CL:0002092: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells." [GOC:tfm, ISBN:0618947256] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002092 | |||
|is_a=CL:0001035 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=bone marrow cell | ||
|namespace=FANTOM | |||
|obo_creation_date=2010-07-22T04:48:15Z | |||
|part_of=UBERON:0002371 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=BTO:0004850;;FMA:83621 | |||
}} | }} |
Latest revision as of 16:40, 12 September 2014
Name: | bone marrow cell | |
---|---|---|
Namespace: | FANTOM | |
Definition: | "A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells." [GOC:tfm, ISBN:0618947256] | |
Xrefs: |
| |
Created by: | tmeehan | |
Creation date: | 2010-07-22T04:48:15Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0001035(bone cell) |
---|---|
part_of: | UBERON:0002371(bone marrow) |
Children
is a: | CL:0002540 (mesenchymal stem cell of the bone marrow),CL:1001610 (bone marrow hematopoietic cell) |
---|---|
derives from: | FF:0000020 (human CD133-positive progenitor cell- bone marrow derived sample),FF:0100583 (bone marrow cancer cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10474-106I6 (myeloma cell line:PCM6)
- 10574-108B7
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10731-110B2
- 10745-110C7
- 10773-110F8
- 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
- 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
- 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
... further results Mouse (Mus musculus)
- 10474-106I6 (myeloma cell line:PCM6)
- 10574-108B7
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10731-110B2
- 10745-110C7
- 10773-110F8
- 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
- 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
- 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002092 (bone marrow cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data