CL:0002372: Difference between revisions

Latest revision as of 16:42, 12 September 2014

Name:	myotube
Namespace:	FANTOM
Definition:	"A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse." [GOC:tfm, ISBN:0323052908]
Synonyms:	"myotubule" EXACT [] "single cell sarcomere" EXACT [] "skeletal muscle fiber" EXACT []
Alt_id:	CL:0000369
Created by:	tmeehan
Creation date:	2010-09-24T01:13:01Z

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0000228(multinucleate cell),CL:0000737(striated muscle cell)
develops_from:	CL:0000515(skeletal muscle myoblast)

Children

is a:	FF:0000163 (myotubule derived from skeletal muscle cells)
derives from:	FF:0104975 (human myotube cell sample),FF:0200006 (myoblast differentiation to myotubes, control sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

13469-144I4 (Myoblast differentiation to myotubes)
13470-144I5 (Myoblast differentiation to myotubes)
13471-144I6 (Myoblast differentiation to myotubes)
13472-144I7 (Myoblast differentiation to myotubes)
13473-144I8 (Myoblast differentiation to myotubes)
13474-144I9 (Myoblast differentiation to myotubes)
13475-145A1 (Myoblast differentiation to myotubes)
13476-145A2 (Myoblast differentiation to myotubes)
13477-145A3 (Myoblast differentiation to myotubes)
13478-145A4 (Myoblast differentiation to myotubes)

... further results Mouse (Mus musculus)

13469-144I4 (Myoblast differentiation to myotubes)
13470-144I5 (Myoblast differentiation to myotubes)
13471-144I6 (Myoblast differentiation to myotubes)
13472-144I7 (Myoblast differentiation to myotubes)
13473-144I8 (Myoblast differentiation to myotubes)
13474-144I9 (Myoblast differentiation to myotubes)
13475-145A1 (Myoblast differentiation to myotubes)
13476-145A2 (Myoblast differentiation to myotubes)
13477-145A3 (Myoblast differentiation to myotubes)
13478-145A4 (Myoblast differentiation to myotubes)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002372 (myotube), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
9.37e-99	FFCP PHASE1:Hg19::chr8:106331633..106331642,+	p15@ZFPM2
9.37e-99	FFCP PHASE2:Hg19::chr8:106331633..106331642,+	p15@ZFPM2
2.55e-98	FFCP PHASE2:Hg19::chr13:43938419..43938424,-	p@chr13:43938419..43938424, -
2.55e-98	FFCP PHASE2:Hg19::chr4:26143606..26143611,+	p@chr4:26143606..26143611, +
2.55e-98	FFCP PHASE2:Hg19::chr1:186166946..186166955,-	p@chr1:186166946..186166955, -
2.55e-98	FFCP PHASE1:Hg19::chr12:54379011..54379016,+	p15@HOXC10
2.55e-98	FFCP PHASE1:Hg19::chr9:21496498..21496503,-	p@chr9:21496498..21496503, -
2.55e-98	FFCP PHASE1:Hg19::chr4:130278144..130278146,+	p@chr4:130278144..130278146, +
2.55e-98	FFCP PHASE2:Hg19::chr9:21496498..21496503,-	p@chr9:21496498..21496503, -
2.55e-98	FFCP PHASE2:Hg19::chr4:130278144..130278146,+	p@chr4:130278144..130278146, +
2.55e-98	FFCP PHASE1:Hg19::chr4:26143606..26143611,+	p@chr4:26143606..26143611, +
2.55e-98	FFCP PHASE2:Hg19::chr12:54379011..54379016,+	p15@HOXC10
2.55e-98	FFCP PHASE1:Hg19::chr13:43938419..43938424,-	p@chr13:43938419..43938424, -
2.55e-98	FFCP PHASE1:Hg19::chr1:186166946..186166955,-	p@chr1:186166946..186166955, -
1.23e-66	FFCP PHASE2:Hg19::chr2:224839996..224840004,-	p46@SERPINE2
1.23e-66	FFCP PHASE1:Hg19::chr7:112635723..112635728,-	p4@ENST00000451962
1.23e-66	FFCP PHASE2:Hg19::chr7:112635723..112635728,-	p4@ENST00000451962
1.23e-66	FFCP PHASE1:Hg19::chr2:224839996..224840004,-	p46@SERPINE2
2.39e-66	FFCP PHASE1:Hg19::chr18:67872642..67872645,-	p@chr18:67872642..67872645, -
2.39e-66	FFCP PHASE1:Hg19::chr13:99963626..99963628,-	p@chr13:99963626..99963628, -
2.39e-66	FFCP PHASE1:Hg19::chr5:52288160..52288176,+	p@chr5:52288160..52288176, +
2.39e-66	FFCP PHASE1:Hg19::chr4:188050642..188050645,+	p@chr4:188050642..188050645, +
2.39e-66	FFCP PHASE2:Hg19::chr18:67872642..67872645,-	p@chr18:67872642..67872645, -
2.39e-66	FFCP PHASE2:Hg19::chr13:99963626..99963628,-	p@chr13:99963626..99963628, -
2.39e-66	FFCP PHASE2:Hg19::chr5:52288160..52288176,+	p@chr5:52288160..52288176, +
2.39e-66	FFCP PHASE2:Hg19::chr4:188050642..188050645,+	p@chr4:188050642..188050645, +
4.66e-66	FFCP PHASE2:Hg19::chr11:92616200..92616202,+	p4@FAT3
4.66e-66	FFCP PHASE2:Hg19::chr16:2811988..2811995,+	p@chr16:2811988..2811995, +
4.66e-66	FFCP PHASE2:Hg19::chr4:86954525..86954527,+	p@chr4:86954525..86954527, +
4.66e-66	FFCP PHASE1:Hg19::chr7:7222449..7222458,+	p10@C1GALT1
4.66e-66	FFCP PHASE1:Hg19::chr11:92616200..92616202,+	p4@FAT3
4.66e-66	FFCP PHASE2:Hg19::chr7:7222449..7222458,+	p10@C1GALT1
4.66e-66	FFCP PHASE1:Hg19::chr16:2811988..2811995,+	p@chr16:2811988..2811995, +
4.66e-66	FFCP PHASE1:Hg19::chr4:86954525..86954527,+	p@chr4:86954525..86954527, +
2.42e-50	FFCP PHASE1:Hg19::chr18:19769123..19769149,+	p@chr18:19769123..19769149, +
2.42e-50	FFCP PHASE2:Hg19::chr18:19769123..19769149,+	p@chr18:19769123..19769149, +
2.42e-50	FFCP PHASE1:Hg19::chr2:30865226..30865229,+	p17@LCLAT1
2.42e-50	FFCP PHASE1:Hg19::chr11:64774372..64774383,-	p@chr11:64774372..64774383, -
2.42e-50	FFCP PHASE1:Hg19::chr1:78353898..78353908,+	p24@NEXN
2.42e-50	FFCP PHASE2:Hg19::chr1:78353898..78353908,+	p24@NEXN
2.42e-50	FFCP PHASE1:Hg19::chr7:91874538..91874551,-	p13@KRIT1
2.42e-50	FFCP PHASE1:Hg19::chr15:80352456..80352465,+	p10@ZFAND6
2.42e-50	FFCP PHASE2:Hg19::chr2:30865226..30865229,+	p17@LCLAT1
2.42e-50	FFCP PHASE2:Hg19::chr11:64774372..64774383,-	p@chr11:64774372..64774383, -
2.42e-50	FFCP PHASE2:Hg19::chr7:91874538..91874551,-	p13@KRIT1
2.42e-50	FFCP PHASE2:Hg19::chr15:80352456..80352465,+	p10@ZFAND6
3.99e-50	FFCP PHASE2:Hg19::chr13:26312285..26312294,+	p@chr13:26312285..26312294, +
3.99e-50	FFCP PHASE1:Hg19::chr3:114061988..114061990,-	p@chr3:114061988..114061990, -
3.99e-50	FFCP PHASE2:Hg19::chr4:110434870..110434880,+	p@chr4:110434870..110434880, +
3.99e-50	FFCP PHASE2:Hg19::chr4:6592942..6592947,-	p@chr4:6592942..6592947, -
3.99e-50	FFCP PHASE2:Hg19::chr12:89919893..89919905,-	p6@POC1B-GALNT4
3.99e-50	FFCP PHASE2:Hg19::chr8:107561486..107561489,+	p@chr8:107561486..107561489, +
3.99e-50	FFCP PHASE2:Hg19::chr7:7595050..7595057,-	p@chr7:7595050..7595057, -
3.99e-50	FFCP PHASE2:Hg19::chr9:114720368..114720377,-	p@chr9:114720368..114720377, -
3.99e-50	FFCP PHASE2:Hg19::chr11:117152220..117152232,+	p11@RNF214
3.99e-50	FFCP PHASE2:Hg19::chr3:114061988..114061990,-	p@chr3:114061988..114061990, -
3.99e-50	FFCP PHASE1:Hg19::chr5:131892954..131892969,+	p9@RAD50
3.99e-50	FFCP PHASE1:Hg19::chrX:69722913..69722915,+	p@chrX:69722913..69722915, +
3.99e-50	FFCP PHASE1:Hg19::chr18:55922965..55922972,+	p@chr18:55922965..55922972, +
3.99e-50	FFCP PHASE1:Hg19::chr4:6592942..6592947,-	p@chr4:6592942..6592947, -
3.99e-50	FFCP PHASE2:Hg19::chr5:131892954..131892969,+	p9@RAD50
3.99e-50	FFCP PHASE1:Hg19::chr13:26312285..26312294,+	p@chr13:26312285..26312294, +
3.99e-50	FFCP PHASE1:Hg19::chr8:107561486..107561489,+	p@chr8:107561486..107561489, +
3.99e-50	FFCP PHASE1:Hg19::chr7:7595050..7595057,-	p@chr7:7595050..7595057, -
3.99e-50	FFCP PHASE2:Hg19::chrX:69722913..69722915,+	p@chrX:69722913..69722915, +
3.99e-50	FFCP PHASE1:Hg19::chr4:110434870..110434880,+	p@chr4:110434870..110434880, +
3.99e-50	FFCP PHASE1:Hg19::chr11:117152220..117152232,+	p11@RNF214
3.99e-50	FFCP PHASE1:Hg19::chr12:89919893..89919905,-	p6@POC1B-GALNT4
3.99e-50	FFCP PHASE2:Hg19::chr18:55922965..55922972,+	p@chr18:55922965..55922972, +
3.99e-50	FFCP PHASE1:Hg19::chr9:114720368..114720377,-	p@chr9:114720368..114720377, -
6.58e-50	FFCP PHASE2:Hg19::chr15:35796430..35796456,-	p@chr15:35796430..35796456, -
6.58e-50	FFCP PHASE2:Hg19::chr12:112451000..112451011,-	p7@TMEM116
6.58e-50	FFCP PHASE1:Hg19::chr7:63560612..63560634,+	p1@GUSBP6
6.58e-50	FFCP PHASE2:Hg19::chr11:123362263..123362276,+	p@chr11:123362263..123362276, +
6.58e-50	FFCP PHASE2:Hg19::chr7:63560612..63560634,+	p1@GUSBP6
6.58e-50	FFCP PHASE1:Hg19::chr21:46420365..46420376,+	p@chr21:46420365..46420376, +
6.58e-50	FFCP PHASE1:Hg19::chr12:112451000..112451011,-	p7@TMEM116
6.58e-50	FFCP PHASE1:Hg19::chr15:35796430..35796456,-	p@chr15:35796430..35796456, -
6.58e-50	FFCP PHASE2:Hg19::chr21:46420365..46420376,+	p@chr21:46420365..46420376, +
6.58e-50	FFCP PHASE1:Hg19::chr11:123362263..123362276,+	p@chr11:123362263..123362276, +
9.91e-41	FFCP PHASE2:Hg19::chr21:35340759..35340770,-	p@chr21:35340759..35340770, -
9.91e-41	FFCP PHASE1:Hg19::chr12:31882130..31882150,-	p4@AMN1
9.91e-41	FFCP PHASE2:Hg19::chr12:31882130..31882150,-	p4@AMN1
9.91e-41	FFCP PHASE1:Hg19::chr3:51345332..51345335,+	p@chr3:51345332..51345335, +
9.91e-41	FFCP PHASE1:Hg19::chr21:35340759..35340770,-	p@chr21:35340759..35340770, -
9.91e-41	FFCP PHASE2:Hg19::chr3:51345332..51345335,+	p@chr3:51345332..51345335, +
1.48e-40	FFCP PHASE1:Hg19::chr19:50529329..50529340,+	p6@ZNF473
1.48e-40	FFCP PHASE1:Hg19::chr4:187526365..187526370,-	p@chr4:187526365..187526370, -
1.48e-40	FFCP PHASE2:Hg19::chr7:92213359..92213360,-	p@chr7:92213359..92213360, -
1.48e-40	FFCP PHASE2:Hg19::chr3:173650372..173650378,-	p@chr3:173650372..173650378, -
1.48e-40	FFCP PHASE1:Hg19::chr11:35110037..35110046,+	p@chr11:35110037..35110046, +
1.48e-40	FFCP PHASE2:Hg19::chr19:50529329..50529340,+	p6@ZNF473
1.48e-40	FFCP PHASE1:Hg19::chr15:41786087..41786090,+	p8@ITPKA
1.48e-40	FFCP PHASE1:Hg19::chr4:28866276..28866280,+	p@chr4:28866276..28866280, +
1.48e-40	FFCP PHASE2:Hg19::chr4:187526365..187526370,-	p@chr4:187526365..187526370, -
1.48e-40	FFCP PHASE2:Hg19::chr11:35110037..35110046,+	p@chr11:35110037..35110046, +
1.48e-40	FFCP PHASE2:Hg19::chr15:41786087..41786090,+	p8@ITPKA
1.48e-40	FFCP PHASE1:Hg19::chr7:92213359..92213360,-	p@chr7:92213359..92213360, -
1.48e-40	FFCP PHASE2:Hg19::chr4:28866276..28866280,+	p@chr4:28866276..28866280, +
1.48e-40	FFCP PHASE1:Hg19::chr3:173650372..173650378,-	p@chr3:173650372..173650378, -

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{CL
-|id=CL:0002372
+|alt_id=CL:0000369
-|name=myotube
-|namespace=cell
-|def="A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse." [GOC:tfm, ISBN:0323052908]
-|xref=
-|is_a=CL:0000188;;CL:0000228;;CL:0000737
-|synonym="myotubule" EXACT [];;"single cell sarcomere" EXACT [];;"skeletal muscle fiber" EXACT []
 |comment=
-|alt_id=CL:0000369
-|disjoint_from=
-|union_of=
 |created_by=tmeehan
-|obo_creation_date=2010-09-24T01:13:01Z
+|def="A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse." [GOC:tfm, ISBN:0323052908]
-|subset=
 |derives_from=
-|develops_from=
+|develops_from=CL:0000515
+|disjoint_from=
 |has_quality=
+|id=CL:0002372
+|is_a=CL:0000228 ;;CL:0000737
+|is_obsolete=
 |located_in=
+|name=myotube
+|namespace=FANTOM
+|obo_creation_date=2010-09-24T01:13:01Z
 |part_of=
+|preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
-|is_obsolete=
+|subset=
-|preceded_by=
+|synonym="myotubule" EXACT [];;"single cell sarcomere" EXACT [];;"skeletal muscle fiber" EXACT []
+|union_of=
+|xref=
 }}

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Latest revision as of 16:42, 12 September 2014

Ontology Tree: Loaded from BioPortal

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