CL:0000898: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Mature T cell not yet exposed to antigen with the phenotype CCR7-positive, CD45RA-positive, and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low." [GO_REF:0000031, GOC:add, GOC:pam, GOC:tfm, PMID:19100699] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000898 | |||
|is_a=CL:0002419 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=naive T cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |||
|subset= | |||
|synonym="naive T lymphocyte" EXACT [];;"naive T-cell" EXACT [];;"naive T-lymphocyte" EXACT [] | |||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:38, 12 September 2014
| Name: | naive T cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "Mature T cell not yet exposed to antigen with the phenotype CCR7-positive, CD45RA-positive, and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low." [GO_REF:0000031, GOC:add, GOC:pam, GOC:tfm, PMID:19100699] |
| Synonyms: |
"naive T lymphocyte" EXACT [] "naive T-cell" EXACT [] "naive T-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002419(mature T cell) |
|---|
Children
| is a: | CL:0000895 (naive thymus-derived CD4-positive, alpha-beta T cell),CL:0002677 (naive regulatory T cell) |
|---|---|
| disjoint from: | CL:0000813 (memory T cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
- 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
- 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
- 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
- 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))
- 11817-124E8 (CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl))
- 11819-124F1 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl))
- 11820-124F2 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl))
Mouse (Mus musculus)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
- 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
- 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
- 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
- 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))
- 11817-124E8 (CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl))
- 11819-124F1 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl))
- 11820-124F2 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000898 (naive T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
