CL:0000738: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue." [GOC:add, GOC:tfm, ISBN:978-0-323-05290-0] | ||
|derives_from= | |derives_from= | ||
|develops_from=CL:0000037 | |develops_from=CL:0000037 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000738 | |||
|is_a=CL:0000219 ;;CL:0000988 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=leukocyte | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002405 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
| | |subset= | ||
| | |synonym="immune cell" EXACT [];;"leucocyte" EXACT [];;"white blood cell" EXACT [] | ||
|union_of= | |||
|xref=BTO:0000751;;FMA:62852 | |||
}} | }} |
Latest revision as of 16:36, 12 September 2014
Name: | leukocyte | |
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Namespace: | FANTOM | |
Definition: | "An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue." [GOC:add, GOC:tfm, ISBN:978-0-323-05290-0] | |
Xrefs: |
| |
Synonyms: |
"immune cell" EXACT [] "leucocyte" EXACT [] "white blood cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000219(motile cell),CL:0000988(hematopoietic cell) |
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develops_from: | CL:0000037(hematopoietic stem cell) |
part_of: | UBERON:0002405(immune system) |
Children
is a: | CL:0000451 (dendritic cell),CL:0000766 (myeloid leukocyte),CL:0002087 (nongranular leukocyte) |
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derives from: | FF:0104973 (Hodgkin lymphoma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
- 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
- 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
- 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
- 10427-106D4 (b cell line:RPMI1788)
- 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
- 10435-106E3 (Hodgkin's lymphoma cell line:HD-Mar2)
- 10455-106G5 (acute lymphoblastic leukemia (B-ALL) cell line:BALL-1)
... further results Mouse (Mus musculus)
- 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
- 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
- 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
- 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
- 10427-106D4 (b cell line:RPMI1788)
- 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
- 10435-106E3 (Hodgkin's lymphoma cell line:HD-Mar2)
- 10455-106G5 (acute lymphoblastic leukemia (B-ALL) cell line:BALL-1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000738 (leukocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data