CL:0000055: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
|alt_id= | |alt_id= | ||
| | |comment=define using PATO mulit-potent or oligopotent? | ||
|created_by= | |created_by= | ||
| | |def="A precursor cell with a limited number of potential fates." [SANBI:mhl] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000055 | |||
|is_a=CL:0000003 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=non-terminally differentiated cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |||
|subset= | |||
|synonym="blast cell" EXACT [] | |||
|union_of= | |||
|xref=BTO:0000125;;FMA:84782 | |||
}} | }} | ||
Latest revision as of 16:28, 12 September 2014
| Name: | non-terminally differentiated cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A precursor cell with a limited number of potential fates." [SANBI:mhl] | ||
| Xrefs: |
| ||
| Synonyms: | "blast cell" EXACT [] | ||
| Comments: | define using PATO mulit-potent or oligopotent? |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000003(native cell) |
|---|
Children
| is a: | CL:0000030 (glioblast),CL:0000031 (neuroblast),CL:0000058 (chondroblast),CL:0000062 (osteoblast),CL:0000541 (melanoblast),CL:0000680 (muscle precursor cell),CL:0007009 (prechondroblast),CL:0007010 (preosteoblast) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10445-106F4
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10586-108D1
- 10621-108G9
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11241-116D8 (Myoblast, donor1)
- 11276-116H7 (Osteoblast - differentiated, donor1)
... further results Mouse (Mus musculus)
- 10445-106F4
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10586-108D1
- 10621-108G9
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11241-116D8 (Myoblast, donor1)
- 11276-116H7 (Osteoblast - differentiated, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000055 (non-terminally differentiated cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
