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{{CL
{{CL
|id=CL:0000039
|alt_id=
|name=germ line cell
|namespace=cell
|def="A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544]
|xref=
|is_a=CL:0000548
|synonym=
|comment=Originally this term had some plant germ line cell children.
|comment=Originally this term had some plant germ line cell children.
|alt_id=
|disjoint_from=CL:0002371
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=CL:0002371
|has_quality=
|has_quality=
|id=CL:0000039
|is_a=CL:0000548
|is_obsolete=
|located_in=
|located_in=
|name=germ line cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:28, 12 September 2014

Name:germ line cell
Namespace:FANTOM
Definition:"A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544]
Comments:Originally this term had some plant germ line cell children.


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000548(animal cell)
disjoint_from:CL:0002371(somatic cell)



Children


is a:CL:0000586 (germ cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000039 (germ line cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data