+	p@chr12:105863705..105863718, +
9.47e-19	FFCP PHASE2:Hg19::chr5:21824001..21824014,+	p@chr5:21824001..21824014, +
9.47e-19	FFCP PHASE1:Hg19::chr5:21824001..21824014,+	p@chr5:21824001..21824014, +
1.03e-18	FFCP PHASE2:Hg19::chr10:50153735..50153750,+	p6@WDFY4
1.03e-18	FFCP PHASE1:Hg19::chr10:50153735..50153750,+	p6@WDFY4
1.09e-18	FFCP PHASE1:Hg19::chr12:10794718..10794741,+	p@chr12:10794718..10794741, +
1.09e-18	FFCP PHASE2:Hg19::chr12:10794718..10794741,+	p@chr12:10794718..10794741, +
1.22e-18	FFCP PHASE1:Hg19::chr6:78171746..78171769,+	p@chr6:78171746..78171769, +
1.22e-18	FFCP PHASE2:Hg19::chr6:78171746..78171769,+	p@chr6:78171746..78171769, +
1.35e-18	FFCP PHASE2:Hg19::chr2:197226784..197226793,-	p21@HECW2
1.35e-18	FFCP PHASE1:Hg19::chr2:197226784..197226793,-	p21@HECW2
1.62e-18	FFCP PHASE2:Hg19::chr3:169078072..169078076,-	p@chr3:169078072..169078076, -
1.62e-18	FFCP PHASE1:Hg19::chr3:169078072..169078076,-	p@chr3:169078072..169078076, -
1.66e-18	FFCP PHASE2:Hg19::chr1:61415107..61415136,-	p@chr1:61415107..61415136, -
1.66e-18	FFCP PHASE1:Hg19::chr1:61415107..61415136,-	p@chr1:61415107..61415136, -
1.77e-18	FFCP PHASE2:Hg19::chr2:18479033..18479051,+	p@chr2:18479033..18479051, +
1.77e-18	FFCP PHASE1:Hg19::chr2:18479033..18479051,+	p@chr2:18479033..18479051, +
1.97e-18	FFCP PHASE1:Hg19::chr10:94591023..94591034,+	p7@EXOC6
1.97e-18	FFCP PHASE2:Hg19::chr10:94591023..94591034,+	p7@EXOC6

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{UBERON
-|id=UBERON:0002066
+|alt_id=UBERON:FMA_70317-MA_0002249
-|name=umbilical vein
-|namespace=
-|def="The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein]
-|xref=BTO:0001509;;EFO:0001940;;EHDAA:1034;;EHDAA:488;;EMAPA:16243;;EMAPA:16375;;EV:0100392;;FMA:70317;;GAID:542;;http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png;;MA:0002249;;MESH:A.07.231.908.670.874;;ncithesaurus:Umbilical_Vein;;OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g;;RETIRED_EHDAA2:0002107;;SCTID:367567000;;VHOG:0000015
-|is_a=UBERON:0001638;;UBERON:0010260
-|synonym="vena umbilicalis" RELATED LATIN [Wikipedia:Umbilical_vein]
 |comment=
-|alt_id=UBERON:FMA_70317-MA_0002249
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def="The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein]
-|subset=uberon_slim
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=UBERON:0002066
+|is_a=UBERON:0001638 ;;UBERON:0010260
+|is_obsolete=
 |located_in=
+|name=umbilical vein
+|namespace=
+|obo_creation_date=
 |part_of=
+|preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
-|is_obsolete=
+|subset=uberon_slim
-|preceded_by=
+|synonym="vena umbilicalis" RELATED LATIN [Wikipedia:Umbilical_vein]
+|union_of=
+|xref=BTO:0001509;;EFO:0001940;;EHDAA:1034;;EHDAA:488;;EMAPA:16243;;EMAPA:16375;;EV:0100392;;FMA:70317;;GAID:542;;http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png;;MA:0002249;;MESH:A.07.231.908.670.874;;ncithesaurus:Umbilical_Vein;;OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g;;RETIRED_EHDAA2:0002107;;SCTID:367567000;;VHOG:0000015
 }}

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Revision as of 11:10, 12 September 2014

Ontology Tree: Loaded from BioPortal

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