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{{CL
{{CL
|id=CL:0002178
|alt_id=CL:1000399
|name=epithelial cell of stomach
|namespace=cell
|def="An epithelial cell found in the lining of the stomach." [GOC:tfm]
|xref=FMA:62948
|is_a=CL:0002251
|synonym=
|comment=
|comment=
|alt_id=CL:1000399
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-08-25T03:22:08Z
|def="An epithelial cell found in the lining of the stomach." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002178
|is_a=CL:0002251
|is_obsolete=
|located_in=
|located_in=
|name=epithelial cell of stomach
|namespace=FANTOM
|obo_creation_date=2010-08-25T03:22:08Z
|part_of=UBERON:0000945
|part_of=UBERON:0000945
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:62948
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:epithelial cell of stomach
Namespace:FANTOM
Definition:"An epithelial cell found in the lining of the stomach." [GOC:tfm]
Xrefs:
links:
FMA:62948
Alt_id: CL:1000399
Created by:tmeehan
Creation date:2010-08-25T03:22:08Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002251(epithelial cell of alimentary canal)
part_of:UBERON:0000945(stomach)



Children


derives from:FF:0101092 (KATO-III cell sample),FF:0102380 (gastric adenocarcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002178 (epithelial cell of stomach), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.52e-87FFCP PHASE2:Hg19::chr19:1753387..1753395,-#_484214a158bbc328f0a0262505b8c05dp@chr19:1753387..1753395, -
1.52e-87FFCP PHASE1:Hg19::chr19:1753387..1753395,-#_484214a158bbc328f0a0262505b8c05dp@chr19:1753387..1753395, -
2.39e-66FFCP PHASE2:Hg19::chr2:37609861..37609884,+#_2b734a3ac8f80b200306128d02b9bd33p@chr2:37609861..37609884, +
2.39e-66FFCP PHASE1:Hg19::chr20:61278219..61278228,-#_2b734a3ac8f80b200306128d02b9bd33p@chr20:61278219..61278228, -
2.39e-66FFCP PHASE1:Hg19::chr10:123310876..123310882,-#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123310876..123310882, -
2.39e-66FFCP PHASE1:Hg19::chr5:167545081..167545101,+#_2b734a3ac8f80b200306128d02b9bd33p46@ODZ2
2.39e-66FFCP PHASE1:Hg19::chr17:70417540..70417544,-#_2b734a3ac8f80b200306128d02b9bd33p@chr17:70417540..70417544, -
2.39e-66FFCP PHASE1:Hg19::chr2:29220315..29220325,+#_2b734a3ac8f80b200306128d02b9bd33p@chr2:29220315..29220325, +
2.39e-66FFCP PHASE2:Hg19::chr1:1064144..1064148,-#_2b734a3ac8f80b200306128d02b9bd33p@chr1:1064144..1064148, -
2.39e-66FFCP PHASE2:Hg19::chr10:122520908..122520928,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122520908..122520928, +
2.39e-66FFCP PHASE1:Hg19::chr3:124209926..124209941,-#_2b734a3ac8f80b200306128d02b9bd33p@chr3:124209926..124209941, -
2.39e-66FFCP PHASE1:Hg19::chr13:73809919..73809926,+#_2b734a3ac8f80b200306128d02b9bd33p@chr13:73809919..73809926, +
2.39e-66FFCP PHASE1:Hg19::chr10:123378808..123378819,-#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123378808..123378819, -
2.39e-66FFCP PHASE2:Hg19::chr2:29220301..29220308,+#_2b734a3ac8f80b200306128d02b9bd33p@chr2:29220301..29220308, +
2.39e-66FFCP PHASE2:Hg19::chr5:496367..496402,-#_2b734a3ac8f80b200306128d02b9bd33p@chr5:496367..496402, -
2.39e-66FFCP PHASE2:Hg19::chr15:42186211..42186222,-#_2b734a3ac8f80b200306128d02b9bd33p2@SPTBN5
2.39e-66FFCP PHASE1:Hg19::chr20:61298260..61298263,-#_2b734a3ac8f80b200306128d02b9bd33p3@ENST00000411824
2.39e-66FFCP PHASE1:Hg19::chr10:123256229..123256238,-#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123256229..123256238, -
2.39e-66FFCP PHASE2:Hg19::chr10:123000012..123000015,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123000012..123000015, +
2.39e-66FFCP PHASE2:Hg19::chr2:9324969..9324972,-#_2b734a3ac8f80b200306128d02b9bd33p@chr2:9324969..9324972, -
2.39e-66FFCP PHASE2:Hg19::chr10:29217861..29217870,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:29217861..29217870, +
2.39e-66FFCP PHASE1:Hg19::chr10:122520831..122520842,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122520831..122520842, +
2.39e-66FFCP PHASE2:Hg19::chr20:61298207..61298221,-#_2b734a3ac8f80b200306128d02b9bd33p2@ENST00000411824
2.39e-66FFCP PHASE1:Hg19::chr19:10142279..10142292,-#_2b734a3ac8f80b200306128d02b9bd33p@chr19:10142279..10142292, -
2.39e-66FFCP PHASE1:Hg19::chr6:110282878..110282882,-#_2b734a3ac8f80b200306128d02b9bd33p@chr6:110282878..110282882, -
2.39e-66FFCP PHASE1:Hg19::chr20:61299085..61299091,+#_2b734a3ac8f80b200306128d02b9bd33p24@SLCO4A1
2.39e-66FFCP PHASE2:Hg19::chr2:121082746..121082759,-#_2b734a3ac8f80b200306128d02b9bd33p@chr2:121082746..121082759, -
2.39e-66FFCP PHASE1:Hg19::chr11:76903378..76903384,+#_2b734a3ac8f80b200306128d02b9bd33p@chr11:76903378..76903384, +
2.39e-66FFCP PHASE1:Hg19::chr10:123313149..123313152,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123313149..123313152, +
2.39e-66FFCP PHASE1:Hg19::chr15:42186200..42186205,-#_2b734a3ac8f80b200306128d02b9bd33p3@SPTBN5
2.39e-66FFCP PHASE1:Hg19::chr5:167545123..167545128,+#_2b734a3ac8f80b200306128d02b9bd33p60@ODZ2
2.39e-66FFCP PHASE1:Hg19::chr10:29217811..29217823,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:29217811..29217823, +
2.39e-66FFCP PHASE2:Hg19::chr22:46406849..46406852,+#_2b734a3ac8f80b200306128d02b9bd33p@chr22:46406849..46406852, +
2.39e-66FFCP PHASE1:Hg19::chr11:27516905..27516910,-#_2b734a3ac8f80b200306128d02b9bd33p25@LIN7C
2.39e-66FFCP PHASE2:Hg19::chr10:122521149..122521164,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122521149..122521164, +
2.39e-66FFCP PHASE2:Hg19::chr20:61278219..61278228,-#_2b734a3ac8f80b200306128d02b9bd33p@chr20:61278219..61278228, -
2.39e-66FFCP PHASE1:Hg19::chr10:123378848..123378857,-#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123378848..123378857, -
2.39e-66FFCP PHASE2:Hg19::chr2:29220315..29220325,+#_2b734a3ac8f80b200306128d02b9bd33p@chr2:29220315..29220325, +
2.39e-66FFCP PHASE1:Hg19::chr5:499786..499794,-#_2b734a3ac8f80b200306128d02b9bd33p@chr5:499786..499794, -
2.39e-66FFCP PHASE2:Hg19::chr15:42186248..42186253,-#_2b734a3ac8f80b200306128d02b9bd33p4@SPTBN5
2.39e-66FFCP PHASE1:Hg19::chr20:61298271..61298272,-#_2b734a3ac8f80b200306128d02b9bd33p5@ENST00000411824
2.39e-66FFCP PHASE2:Hg19::chr3:124209926..124209941,-#_2b734a3ac8f80b200306128d02b9bd33p@chr3:124209926..124209941, -
2.39e-66FFCP PHASE2:Hg19::chr20:61298260..61298263,-#_2b734a3ac8f80b200306128d02b9bd33p3@ENST00000411824
2.39e-66FFCP PHASE2:Hg19::chr17:70417540..70417544,-#_2b734a3ac8f80b200306128d02b9bd33p@chr17:70417540..70417544, -
2.39e-66FFCP PHASE1:Hg19::chr10:122520854..122520858,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122520854..122520858, +
2.39e-66FFCP PHASE1:Hg19::chr2:28762016..28762055,-#_2b734a3ac8f80b200306128d02b9bd33p@chr2:28762016..28762055, -
2.39e-66FFCP PHASE1:Hg19::chr9:130913176..130913179,+#_2b734a3ac8f80b200306128d02b9bd33p@chr9:130913176..130913179, +
2.39e-66FFCP PHASE2:Hg19::chr13:97775112..97775117,+#_2b734a3ac8f80b200306128d02b9bd33p@chr13:97775112..97775117, +
2.39e-66FFCP PHASE1:Hg19::chr15:42186211..42186222,-#_2b734a3ac8f80b200306128d02b9bd33p2@SPTBN5
2.39e-66FFCP PHASE2:Hg19::chr20:61299085..61299091,+#_2b734a3ac8f80b200306128d02b9bd33p24@SLCO4A1
2.39e-66FFCP PHASE2:Hg19::chr11:76903378..76903384,+#_2b734a3ac8f80b200306128d02b9bd33p@chr11:76903378..76903384, +
2.39e-66FFCP PHASE1:Hg19::chr5:167545165..167545170,+#_2b734a3ac8f80b200306128d02b9bd33p61@ODZ2
2.39e-66FFCP PHASE1:Hg19::chr10:29217837..29217846,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:29217837..29217846, +
2.39e-66FFCP PHASE2:Hg19::chr10:123310876..123310882,-#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123310876..123310882, -
2.39e-66FFCP PHASE1:Hg19::chr22:49239060..49239068,+#_2b734a3ac8f80b200306128d02b9bd33p@chr22:49239060..49239068, +
2.39e-66FFCP PHASE2:Hg19::chr5:167545081..167545101,+#_2b734a3ac8f80b200306128d02b9bd33p46@ODZ2
2.39e-66FFCP PHASE1:Hg19::chr17:70619903..70619909,+#_2b734a3ac8f80b200306128d02b9bd33p@chr17:70619903..70619909, +
2.39e-66FFCP PHASE1:Hg19::chr10:122910650..122910656,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122910650..122910656, +
2.39e-66FFCP PHASE1:Hg19::chr2:29220943..29220956,+#_2b734a3ac8f80b200306128d02b9bd33p@chr2:29220943..29220956, +
2.39e-66FFCP PHASE2:Hg19::chr10:123378808..123378819,-#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123378808..123378819, -
2.39e-66FFCP PHASE2:Hg19::chr20:61298271..61298272,-#_2b734a3ac8f80b200306128d02b9bd33p5@ENST00000411824
2.39e-66FFCP PHASE2:Hg19::chr10:123256229..123256238,-#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123256229..123256238, -
2.39e-66FFCP PHASE1:Hg19::chr10:122520908..122520928,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122520908..122520928, +
2.39e-66FFCP PHASE2:Hg19::chr10:122520831..122520842,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122520831..122520842, +
2.39e-66FFCP PHASE2:Hg19::chr6:110282878..110282882,-#_2b734a3ac8f80b200306128d02b9bd33p@chr6:110282878..110282882, -
2.39e-66FFCP PHASE1:Hg19::chr20:61316967..61316974,-#_2b734a3ac8f80b200306128d02b9bd33p@chr20:61316967..61316974, -
2.39e-66FFCP PHASE2:Hg19::chr2:28762016..28762055,-#_2b734a3ac8f80b200306128d02b9bd33p@chr2:28762016..28762055, -
2.39e-66FFCP PHASE1:Hg19::chr5:496367..496402,-#_2b734a3ac8f80b200306128d02b9bd33p@chr5:496367..496402, -
2.39e-66FFCP PHASE1:Hg19::chr6:167684529..167684536,+#_2b734a3ac8f80b200306128d02b9bd33p6@UNC93A
2.39e-66FFCP PHASE1:Hg19::chr20:61298173..61298178,-#_2b734a3ac8f80b200306128d02b9bd33p4@ENST00000411824
2.39e-66FFCP PHASE1:Hg19::chr15:42186248..42186253,-#_2b734a3ac8f80b200306128d02b9bd33p4@SPTBN5
2.39e-66FFCP PHASE2:Hg19::chr13:73809919..73809926,+#_2b734a3ac8f80b200306128d02b9bd33p@chr13:73809919..73809926, +
2.39e-66FFCP PHASE1:Hg19::chr10:29217861..29217870,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:29217861..29217870, +
2.39e-66FFCP PHASE2:Hg19::chr10:123313149..123313152,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123313149..123313152, +
2.39e-66FFCP PHASE2:Hg19::chr5:167545123..167545128,+#_2b734a3ac8f80b200306128d02b9bd33p60@ODZ2
2.39e-66FFCP PHASE1:Hg19::chr10:123000012..123000015,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123000012..123000015, +
2.39e-66FFCP PHASE1:Hg19::chr2:37609861..37609884,+#_2b734a3ac8f80b200306128d02b9bd33p@chr2:37609861..37609884, +
2.39e-66FFCP PHASE2:Hg19::chr10:29217811..29217823,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:29217811..29217823, +
2.39e-66FFCP PHASE2:Hg19::chr11:27516905..27516910,-#_2b734a3ac8f80b200306128d02b9bd33p25@LIN7C
2.39e-66FFCP PHASE2:Hg19::chr2:29220943..29220956,+#_2b734a3ac8f80b200306128d02b9bd33p@chr2:29220943..29220956, +
2.39e-66FFCP PHASE2:Hg19::chr5:499786..499794,-#_2b734a3ac8f80b200306128d02b9bd33p@chr5:499786..499794, -
2.39e-66FFCP PHASE2:Hg19::chr10:123378848..123378857,-#_2b734a3ac8f80b200306128d02b9bd33p@chr10:123378848..123378857, -
2.39e-66FFCP PHASE1:Hg19::chr2:121082746..121082759,-#_2b734a3ac8f80b200306128d02b9bd33p@chr2:121082746..121082759, -
2.39e-66FFCP PHASE1:Hg19::chr1:1064144..1064148,-#_2b734a3ac8f80b200306128d02b9bd33p@chr1:1064144..1064148, -
2.39e-66FFCP PHASE1:Hg19::chr22:46406849..46406852,+#_2b734a3ac8f80b200306128d02b9bd33p@chr22:46406849..46406852, +
2.39e-66FFCP PHASE2:Hg19::chr19:10142279..10142292,-#_2b734a3ac8f80b200306128d02b9bd33p@chr19:10142279..10142292, -
2.39e-66FFCP PHASE2:Hg19::chr17:70619903..70619909,+#_2b734a3ac8f80b200306128d02b9bd33p@chr17:70619903..70619909, +
2.39e-66FFCP PHASE1:Hg19::chr13:97775112..97775117,+#_2b734a3ac8f80b200306128d02b9bd33p@chr13:97775112..97775117, +
2.39e-66FFCP PHASE1:Hg19::chr10:122521149..122521164,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122521149..122521164, +
2.39e-66FFCP PHASE1:Hg19::chr2:29220301..29220308,+#_2b734a3ac8f80b200306128d02b9bd33p@chr2:29220301..29220308, +
2.39e-66FFCP PHASE2:Hg19::chr10:122520854..122520858,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122520854..122520858, +
2.39e-66FFCP PHASE1:Hg19::chr2:9324969..9324972,-#_2b734a3ac8f80b200306128d02b9bd33p@chr2:9324969..9324972, -
2.39e-66FFCP PHASE2:Hg19::chr9:130913176..130913179,+#_2b734a3ac8f80b200306128d02b9bd33p@chr9:130913176..130913179, +
2.39e-66FFCP PHASE2:Hg19::chr15:42186200..42186205,-#_2b734a3ac8f80b200306128d02b9bd33p3@SPTBN5
2.39e-66FFCP PHASE1:Hg19::chr20:61298207..61298221,-#_2b734a3ac8f80b200306128d02b9bd33p2@ENST00000411824
2.39e-66FFCP PHASE2:Hg19::chr20:61316967..61316974,-#_2b734a3ac8f80b200306128d02b9bd33p@chr20:61316967..61316974, -
2.39e-66FFCP PHASE2:Hg19::chr5:167545165..167545170,+#_2b734a3ac8f80b200306128d02b9bd33p61@ODZ2
2.39e-66FFCP PHASE2:Hg19::chr22:49239060..49239068,+#_2b734a3ac8f80b200306128d02b9bd33p@chr22:49239060..49239068, +
2.39e-66FFCP PHASE2:Hg19::chr10:122910650..122910656,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:122910650..122910656, +
2.39e-66FFCP PHASE2:Hg19::chr10:29217837..29217846,+#_2b734a3ac8f80b200306128d02b9bd33p@chr10:29217837..29217846, +

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