CL:0002548: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="A fibroblast that is part of the heart." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002548 | |||
|is_a=CL:0000057 ;;CL:0002494 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=cardiac fibroblast | ||
|namespace=FANTOM | |||
|obo_creation_date=2011-02-28T04:57:44Z | |||
|part_of=UBERON:0000948 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:44, 12 September 2014
| Name: | cardiac fibroblast |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A fibroblast that is part of the heart." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-02-28T04:57:44Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000057(fibroblast),CL:0002494(cardiocyte) |
|---|---|
| part_of: | UBERON:0000948(heart) |
Children
| derives from: | FF:0000059 (human cardiac fibroblast sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11268-116G8 (Fibroblast - Cardiac, donor1)
- 11345-117G4 (Fibroblast - Cardiac, donor2)
- 11417-118F4 (Fibroblast - Cardiac, donor3)
- 11452-119A3 (Fibroblast - Cardiac, donor4)
- 11456-119A7 (Fibroblast - Cardiac, donor5)
- 11460-119B2 (Fibroblast - Cardiac, donor6)
Mouse (Mus musculus)
- 11268-116G8 (Fibroblast - Cardiac, donor1)
- 11345-117G4 (Fibroblast - Cardiac, donor2)
- 11417-118F4 (Fibroblast - Cardiac, donor3)
- 11452-119A3 (Fibroblast - Cardiac, donor4)
- 11456-119A7 (Fibroblast - Cardiac, donor5)
- 11460-119B2 (Fibroblast - Cardiac, donor6)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002548 (cardiac fibroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-66 | FFCP PHASE1:Hg19::chr4:105808128..105808134,-#_515bb19c8207030b51d4804433c3c1d7 | p1@ENST00000474399 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr4:105808128..105808134,-#_515bb19c8207030b51d4804433c3c1d7 | p1@ENST00000474399 |
| 1.52e-44 | FFCP PHASE1:Hg19::chr3:111579496..111579506,+#_105f5847d863e5ff3a855ec5417fcfec | p@chr3:111579496..111579506, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr3:111579496..111579506,+#_105f5847d863e5ff3a855ec5417fcfec | p@chr3:111579496..111579506, + |
| 9.96e-43 | FFCP PHASE2:Hg19::chr2:102758335..102758346,+#_958075c667c946245f2d2b4db6690f67 | p30@IL1R1 |
| 9.96e-43 | FFCP PHASE1:Hg19::chr2:102758335..102758346,+#_958075c667c946245f2d2b4db6690f67 | p30@IL1R1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:35293740..35293741,-#_05e7f969a52532a515933b1a78de51ac | p4@TBX20 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:35293740..35293741,-#_05e7f969a52532a515933b1a78de51ac | p4@TBX20 |
| 1.64e-33 | FFCP PHASE1:Hg19::chr14:61929948..61929975,+#_419bb88a41a665ba76268bb1f3f48445 | p20@PRKCH |
| 1.64e-33 | FFCP PHASE2:Hg19::chr14:61929948..61929975,+#_419bb88a41a665ba76268bb1f3f48445 | p20@PRKCH |
| 2.42e-29 | FFCP PHASE2:Hg19::chr11:123340107..123340127,+#_16a2a48ad4d7b90d16f5ec002e1eafc8 | p@chr11:123340107..123340127, + |
| 2.42e-29 | FFCP PHASE1:Hg19::chr11:123340107..123340127,+#_16a2a48ad4d7b90d16f5ec002e1eafc8 | p@chr11:123340107..123340127, + |
| 1.12e-27 | FFCP PHASE1:Hg19::chr18:10979606..10979617,-#_0b442de69cb3cebfb2099fc49a746811 | p@chr18:10979606..10979617, - |
| 1.12e-27 | FFCP PHASE2:Hg19::chr18:10979606..10979617,-#_0b442de69cb3cebfb2099fc49a746811 | p@chr18:10979606..10979617, - |
| 1.61e-27 | FFCP PHASE1:Hg19::chr9:13707925..13707941,+#_51d9c9ef2ee055bf696e973813521c5b | p@chr9:13707925..13707941, + |
| 1.61e-27 | FFCP PHASE2:Hg19::chr9:13707925..13707941,+#_51d9c9ef2ee055bf696e973813521c5b | p@chr9:13707925..13707941, + |
| 4.06e-27 | FFCP PHASE1:Hg19::chr5:82937248..82937251,-#_6658cbf93eb64cc05a4ffb6b0e11509f | p9@HAPLN1 |
| 4.06e-27 | FFCP PHASE2:Hg19::chr5:82937248..82937251,-#_6658cbf93eb64cc05a4ffb6b0e11509f | p9@HAPLN1 |
| 1.97e-25 | FFCP PHASE2:Hg19::chr2:169938264..169938276,+#_2b453e9e9f485e99d931f95630c7b8b3 | p9@DHRS9 |
| 1.97e-25 | FFCP PHASE1:Hg19::chr2:169938264..169938276,+#_2b453e9e9f485e99d931f95630c7b8b3 | p9@DHRS9 |
| 2.75e-25 | FFCP PHASE2:Hg19::chr12:105258734..105258750,+#_6676aa19a1bb58dad355c0ffaa51e8a8 | p@chr12:105258734..105258750, + |
| 2.75e-25 | FFCP PHASE1:Hg19::chr12:105258734..105258750,+#_6676aa19a1bb58dad355c0ffaa51e8a8 | p@chr12:105258734..105258750, + |
| 6.06e-25 | FFCP PHASE1:Hg19::chr2:102720900..102720911,+#_5f4ff02560f1f34dff60782013f200fd | p20@IL1R1 |
| 6.06e-25 | FFCP PHASE2:Hg19::chr2:102720900..102720911,+#_5f4ff02560f1f34dff60782013f200fd | p20@IL1R1 |
| 7.0e-25 | FFCP PHASE1:Hg19::chr1:198189921..198189940,+#_6e343aedb658dfed65e910bb7021b48c | p7@NEK7 |
| 7.0e-25 | FFCP PHASE2:Hg19::chr1:198189921..198189940,+#_6e343aedb658dfed65e910bb7021b48c | p7@NEK7 |
| 1.02e-23 | FFCP PHASE2:Hg19::chr2:169938317..169938331,+#_afb75ad7679bce98db44e42597cbbe21 | p3@DHRS9 |
| 1.02e-23 | FFCP PHASE1:Hg19::chr2:169938317..169938331,+#_afb75ad7679bce98db44e42597cbbe21 | p3@DHRS9 |
| 1.57e-23 | FFCP PHASE1:Hg19::chr1:218518942..218518953,+#_02523a1f05e6631fbddf5c18ec775e20 | p28@TGFB2 |
| 1.57e-23 | FFCP PHASE2:Hg19::chr1:218518942..218518953,+#_02523a1f05e6631fbddf5c18ec775e20 | p28@TGFB2 |
| 8.91e-21 | FFCP PHASE2:Hg19::chr7:81146338..81146341,-#_71ed1c75d6f3e1a7e20f3a2ff221567f | p@chr7:81146338..81146341, - |
| 8.91e-21 | FFCP PHASE1:Hg19::chr7:81146338..81146341,-#_71ed1c75d6f3e1a7e20f3a2ff221567f | p@chr7:81146338..81146341, - |
| 2.01e-20 | FFCP PHASE2:Hg19::chr7:124633086..124633101,+#_5242ca50a8016854c2cdf6806a6c0c88 | p2@ENST00000415715 |
| 2.01e-20 | FFCP PHASE1:Hg19::chr7:124633086..124633101,+#_5242ca50a8016854c2cdf6806a6c0c88 | p2@ENST00000415715 |
| 8.63e-20 | FFCP PHASE1:Hg19::chr5:172659847..172659850,-#_ad001ff34db062a35c3cbe59b207a3b6 | p@chr5:172659847..172659850, - |
| 8.63e-20 | FFCP PHASE2:Hg19::chr5:172659847..172659850,-#_ad001ff34db062a35c3cbe59b207a3b6 | p@chr5:172659847..172659850, - |
| 9.49e-20 | FFCP PHASE1:Hg19::chr3:194131023..194131024,-#_6a6c2fe6c9fac19088ef0b5b07dc2e30 | p@chr3:194131023..194131024, - |
| 9.49e-20 | FFCP PHASE2:Hg19::chr3:194131023..194131024,-#_6a6c2fe6c9fac19088ef0b5b07dc2e30 | p@chr3:194131023..194131024, - |
| 1.04e-19 | FFCP PHASE1:Hg19::chr14:24740459..24740462,+#_ed917bebd839d689eee4d8e362442a66 | p3@AB593166 |
| 1.04e-19 | FFCP PHASE2:Hg19::chr14:24740459..24740462,+#_ed917bebd839d689eee4d8e362442a66 | p3@AB593166 |
| 1.26e-19 | FFCP PHASE1:Hg19::chr15:80841630..80841633,-#_30b55ec7fd086b773a580730c9ed2031 | p@chr15:80841630..80841633, - |
| 1.26e-19 | FFCP PHASE2:Hg19::chr15:80841630..80841633,-#_30b55ec7fd086b773a580730c9ed2031 | p@chr15:80841630..80841633, - |
| 5.26e-19 | FFCP PHASE1:Hg19::chr20:30347712..30347751,+#_9ec00b1c76e581c1cf0d8765c498fb25 | p5@TPX2 |
| 5.26e-19 | FFCP PHASE2:Hg19::chr20:30347712..30347751,+#_9ec00b1c76e581c1cf0d8765c498fb25 | p5@TPX2 |
| 1.24e-18 | FFCP PHASE2:Hg19::chr11:103673881..103673894,-#_42f12a54fb34cf57dff254ad5f18979b | p@chr11:103673881..103673894, - |
| 1.24e-18 | FFCP PHASE1:Hg19::chr11:103673881..103673894,-#_42f12a54fb34cf57dff254ad5f18979b | p@chr11:103673881..103673894, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr8:8244121..8244132,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p9@SGK223 |
| 9.07e-18 | FFCP PHASE1:Hg19::chr19:47363167..47363169,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr19:47363167..47363169, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chrX:47895608..47895616,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chrX:47895608..47895616, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr19:47363167..47363169,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr19:47363167..47363169, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr3:111480481..111480482,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr3:111480481..111480482, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr1:208252658..208252675,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr1:208252658..208252675, - |
| 9.07e-18 | FFCP PHASE2:Hg19::chrX:47895608..47895616,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chrX:47895608..47895616, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr3:111480481..111480482,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr3:111480481..111480482, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr1:208252658..208252675,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr1:208252658..208252675, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr15:57860130..57860134,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr15:57860130..57860134, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr13:45965544..45965564,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p4@RCN1P2 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr15:57860130..57860134,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr15:57860130..57860134, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr13:45965544..45965564,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p4@RCN1P2 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr11:68450506..68450518,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr11:68450506..68450518, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr12:78224657..78224661,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p42@NAV3 |
| 9.07e-18 | FFCP PHASE1:Hg19::chr11:68450506..68450518,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr11:68450506..68450518, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr20:6517713..6517716,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr20:6517713..6517716, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr12:78224657..78224661,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p42@NAV3 |
| 9.07e-18 | FFCP PHASE1:Hg19::chr3:78666867..78666875,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p43@ROBO1 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr8:119452230..119452235,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr8:119452230..119452235, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr11:8124893..8124895,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr11:8124893..8124895, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr20:6517713..6517716,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr20:6517713..6517716, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr3:78666867..78666875,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p43@ROBO1 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr13:106251902..106251908,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr13:106251902..106251908, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr8:119452230..119452235,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr8:119452230..119452235, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr3:185826157..185826169,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr3:185826157..185826169, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr11:8124893..8124895,+#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr11:8124893..8124895, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr13:106251902..106251908,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr13:106251902..106251908, - |
| 9.07e-18 | FFCP PHASE2:Hg19::chr3:185826157..185826169,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr3:185826157..185826169, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr4:67292646..67292650,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr4:67292646..67292650, - |
| 9.07e-18 | FFCP PHASE2:Hg19::chr8:8244121..8244132,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p9@SGK223 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr4:67292646..67292650,-#_2017202f3d510cc0a226a9fe2c2c5c3e | p@chr4:67292646..67292650, - |
| 1.44e-17 | FFCP PHASE2:Hg19::chr2:102758378..102758401,+#_1c90ff4949ee5fe10563aad50ffc228e | p31@IL1R1 |
| 1.44e-17 | FFCP PHASE1:Hg19::chr2:102758378..102758401,+#_1c90ff4949ee5fe10563aad50ffc228e | p31@IL1R1 |
| 2.41e-17 | FFCP PHASE2:Hg19::chr22:50553000..50553012,+#_8cfdcce6a7b3e647d0e8ecafcf7c5ae1 | p2@MOV10L1 |
| 2.41e-17 | FFCP PHASE1:Hg19::chr22:50553000..50553012,+#_8cfdcce6a7b3e647d0e8ecafcf7c5ae1 | p2@MOV10L1 |
| 9.36e-17 | FFCP PHASE1:Hg19::chr15:66874502..66874507,+#_48aba1d27a5bf5e27bf648ac5b33e8db | p1@ENST00000558797, p1@uc002aqe.2 |
| 9.36e-17 | FFCP PHASE2:Hg19::chr15:66874502..66874507,+#_48aba1d27a5bf5e27bf648ac5b33e8db | p1@ENST00000558797, p1@uc002aqe.2 |
| 1.6e-16 | FFCP PHASE2:Hg19::chr8:11561453..11561466,+#_9eae41ff1b8fb2367bbdecb26baf964a | p2@GATA4 |
| 1.6e-16 | FFCP PHASE1:Hg19::chr8:11561453..11561466,+#_9eae41ff1b8fb2367bbdecb26baf964a | p2@GATA4 |
| 2.03e-16 | FFCP PHASE1:Hg19::chr13:38171411..38171427,-#_206d9858ca3690b671dc2b85ec242238 | p@chr13:38171411..38171427, - |
| 2.03e-16 | FFCP PHASE2:Hg19::chr13:38171411..38171427,-#_206d9858ca3690b671dc2b85ec242238 | p@chr13:38171411..38171427, - |
| 3.38e-16 | FFCP PHASE1:Hg19::chrX:86773106..86773119,+#_b5cbe2c4e1dc09e6cc2a25689663896b | p5@KLHL4 |
| 3.38e-16 | FFCP PHASE2:Hg19::chrX:86773106..86773119,+#_b5cbe2c4e1dc09e6cc2a25689663896b | p5@KLHL4 |
| 3.43e-16 | FFCP PHASE1:Hg19::chr4:125633260..125633270,-#_cac3cf59421d760f122a541e9c429a96 | p@chr4:125633260..125633270, - |
| 3.43e-16 | FFCP PHASE2:Hg19::chr4:125633260..125633270,-#_cac3cf59421d760f122a541e9c429a96 | p@chr4:125633260..125633270, - |
| 1.22e-15 | FFCP PHASE1:Hg19::chr14:59100774..59100790,+#_74b0d1f2f4715c800a616b1ccfe19a04 | p8@DACT1 |
| 1.22e-15 | FFCP PHASE2:Hg19::chr14:59100774..59100790,+#_74b0d1f2f4715c800a616b1ccfe19a04 | p8@DACT1 |
| 3.72e-15 | FFCP PHASE1:Hg19::chr4:157264637..157264638,-#_885d4ba78cb312278af04723a9338f40 | p@chr4:157264637..157264638, - |
| 3.72e-15 | FFCP PHASE2:Hg19::chr4:157264637..157264638,-#_885d4ba78cb312278af04723a9338f40 | p@chr4:157264637..157264638, - |
| 1.52e-14 | FFCP PHASE1:Hg19::chr19:13227319..13227326,-#_52317aafa55849da6f088e0e310e5f08 | p6@TRMT1 |
| 1.52e-14 | FFCP PHASE2:Hg19::chr19:13227319..13227326,-#_52317aafa55849da6f088e0e310e5f08 | p6@TRMT1 |
| 3.33e-14 | FFCP PHASE1:Hg19::chrX:86773039..86773065,+#_4a4100396d35b4baa40db916ee8bda3b | p2@AB385497 |
| 3.33e-14 | FFCP PHASE2:Hg19::chrX:86773039..86773065,+#_4a4100396d35b4baa40db916ee8bda3b | p2@AB385497 |
