CL:0000192: Difference between revisions
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|id=CL:0000192
|name=smooth muscle cell
|namespace=cell
|def="A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vesse...") |
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{{CL | {{CL | ||
| | |alt_id=CL:0000191 | ||
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| | |def="A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361] | ||
|derives_from= | |derives_from= | ||
|develops_from=CL:0000514 | |develops_from=CL:0000514 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000192 | |||
|is_a=CL:0008000 ;;CL:0008007 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=smooth muscle cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |||
|subset= | |||
|synonym="myocytes, smooth muscle" EXACT [MESH:D032389];;"non-striated muscle cell" EXACT [];;"SMCs" EXACT [PMID:9315361];;"smooth muscle fiber" EXACT [] | |||
|union_of= | |||
|xref=BTO:0004576;;FMA:14072 | |||
}} | }} |
Latest revision as of 16:31, 12 September 2014
Name: | smooth muscle cell | |
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Namespace: | FANTOM | |
Definition: | "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361] | |
Xrefs: |
| |
Synonyms: |
"myocytes, smooth muscle" EXACT [MESH:D032389] "non-striated muscle cell" EXACT [] "SMCs" EXACT [PMID:9315361] "smooth muscle fiber" EXACT [] | |
Alt_id: | CL:0000191 |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0008000(non-striated muscle cell),CL:0008007(visceral muscle cell) |
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develops_from: | CL:0000514(smooth muscle myoblast) |
Children
is a: | CL:0000359 (vascular associated smooth muscle cell),CL:0002504 (enteric smooth muscle cell),CL:0002597 (smooth muscle cell of bladder),CL:0002598 (bronchial smooth muscle cell),CL:0002599 (smooth muscle cell of the esophagus),CL:0002600 (smooth muscle cell of trachea),CL:0002601 (uterine smooth muscle cell),CL:1000487 (smooth muscle cell of prostate) |
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derives from: | FF:0000167 (smooth muscle cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000192 (smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data