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{{CL
{{CL
|id=CL:0002593
|alt_id=
|name=smooth muscle cell of the internal thoracic artery
|namespace=cell
|def="A smooth muscle of the internal thoracic artery." [GOC:tfm]
|xref=
|is_a=CL:0002595
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:01:41Z
|def="A smooth muscle of the internal thoracic artery." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002593
|is_a=CL:0002595
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of the internal thoracic artery
|namespace=FANTOM
|obo_creation_date=2011-03-06T05:01:41Z
|part_of=UBERON:0002456
|part_of=UBERON:0002456
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:smooth muscle cell of the internal thoracic artery
Namespace:FANTOM
Definition:"A smooth muscle of the internal thoracic artery." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:01:41Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002595(smooth muscle cell of the subclavian artery)
part_of:UBERON:0002456(internal thoracic artery)



Children


derives from:FF:0000173 (human smooth muscle cell of the internal thoracic artery sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
  • 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)

Mouse (Mus musculus)

  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
  • 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002593 (smooth muscle cell of the internal thoracic artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data