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CL:0000147: Difference between revisions

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|located_in=
|located_in=
|name=pigment cell
|name=pigment cell
|namespace=cell
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:30, 12 September 2014

Name:pigment cell
Namespace:FANTOM
Definition:"A pigment cell is a cell that contains pigment granules." [GOC:tfm]
Synonyms: "chromatocyte" EXACT []
"chromatophore" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000325(stuff accumulating cell)



Children


is a:CL:0000148 (melanocyte),CL:0000149 (visual pigment cell),CL:0000342 (pigment cell (sensu Vertebrata))

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000147 (pigment cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data