CL:0000147: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000147
|name=pigment cell
|namespace=cell
|def="A pigment cell is a cell that contains pigment granules." [GOC:tfm]
|xref=
|is_a=CL:0000325
|synonym="chrom...") |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A pigment cell is a cell that contains pigment granules." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000147 | |||
|is_a=CL:0000325 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=pigment cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym="chromatocyte" EXACT [];;"chromatophore" EXACT [] | |||
|union_of= | |||
|xref= | |||
}} | }} |
Latest revision as of 16:30, 12 September 2014
Name: | pigment cell |
---|---|
Namespace: | FANTOM |
Definition: | "A pigment cell is a cell that contains pigment granules." [GOC:tfm] |
Synonyms: |
"chromatocyte" EXACT [] "chromatophore" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000325(stuff accumulating cell) |
---|
Children
is a: | CL:0000148 (melanocyte),CL:0000149 (visual pigment cell),CL:0000342 (pigment cell (sensu Vertebrata)) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11274-116H5 (Melanocyte - light, donor1)
- 11351-117H1 (Melanocyte - light, donor2)
- 11423-118G1 (Melanocyte - light, donor3)
- 11502-119F8 (Melanocyte - dark, donor1)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11581-120F6
- 11582-120F7 (Melanocyte - dark, donor2)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
... further results Mouse (Mus musculus)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11274-116H5 (Melanocyte - light, donor1)
- 11351-117H1 (Melanocyte - light, donor2)
- 11423-118G1 (Melanocyte - light, donor3)
- 11502-119F8 (Melanocyte - dark, donor1)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11581-120F6
- 11582-120F7 (Melanocyte - dark, donor2)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000147 (pigment cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data