Personal tools

CL:0002159: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002159
|alt_id=
|name=general ecto-epithelial cell
|namespace=cell
|def="Epithelial cells derived from general body ectoderm and ectoderm placodes." [GOC:tfm]
|xref=FMA:70556
|is_a=CL:0002077
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-08-26T08:31:08Z
|def="Epithelial cells derived from general body ectoderm and ectoderm placodes." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002159
|is_a=CL:0002077
|is_obsolete=
|located_in=
|located_in=
|name=general ecto-epithelial cell
|namespace=FANTOM
|obo_creation_date=2010-08-26T08:31:08Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:70556
}}
}}

Latest revision as of 16:40, 12 September 2014

Name:general ecto-epithelial cell
Namespace:FANTOM
Definition:"Epithelial cells derived from general body ectoderm and ectoderm placodes." [GOC:tfm]
Xrefs:
links:
FMA:70556
Created by:tmeehan
Creation date:2010-08-26T08:31:08Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002077(ecto-epithelial cell)



Children


is a:CL:0000362 (epidermal cell),CL:0000575 (corneal epithelial cell),CL:0002166 (epithelial cell of Malassez),CL:0002308 (epithelial cell of skin gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002159 (general ecto-epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.93e-64FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_f8e80fa55bd0bf6d73a219a410cd9fd4p2@HEPHL1
7.93e-64FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_f8e80fa55bd0bf6d73a219a410cd9fd4p2@HEPHL1
1.65e-63FFCP PHASE1:Hg19::chr6:35048829..35048844,+#_c4c6817891e860d35eb36ca82f542964p@chr6:35048829..35048844, +
1.65e-63FFCP PHASE2:Hg19::chr6:35048829..35048844,+#_c4c6817891e860d35eb36ca82f542964p@chr6:35048829..35048844, +
1.17e-62FFCP PHASE2:Hg19::chr18:37539064..37539087,+#_8cfd08919b54bdf485e378743600a24dp@chr18:37539064..37539087, +
1.17e-62FFCP PHASE1:Hg19::chr18:37539064..37539087,+#_8cfd08919b54bdf485e378743600a24dp@chr18:37539064..37539087, +
2.82e-62FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_b9a1c3376e7372254d7d998ccf86ae0ap@chr13:30259768..30259777, +
2.82e-62FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_b9a1c3376e7372254d7d998ccf86ae0ap@chr13:30259768..30259777, +
1.39e-59FFCP PHASE1:Hg19::chr12:56333189..56333202,+#_2a749c22dba2487fdafc076efb19c4d4p12@DGKA
1.39e-59FFCP PHASE2:Hg19::chr12:56333189..56333202,+#_2a749c22dba2487fdafc076efb19c4d4p12@DGKA
1.85e-56FFCP PHASE1:Hg19::chr18:9538358..9538360,+#_d1de0d891842f8f3cc4900ad9ef9a1eap@chr18:9538358..9538360, +
1.85e-56FFCP PHASE2:Hg19::chr18:9538358..9538360,+#_d1de0d891842f8f3cc4900ad9ef9a1eap@chr18:9538358..9538360, +
2.99e-56FFCP PHASE1:Hg19::chr5:167247199..167247212,+#_f0c27755063fc81ac6cb7e495524935bp@chr5:167247199..167247212, +
2.99e-56FFCP PHASE2:Hg19::chr5:167247199..167247212,+#_f0c27755063fc81ac6cb7e495524935bp@chr5:167247199..167247212, +
3.29e-56FFCP PHASE2:Hg19::chr12:46897588..46897603,+#_9c65fb1f4c8f29798ba15623ad973481p@chr12:46897588..46897603, +
3.29e-56FFCP PHASE1:Hg19::chr12:46897588..46897603,+#_9c65fb1f4c8f29798ba15623ad973481p@chr12:46897588..46897603, +
7.06e-56FFCP PHASE2:Hg19::chr8:141728760..141728771,-#_ec71f0961e5e8915afe89fd931c6f24ep36@PTK2
7.06e-56FFCP PHASE1:Hg19::chr8:141728760..141728771,-#_ec71f0961e5e8915afe89fd931c6f24ep36@PTK2
1.05e-55FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_4490b4580a3490973dc1a1a71d3009f5p5@EPN3
1.05e-55FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_4490b4580a3490973dc1a1a71d3009f5p5@EPN3
3.19e-54FFCP PHASE1:Hg19::chr13:30259714..30259730,+#_e2b96e628ee4e6e7f0482b74d547d727p@chr13:30259714..30259730, +
3.19e-54FFCP PHASE2:Hg19::chr13:30259714..30259730,+#_e2b96e628ee4e6e7f0482b74d547d727p@chr13:30259714..30259730, +
1.03e-53FFCP PHASE2:Hg19::chr7:40855279..40855286,+#_6e647e7ead0dfaf8c9564e391dcbb4d6p@chr7:40855279..40855286, +
1.03e-53FFCP PHASE1:Hg19::chr7:40855279..40855286,+#_6e647e7ead0dfaf8c9564e391dcbb4d6p@chr7:40855279..40855286, +
1.24e-52FFCP PHASE2:Hg19::chr17:39742822..39742850,+#_892e8db02a5e3d07330ba0ed9c2c0c0bp@chr17:39742822..39742850, +
1.24e-52FFCP PHASE1:Hg19::chr17:39742822..39742850,+#_892e8db02a5e3d07330ba0ed9c2c0c0bp@chr17:39742822..39742850, +
1.44e-51FFCP PHASE1:Hg19::chr11:121421125..121421135,+#_e423d035ea3d933c10f1973004e7a4edp@chr11:121421125..121421135, +
1.44e-51FFCP PHASE2:Hg19::chr11:121421125..121421135,+#_e423d035ea3d933c10f1973004e7a4edp@chr11:121421125..121421135, +
1.52e-50FFCP PHASE2:Hg19::chr10:118187325..118187332,+#_e2cb096c08a9701188ace07f859ffcbfp5@PNLIPRP3
1.52e-50FFCP PHASE1:Hg19::chr10:118187325..118187332,+#_e2cb096c08a9701188ace07f859ffcbfp5@PNLIPRP3
1.69e-50FFCP PHASE2:Hg19::chr9:27524485..27524505,+#_cb4aa1c3bab1fa71c6179b44b2536567p2@IFNK
1.69e-50FFCP PHASE1:Hg19::chr9:27524485..27524505,+#_cb4aa1c3bab1fa71c6179b44b2536567p2@IFNK
3.74e-49FFCP PHASE1:Hg19::chr6:29643393..29643442,-#_e580c877ea60fc83766c79de95307accp@chr6:29643393..29643442, -
3.74e-49FFCP PHASE2:Hg19::chr6:29643393..29643442,-#_e580c877ea60fc83766c79de95307accp@chr6:29643393..29643442, -
4.28e-46FFCP PHASE1:Hg19::chr5:167247103..167247112,+#_092f6713b078ac98a9048dc632eeef5cp@chr5:167247103..167247112, +
4.28e-46FFCP PHASE2:Hg19::chr5:167247103..167247112,+#_092f6713b078ac98a9048dc632eeef5cp@chr5:167247103..167247112, +
1.39e-45FFCP PHASE2:Hg19::chr7:40883521..40883532,+#_28c835b86aedaeb023c9318c86a74cd8p@chr7:40883521..40883532, +
1.39e-45FFCP PHASE1:Hg19::chr7:40883521..40883532,+#_28c835b86aedaeb023c9318c86a74cd8p@chr7:40883521..40883532, +
4.33e-45FFCP PHASE2:Hg19::chr12:52908762..52908781,+#_d5b3ad7c0b7580fa3e17f1c60b3a3204p10@CU687195
4.33e-45FFCP PHASE1:Hg19::chr12:52908762..52908781,+#_d5b3ad7c0b7580fa3e17f1c60b3a3204p10@CU687195
2.34e-44FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_a359ff813bd44c875908b7e931d4776cp@chr10:106205489..106205498, +
2.34e-44FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_a359ff813bd44c875908b7e931d4776cp@chr10:106205489..106205498, +
2.96e-43FFCP PHASE2:Hg19::chr12:52867616..52867640,-#_d90f37499dee20fc8381ef4a1cf9a53fp2@KRT6C
2.96e-43FFCP PHASE1:Hg19::chr12:52867616..52867640,-#_d90f37499dee20fc8381ef4a1cf9a53fp2@KRT6C
4.85e-43FFCP PHASE2:Hg19::chr16:57954541..57954548,-#_89fe19cb64ce120c8113342fd0f02f0ep@chr16:57954541..57954548, -
4.85e-43FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_89fe19cb64ce120c8113342fd0f02f0ep@chr22:23586671..23586679, +
4.85e-43FFCP PHASE1:Hg19::chr16:57954541..57954548,-#_89fe19cb64ce120c8113342fd0f02f0ep@chr16:57954541..57954548, -
4.85e-43FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_89fe19cb64ce120c8113342fd0f02f0ep@chr22:23586671..23586679, +
1.5e-42FFCP PHASE1:Hg19::chr6:43154685..43154696,+#_939c3b1b20eddbd3d3e7baab3f24326bp3@CUL9
1.5e-42FFCP PHASE2:Hg19::chr6:43154685..43154696,+#_939c3b1b20eddbd3d3e7baab3f24326bp3@CUL9
2.77e-42FFCP PHASE2:Hg19::chr12:58159508..58159526,+#_9d72f4f0dd99f3b5b9207d1067bc5ec5p@chr12:58159508..58159526, +
2.77e-42FFCP PHASE1:Hg19::chr12:58159508..58159526,+#_9d72f4f0dd99f3b5b9207d1067bc5ec5p@chr12:58159508..58159526, +
3.69e-42FFCP PHASE2:Hg19::chr17:73750858..73750868,+#_b1a1a1481c554f50ae2229b67232fe15p@chr17:73750858..73750868, +
3.69e-42FFCP PHASE1:Hg19::chr17:73750858..73750868,+#_b1a1a1481c554f50ae2229b67232fe15p@chr17:73750858..73750868, +
6.34e-41FFCP PHASE2:Hg19::chr1:2359111..2359148,+#_5013e0ee482d82069e6fddc70b2ae993p@chr1:2359111..2359148, +
6.34e-41FFCP PHASE1:Hg19::chr1:2359111..2359148,+#_5013e0ee482d82069e6fddc70b2ae993p@chr1:2359111..2359148, +
7.12e-40FFCP PHASE1:Hg19::chr8:49783129..49783154,+#_80e90322f168eb007fb75ba3e0217e65p@chr8:49783129..49783154, +
7.12e-40FFCP PHASE2:Hg19::chr8:49783129..49783154,+#_80e90322f168eb007fb75ba3e0217e65p@chr8:49783129..49783154, +
2.25e-39FFCP PHASE2:Hg19::chr17:38120375..38120394,+#_52338b835fabdaf6eb960f9a7cfbfe46p@chr17:38120375..38120394, +
2.25e-39FFCP PHASE1:Hg19::chr17:38120375..38120394,+#_52338b835fabdaf6eb960f9a7cfbfe46p@chr17:38120375..38120394, +
2.9e-39FFCP PHASE1:Hg19::chr10:106205466..106205487,+#_10c5b4fc272b97553b60e6d261db30afp@chr10:106205466..106205487, +
2.9e-39FFCP PHASE2:Hg19::chr10:106205466..106205487,+#_10c5b4fc272b97553b60e6d261db30afp@chr10:106205466..106205487, +
8.64e-39FFCP PHASE2:Hg19::chr11:16119201..16119231,-#_199c7630522de9d67af6a67a851f57c1p@chr11:16119201..16119231, -
8.64e-39FFCP PHASE1:Hg19::chr11:16119201..16119231,-#_199c7630522de9d67af6a67a851f57c1p@chr11:16119201..16119231, -
2.17e-38FFCP PHASE2:Hg19::chr1:2359091..2359102,+#_9c5cfbb37b60e207ad110fa8fb6eef77p@chr1:2359091..2359102, +
2.17e-38FFCP PHASE1:Hg19::chr1:2359091..2359102,+#_9c5cfbb37b60e207ad110fa8fb6eef77p@chr1:2359091..2359102, +
3.38e-38FFCP PHASE2:Hg19::chr1:16090914..16090925,+#_e66525616f1a4c39ff11ad72aed13c20p22@FBLIM1
3.38e-38FFCP PHASE1:Hg19::chr1:16090914..16090925,+#_e66525616f1a4c39ff11ad72aed13c20p22@FBLIM1
3.72e-38FFCP PHASE2:Hg19::chr4:184651265..184651270,+#_10da36fd659dfd4838bdd0fdd51658aep@chr4:184651265..184651270, +
3.72e-38FFCP PHASE1:Hg19::chr4:184651265..184651270,+#_10da36fd659dfd4838bdd0fdd51658aep@chr4:184651265..184651270, +
4.5e-38FFCP PHASE2:Hg19::chr11:102140952..102140956,+#_187d493bd650ffdbffeb6d7129143a3dp@chr11:102140952..102140956, +
4.5e-38FFCP PHASE1:Hg19::chr11:102140952..102140956,+#_187d493bd650ffdbffeb6d7129143a3dp@chr11:102140952..102140956, +
4.73e-38FFCP PHASE1:Hg19::chr1:44381095..44381120,+#_3c26b21360a71abfa9e333051c46a260p@chr1:44381095..44381120, +
4.73e-38FFCP PHASE2:Hg19::chr1:44381095..44381120,+#_3c26b21360a71abfa9e333051c46a260p@chr1:44381095..44381120, +
5.34e-38FFCP PHASE2:Hg19::chr12:28124953..28124957,-#_34d2f099a5ff639d8f908370389b74f3p6@PTHLH
5.34e-38FFCP PHASE1:Hg19::chr12:28124953..28124957,-#_34d2f099a5ff639d8f908370389b74f3p6@PTHLH
6.1e-38FFCP PHASE2:Hg19::chr7:40883552..40883571,+#_682b046466cf64350d1d0b62c9b820e8p@chr7:40883552..40883571, +
6.1e-38FFCP PHASE1:Hg19::chr7:40883552..40883571,+#_682b046466cf64350d1d0b62c9b820e8p@chr7:40883552..40883571, +
6.6e-38FFCP PHASE1:Hg19::chr6:43154656..43154671,+#_3434f08e417fcaa4e8940530f40c8202p5@CUL9
6.6e-38FFCP PHASE2:Hg19::chr6:43154656..43154671,+#_3434f08e417fcaa4e8940530f40c8202p5@CUL9
6.97e-38FFCP PHASE2:Hg19::chr12:52844247..52844256,-#_b5d9d4968cf0ffbcb49f621aa28a7eb0p@chr12:52844247..52844256, -
6.97e-38FFCP PHASE1:Hg19::chr12:52844247..52844256,-#_b5d9d4968cf0ffbcb49f621aa28a7eb0p@chr12:52844247..52844256, -
7.36e-38FFCP PHASE2:Hg19::chr2:69027041..69027079,+#_03e32ae8b1ac04fb4290790f4a170c98p@chr2:69027041..69027079, +
7.36e-38FFCP PHASE1:Hg19::chr2:69027041..69027079,+#_03e32ae8b1ac04fb4290790f4a170c98p@chr2:69027041..69027079, +
8.23e-38FFCP PHASE2:Hg19::chr17:39740629..39740632,-#_5962b359351bcce2c04699c948cd5566p9@KRT14
8.23e-38FFCP PHASE1:Hg19::chr17:39740629..39740632,-#_5962b359351bcce2c04699c948cd5566p9@KRT14
1.93e-37FFCP PHASE2:Hg19::chr5:65542106..65542109,+#_dc2685761e79db98f195b3d1486737a0p@chr5:65542106..65542109, +
1.93e-37FFCP PHASE1:Hg19::chr5:65542106..65542109,+#_dc2685761e79db98f195b3d1486737a0p@chr5:65542106..65542109, +
2.75e-37FFCP PHASE1:Hg19::chr5:167246696..167246714,+#_5efe96d1dc3ce93bc43000904785c24ap@chr5:167246696..167246714, +
2.75e-37FFCP PHASE2:Hg19::chr5:167246696..167246714,+#_5efe96d1dc3ce93bc43000904785c24ap@chr5:167246696..167246714, +
2.87e-37FFCP PHASE2:Hg19::chr1:183177076..183177103,+#_b03d4bb62fe1b2f0e177ff94b2611ae9p@chr1:183177076..183177103, +
2.87e-37FFCP PHASE1:Hg19::chr1:183177076..183177103,+#_b03d4bb62fe1b2f0e177ff94b2611ae9p@chr1:183177076..183177103, +
3.96e-37FFCP PHASE2:Hg19::chr12:122430074..122430090,+#_9d2bf33d3e9234715168f358715cedd3p@chr12:122430074..122430090, +
3.96e-37FFCP PHASE1:Hg19::chr12:122430074..122430090,+#_9d2bf33d3e9234715168f358715cedd3p@chr12:122430074..122430090, +
1.99e-36FFCP PHASE1:Hg19::chr1:77461159..77461182,+#_2643852adff1ae9167fb94e82a27c5b8p3@ST6GALNAC5
1.99e-36FFCP PHASE2:Hg19::chr1:77461159..77461182,+#_2643852adff1ae9167fb94e82a27c5b8p3@ST6GALNAC5
2.09e-36FFCP PHASE1:Hg19::chr6:43154700..43154713,+#_e7fea0a9b8a4fddbb47486b80cc2a033p2@CUL9
2.09e-36FFCP PHASE2:Hg19::chr6:43154700..43154713,+#_e7fea0a9b8a4fddbb47486b80cc2a033p2@CUL9
3.28e-36FFCP PHASE1:Hg19::chr21:44957855..44957891,-#_e43cc22709b354da1888df418dcff7bap@chr21:44957855..44957891, -
3.28e-36FFCP PHASE2:Hg19::chr21:44957855..44957891,-#_e43cc22709b354da1888df418dcff7bap@chr21:44957855..44957891, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002159&oldid=3275418"