CL:0000789: Difference between revisions
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|name=alpha-beta T cell | |name=alpha-beta T cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:37, 12 September 2014
| Name: | alpha-beta T cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A T cell that expresses an alpha-beta T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149] |
| Synonyms: |
"alpha-beta T lymphocyte" EXACT [] "alpha-beta T-cell" EXACT [] "alpha-beta T-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000084(T cell) |
|---|---|
| disjoint_from: | CL:0000798(gamma-delta T cell) |
Children
| is a: | CL:0000790 (immature alpha-beta T cell),CL:0000791 (mature alpha-beta T cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10768-110F3
- 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
- 11225-116C1 (CD4+ T Cells, donor1)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11306-117C1 (CD4+ T Cells, donor2)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11382-118B5 (CD4+ T Cells, donor3)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
... further results Mouse (Mus musculus)
- 10768-110F3
- 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
- 11225-116C1 (CD4+ T Cells, donor1)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11306-117C1 (CD4+ T Cells, donor2)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11382-118B5 (CD4+ T Cells, donor3)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000789 (alpha-beta T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.82e-125 | FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_5f1893d085f8094d793789f7db20c059 | p@chr5:35859622..35859626, + |
| 4.82e-125 | FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_5f1893d085f8094d793789f7db20c059 | p@chr5:35859622..35859626, + |
| 2.55e-96 | FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_4a5fd1fe7cc79ea69e4ba0c900e31a10 | p@chr15:89179440..89179457, - |
| 2.55e-96 | FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_4a5fd1fe7cc79ea69e4ba0c900e31a10 | p@chr15:89179440..89179457, - |
| 1.42e-94 | FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_7b05b25412418bcfe2d365e2b75f3d7b | p@chr5:35854487..35854499, - |
| 1.42e-94 | FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_7b05b25412418bcfe2d365e2b75f3d7b | p@chr5:35854487..35854499, - |
| 1.09e-92 | FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_7817f69b372c72c8c6e3286dfc64152c | p@chr5:35854779..35854826, + |
| 1.09e-92 | FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_7817f69b372c72c8c6e3286dfc64152c | p@chr5:35854779..35854826, + |
| 4.33e-92 | FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_f5dd3e9a4347e3287ef98a84b663f5e9 | p@chr4:103551892..103551903, - |
| 4.33e-92 | FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_f5dd3e9a4347e3287ef98a84b663f5e9 | p@chr4:103551892..103551903, - |
| 1.97e-90 | FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_cc7a9b0c0bd5ac2983837e2211836993 | p@chr5:35856882..35856909, - |
| 1.97e-90 | FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_cc7a9b0c0bd5ac2983837e2211836993 | p@chr5:35856882..35856909, - |
| 2.93e-90 | FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_b16160d0ad2d94e961a3806bca441253 | p1@GTSCR1 |
| 2.93e-90 | FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_b16160d0ad2d94e961a3806bca441253 | p1@GTSCR1 |
| 5.78e-88 | FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_eb3b4db570c6a956a4f26bb64d3bb809 | p@chr7:97880779..97880793, + |
| 5.78e-88 | FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_eb3b4db570c6a956a4f26bb64d3bb809 | p@chr7:97880779..97880793, + |
| 8.73e-88 | FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_5309d9a6e21c1ed8d6cfc45e15c76cb8 | p@chr1:25255894..25255906, + |
| 8.73e-88 | FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_5309d9a6e21c1ed8d6cfc45e15c76cb8 | p@chr1:25255894..25255906, + |
| 4.59e-87 | FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_563e369f0c5c47dc280b964c033970b1 | p10@HNRPLL |
| 4.59e-87 | FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_563e369f0c5c47dc280b964c033970b1 | p10@HNRPLL |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_4c63b74c7d46234b4003b4b0967806ac | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_4c63b74c7d46234b4003b4b0967806ac | p3@Tnfrsf25 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_4c63b74c7d46234b4003b4b0967806ac | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_4c63b74c7d46234b4003b4b0967806ac | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_4c63b74c7d46234b4003b4b0967806ac | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_4c63b74c7d46234b4003b4b0967806ac | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_4c63b74c7d46234b4003b4b0967806ac | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_4c63b74c7d46234b4003b4b0967806ac | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_4c63b74c7d46234b4003b4b0967806ac | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_4c63b74c7d46234b4003b4b0967806ac | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_4c63b74c7d46234b4003b4b0967806ac | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_4c63b74c7d46234b4003b4b0967806ac | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_4c63b74c7d46234b4003b4b0967806ac | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_4c63b74c7d46234b4003b4b0967806ac | p3@Tnfrsf25 |
| 2.98e-86 | FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_3f4983a27d0cd5fcd1e795fa14eb58b6 | p@chr10:14611822..14611844, - |
| 2.98e-86 | FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_3f4983a27d0cd5fcd1e795fa14eb58b6 | p@chr10:14611822..14611844, - |
| 3.57e-86 | FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_e903fde8d637e2fed2beb45594018b03 | p@chr4:90205082..90205093, + |
| 3.57e-86 | FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_e903fde8d637e2fed2beb45594018b03 | p@chr4:90205082..90205093, + |
| 9.89e-85 | FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_accc5acf9e256fbdbcfc0de62658053a | p@chr16:57162957..57162973, + |
| 9.89e-85 | FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_accc5acf9e256fbdbcfc0de62658053a | p@chr16:57162957..57162973, + |
| 1.01e-83 | FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_7eda97d7261c0dd6348c00e60fc23ef0 | p@chr2:87053288..87053295, - |
| 1.01e-83 | FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_7eda97d7261c0dd6348c00e60fc23ef0 | p@chr2:87053288..87053295, - |
| 1.1e-83 | FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_3bda5ff4f3f3dab2ebc5bc483af44aa8 | p@chr6:128299606..128299618, + |
| 1.1e-83 | FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_3bda5ff4f3f3dab2ebc5bc483af44aa8 | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_3bda5ff4f3f3dab2ebc5bc483af44aa8 | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_3bda5ff4f3f3dab2ebc5bc483af44aa8 | p@chr6:128299606..128299618, + |
| 1.69e-83 | FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_9e066ac790748aa4b66062bf2bf24ad2 | p@chr5:35780579..35780585, + |
| 1.69e-83 | FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_9e066ac790748aa4b66062bf2bf24ad2 | p@chr5:35780579..35780585, + |
| 1.02e-82 | FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_9dc8fa700d3ffb19202916f7fb706552 | p@chr5:35859218..35859252, - |
| 1.02e-82 | FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_9dc8fa700d3ffb19202916f7fb706552 | p@chr5:35859218..35859252, - |
| 1.33e-82 | FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_ab86fdb7551abb3199302f98ca8a46bf | p@chr12:49375076..49375089, - |
| 1.33e-82 | FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_ab86fdb7551abb3199302f98ca8a46bf | p@chr12:49375076..49375089, - |
| 3.02e-82 | FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_c2d56c1c9a3aed6621061e322458a03a | p@chr10:9060907..9060927, - |
| 3.02e-82 | FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_c2d56c1c9a3aed6621061e322458a03a | p@chr10:9060907..9060927, - |
| 4.05e-82 | FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_2d7e593e3e23754ced0ec06f5c465f45 | p@chr12:10561626..10561641, - |
| 4.05e-82 | FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_2d7e593e3e23754ced0ec06f5c465f45 | p@chr12:10561626..10561641, - |
| 4.31e-82 | FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_d371eb928bc6724893baf6b43e0a2ddf | p@chr7:150178764..150178778, - |
| 4.31e-82 | FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_d371eb928bc6724893baf6b43e0a2ddf | p@chr7:150178764..150178778, - |
| 5.81e-82 | FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_916800104ef13cb25939fb28fa7d2d32 | p@chr2:182038499..182038509, + |
| 5.81e-82 | FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_916800104ef13cb25939fb28fa7d2d32 | p@chr2:182038499..182038509, + |
| 1.02e-81 | FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_52b22777d4102f5210277f516c2d56ac | p@chr4:4271366..4271377, - |
| 1.02e-81 | FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_52b22777d4102f5210277f516c2d56ac | p@chr4:4271366..4271377, - |
| 8.22e-81 | FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_f44747e2b63de2f64a1068da19c05b6c | p10@ATM |
| 8.22e-81 | FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_f44747e2b63de2f64a1068da19c05b6c | p10@ATM |
| 2.22e-80 | FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_a1f51d72ab1cd0d8149cc028f4d52414 | p@chr12:12867774..12867787, - |
| 2.22e-80 | FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_a1f51d72ab1cd0d8149cc028f4d52414 | p@chr12:12867774..12867787, - |
| 8.6e-79 | FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_6be7ef412b84b056af221c0327a12114 | p@chr5:67571114..67571129, - |
| 8.6e-79 | FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_6be7ef412b84b056af221c0327a12114 | p@chr5:67571114..67571129, - |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_191bca638bb77e2afa6b4f783f80920b | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_191bca638bb77e2afa6b4f783f80920b | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_191bca638bb77e2afa6b4f783f80920b | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_191bca638bb77e2afa6b4f783f80920b | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_191bca638bb77e2afa6b4f783f80920b | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_191bca638bb77e2afa6b4f783f80920b | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_191bca638bb77e2afa6b4f783f80920b | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_191bca638bb77e2afa6b4f783f80920b | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_191bca638bb77e2afa6b4f783f80920b | p@chr8:84082784..84082795, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_191bca638bb77e2afa6b4f783f80920b | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_191bca638bb77e2afa6b4f783f80920b | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_191bca638bb77e2afa6b4f783f80920b | p@chr8:84082784..84082795, + |
| 2.56e-78 | FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_d239ef9f41dfbc3f4a005088e23d8c9f | p@chr6:143228788..143228799, - |
| 2.56e-78 | FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_d239ef9f41dfbc3f4a005088e23d8c9f | p@chr6:143228788..143228799, - |
| 2.82e-78 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_58709b213c9c424fdf7d427c0e50cd0d | p@chr5:123440767..123440778, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_58709b213c9c424fdf7d427c0e50cd0d | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_58709b213c9c424fdf7d427c0e50cd0d | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_58709b213c9c424fdf7d427c0e50cd0d | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_58709b213c9c424fdf7d427c0e50cd0d | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_58709b213c9c424fdf7d427c0e50cd0d | p@chr5:123440767..123440778, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_31c4239e4524b08eb200e9fb95c91647 | p@chr15:27786221..27786240, - |
| 3.46e-78 | FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_31c4239e4524b08eb200e9fb95c91647 | p@chr15:27786221..27786240, - |
| 4.25e-78 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_cc93b374754a3bdae7332b257ece20ca | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_cc93b374754a3bdae7332b257ece20ca | p@chr3:103672068..103672090, - |
| 4.25e-78 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_cc93b374754a3bdae7332b257ece20ca | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_cc93b374754a3bdae7332b257ece20ca | p@chr3:103672068..103672090, - |
| 5.22e-78 | FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_f62f9a1d487f04614522e1a725106cad | p@chr6:48634453..48634468, - |
| 5.22e-78 | FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_f62f9a1d487f04614522e1a725106cad | p@chr6:48634453..48634468, - |
| 6.45e-78 | FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_e95e9802701c477378a037edc0865b99 | p@chr7:36816941..36816949, + |
| 6.45e-78 | FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_e95e9802701c477378a037edc0865b99 | p@chr7:36816941..36816949, + |
| 7.86e-78 | FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_f0afe4b8a4cd2886263b4a206681912f | p5@uc007vxz.1 |
| 7.86e-78 | FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_f0afe4b8a4cd2886263b4a206681912f | p5@uc007vxz.1 |
