CL:0002306: Difference between revisions

Latest revision as of 16:41, 12 September 2014

Name:

epithelial cell of proximal tubule

Namespace:

FANTOM

Definition:

"An epithelial cell of the proximal tubule of the kidney." [GOC:tfm, ISBN:1-4160-2328-3]

Xrefs:

Expandlinks:

Synonyms:

"kidney proximal tubule epithelial cell" EXACT []

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0000239(brush border epithelial cell),CL:0002078(meso-epithelial cell),CL:1000615(kidney cortex tubule cell)
part_of:	UBERON:0004134(proximal tubule)

Children

derives from:	FF:0000155 (human renal proximal tubular epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)

Mouse (Mus musculus)

11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002306 (epithelial cell of proximal tubule), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
8.98e-131	FFCP PHASE1:Hg19::chr5:167718782..167718785,+	p10@WWC1
8.98e-131	FFCP PHASE2:Hg19::chr5:167718782..167718785,+	p10@WWC1
1.01e-74	FFCP PHASE1:Hg19::chr3:149260147..149260154,-	p39@WWTR1
1.01e-74	FFCP PHASE2:Hg19::chr3:149260147..149260154,-	p39@WWTR1
1.24e-73	FFCP PHASE2:Hg19::chr17:46679250..46679298,+	p1@ENST00000491264
1.24e-73	FFCP PHASE1:Hg19::chr17:46679250..46679298,+	p1@ENST00000491264
2.39e-66	FFCP PHASE1:Hg19::chr16:62055187..62055188,+	p@chr16:62055187..62055188, +
2.39e-66	FFCP PHASE2:Hg19::chr16:61687533..61687551,-	p@chr16:61687533..61687551, -
2.39e-66	FFCP PHASE1:Hg19::chr3:123667850..123667851,+	p@chr3:123667850..123667851, +
2.39e-66	FFCP PHASE2:Hg19::chr16:62055187..62055188,+	p@chr16:62055187..62055188, +
2.39e-66	FFCP PHASE1:Hg19::chr8:6614884..6614885,+	p@chr8:6614884..6614885, +
2.39e-66	FFCP PHASE2:Hg19::chr3:123667850..123667851,+	p@chr3:123667850..123667851, +
2.39e-66	FFCP PHASE1:Hg19::chr16:61687533..61687551,-	p@chr16:61687533..61687551, -
2.39e-66	FFCP PHASE2:Hg19::chr8:6614884..6614885,+	p@chr8:6614884..6614885, +
1.22e-59	FFCP PHASE1:Hg19::chr15:66420804..66420837,-	p4@MEGF11
1.22e-59	FFCP PHASE2:Hg19::chr15:66420804..66420837,-	p4@MEGF11
3.75e-53	FFCP PHASE2:Hg19::chr9:114828174..114828179,+	p@chr9:114828174..114828179, +
3.75e-53	FFCP PHASE1:Hg19::chr9:114828174..114828179,+	p@chr9:114828174..114828179, +
1.65e-46	FFCP PHASE1:Hg19::chr7:140227349..140227360,-	p@chr7:140227349..140227360, -
1.65e-46	FFCP PHASE2:Hg19::chr7:140227349..140227360,-	p@chr7:140227349..140227360, -
7.81e-45	FFCP PHASE2:Hg19::chr6:30890373..30890381,+	p9@VARS2
7.81e-45	FFCP PHASE1:Hg19::chr6:30890373..30890381,+	p9@VARS2
6.91e-39	FFCP PHASE1:Hg19::chr6:30890456..30890482,+	p11@VARS2
6.91e-39	FFCP PHASE2:Hg19::chr6:30890456..30890482,+	p11@VARS2
1.49e-38	FFCP PHASE2:Hg19::chr11:33718564..33718585,-	p1@ENST00000534431
1.49e-38	FFCP PHASE1:Hg19::chr11:33718564..33718585,-	p1@ENST00000534431
2.64e-38	FFCP PHASE1:Hg19::chr7:53466339..53466356,-	p@chr7:53466339..53466356, -
2.64e-38	FFCP PHASE2:Hg19::chr7:53466339..53466356,-	p@chr7:53466339..53466356, -
3.48e-38	FFCP PHASE1:Hg19::chr17:18160552..18160565,-	p@chr17:18160552..18160565, -
3.48e-38	FFCP PHASE2:Hg19::chr17:18160552..18160565,-	p@chr17:18160552..18160565, -
3.86e-38	FFCP PHASE1:Hg19::chr3:190105820..190105829,+	p3@CLDN16
3.86e-38	FFCP PHASE2:Hg19::chr3:190105820..190105829,+	p3@CLDN16
5.76e-38	FFCP PHASE1:Hg19::chr1:1100457..1100470,+	p@chr1:1100457..1100470, +
5.76e-38	FFCP PHASE2:Hg19::chr1:1100457..1100470,+	p@chr1:1100457..1100470, +
2.08e-36	FFCP PHASE1:Hg19::chr9:133986782..133986794,+	p4@AIF1L
2.08e-36	FFCP PHASE2:Hg19::chr9:133986782..133986794,+	p4@AIF1L
2.25e-35	FFCP PHASE2:Hg19::chr10:102495147..102495159,+	p4@PAX2
2.25e-35	FFCP PHASE1:Hg19::chr10:102495147..102495159,+	p4@PAX2
3.2e-35	FFCP PHASE1:Hg19::chr12:6485243..6485254,-	p18@SCNN1A
3.2e-35	FFCP PHASE2:Hg19::chr12:6485243..6485254,-	p18@SCNN1A
5.96e-34	FFCP PHASE1:Hg19::chr6:31023284..31023287,-	p@chr6:31023284..31023287, -
5.96e-34	FFCP PHASE2:Hg19::chr6:31023284..31023287,-	p@chr6:31023284..31023287, -
2.09e-33	FFCP PHASE1:Hg19::chr2:113994209..113994222,-	p11@PAX8
2.09e-33	FFCP PHASE2:Hg19::chr2:113994209..113994222,-	p11@PAX8
1.41e-32	FFCP PHASE2:Hg19::chr14:57960456..57960478,-	p2@C14orf105
1.41e-32	FFCP PHASE1:Hg19::chr14:57960456..57960478,-	p2@C14orf105
2.17e-32	FFCP PHASE1:Hg19::chr3:190105935..190105966,+	p1@CLDN16
2.17e-32	FFCP PHASE2:Hg19::chr3:190105935..190105966,+	p1@CLDN16
3.1e-30	FFCP PHASE1:Hg19::chr3:112127710..112127713,-	p@chr3:112127710..112127713, -
3.1e-30	FFCP PHASE2:Hg19::chr3:112127710..112127713,-	p@chr3:112127710..112127713, -
4.84e-30	FFCP PHASE2:Hg19::chr20:49347516..49347535,-	p@chr20:49347516..49347535, -
4.84e-30	FFCP PHASE1:Hg19::chr20:49347516..49347535,-	p@chr20:49347516..49347535, -
6.17e-30	FFCP PHASE2:Hg19::chr6:30890348..30890372,+	p5@VARS2
6.17e-30	FFCP PHASE1:Hg19::chr6:30890348..30890372,+	p5@VARS2
8.26e-30	FFCP PHASE2:Hg19::chr9:133986807..133986821,+	p3@AIF1L
8.26e-30	FFCP PHASE1:Hg19::chr9:133986807..133986821,+	p3@AIF1L
8.74e-30	FFCP PHASE2:Hg19::chr3:190106002..190106011,+	p4@CLDN16
8.74e-30	FFCP PHASE1:Hg19::chr3:190106002..190106011,+	p4@CLDN16
4.28e-29	FFCP PHASE2:Hg19::chr7:7606139..7606151,-	p@chr7:7606139..7606151, -
4.28e-29	FFCP PHASE1:Hg19::chr7:7606139..7606151,-	p@chr7:7606139..7606151, -
5.09e-29	FFCP PHASE1:Hg19::chr6:30890599..30890626,+	p4@VARS2
5.09e-29	FFCP PHASE2:Hg19::chr6:30890599..30890626,+	p4@VARS2
4.74e-28	FFCP PHASE2:Hg19::chr11:117695245..117695263,-	p7@FXYD2
4.74e-28	FFCP PHASE1:Hg19::chr11:117695245..117695263,-	p7@FXYD2
2.38e-27	FFCP PHASE2:Hg19::chr11:117695233..117695244,-	p11@FXYD2
2.38e-27	FFCP PHASE1:Hg19::chr11:117695233..117695244,-	p11@FXYD2
3.11e-27	FFCP PHASE2:Hg19::chr10:91043499..91043510,+	p2@ENST00000354541
3.11e-27	FFCP PHASE1:Hg19::chr10:91043499..91043510,+	p2@ENST00000354541
5.07e-27	FFCP PHASE1:Hg19::chr1:17519128..17519138,+	p@chr1:17519128..17519138, +
5.07e-27	FFCP PHASE2:Hg19::chr1:17519128..17519138,+	p@chr1:17519128..17519138, +
1.22e-26	FFCP PHASE2:Hg19::chr18:77104123..77104150,+	p5@ATP9B
1.22e-26	FFCP PHASE1:Hg19::chr18:77104123..77104150,+	p5@ATP9B
2.01e-25	FFCP PHASE1:Hg19::chr7:98453821..98453843,-	p@chr7:98453821..98453843, -
2.01e-25	FFCP PHASE2:Hg19::chr7:98453821..98453843,-	p@chr7:98453821..98453843, -
4.31e-25	FFCP PHASE1:Hg19::chr2:167467988..167467993,-	p@chr2:167467988..167467993, -
4.31e-25	FFCP PHASE1:Hg19::chr9:133986740..133986750,+	p7@AIF1L
4.31e-25	FFCP PHASE2:Hg19::chr2:167467988..167467993,-	p@chr2:167467988..167467993, -
4.31e-25	FFCP PHASE2:Hg19::chr9:133986740..133986750,+	p7@AIF1L
5.5e-25	FFCP PHASE2:Hg19::chr2:189157368..189157381,-	p@chr2:189157368..189157381, -
5.5e-25	FFCP PHASE1:Hg19::chr2:189157368..189157381,-	p@chr2:189157368..189157381, -
7.93e-25	FFCP PHASE2:Hg19::chr9:119741711..119741743,-	p@chr9:119741711..119741743, -
7.93e-25	FFCP PHASE1:Hg19::chr9:119741711..119741743,-	p@chr9:119741711..119741743, -
8.07e-25	FFCP PHASE1:Hg19::chr19:51472081..51472088,-	p8@KLK6
8.07e-25	FFCP PHASE2:Hg19::chr19:51472081..51472088,-	p8@KLK6
1.21e-24	FFCP PHASE2:Hg19::chr7:27219833..27219845,-	p7@HOXA10
1.21e-24	FFCP PHASE1:Hg19::chr7:27219833..27219845,-	p7@HOXA10
1.29e-24	FFCP PHASE1:Hg19::chr20:6034241..6034256,-	p@chr20:6034241..6034256, -
1.29e-24	FFCP PHASE2:Hg19::chr20:6034241..6034256,-	p@chr20:6034241..6034256, -
7.91e-24	FFCP PHASE2:Hg19::chr11:117695415..117695426,-	p3@FXYD2
7.91e-24	FFCP PHASE1:Hg19::chr21:41029235..41029269,+	p2@B3GALT5
7.91e-24	FFCP PHASE1:Hg19::chr11:117695415..117695426,-	p3@FXYD2
7.91e-24	FFCP PHASE2:Hg19::chr21:41029235..41029269,+	p2@B3GALT5
9.99e-24	FFCP PHASE1:Hg19::chr18:3456189..3456200,+	p@chr18:3456189..3456200, +
9.99e-24	FFCP PHASE2:Hg19::chr18:3456189..3456200,+	p@chr18:3456189..3456200, +
9.99e-24	FFCP PHASE2:Hg19::chr10:102505954..102505973,+	p3@PAX2
9.99e-24	FFCP PHASE1:Hg19::chr10:102505954..102505973,+	p3@PAX2
3.27e-23	FFCP PHASE2:Hg19::chr12:6484832..6484841,+	p@chr12:6484832..6484841, +
3.27e-23	FFCP PHASE1:Hg19::chr12:6484832..6484841,+	p@chr12:6484832..6484841, +
3.29e-23	FFCP PHASE1:Hg19::chr3:43532224..43532252,-	p@chr3:43532224..43532252, -
3.29e-23	FFCP PHASE2:Hg19::chr3:43532224..43532252,-	p@chr3:43532224..43532252, -

Showing 1 to 100 of 100 entries

@@ Line 13: / Line 13: @@
 |located_in=
 |name=epithelial cell of proximal tubule
-|namespace=cell
+|namespace=FANTOM
 |obo_creation_date=
 |part_of=UBERON:0004134

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CL:0002306: Difference between revisions

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Latest revision as of 16:41, 12 September 2014

Ontology Tree: Loaded from BioPortal

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