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{{CL
{{CL
|id=CL:1000615
|alt_id=
|name=kidney cortex tubule cell
|namespace=cell
|def=
|xref=KUPO:0001024
|is_a=CL:0002584;;CL:1000494
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000615
|is_a=CL:0002584 ;;CL:1000494
|is_obsolete=
|located_in=
|located_in=
|name=kidney cortex tubule cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0006853
|part_of=UBERON:0006853
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=KUPO:0001024
}}
}}

Latest revision as of 16:47, 12 September 2014

Name:kidney cortex tubule cell
Namespace:FANTOM
Xrefs:
links:
KUPO:0001024


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002584(renal cortical epithelial cell),CL:1000494(nephron tubule epithelial cell)
part_of:UBERON:0006853(renal cortex tubule)



Children


is a:CL:0002306 (epithelial cell of proximal tubule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)

Mouse (Mus musculus)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000615 (kidney cortex tubule cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_4f9089971ebe98d3ccea464038c370dfp10@WWC1
8.98e-131FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_4f9089971ebe98d3ccea464038c370dfp10@WWC1
1.01e-74FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_1464558e6c6edf07ee65720edc8c53c2p39@WWTR1
1.01e-74FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_1464558e6c6edf07ee65720edc8c53c2p39@WWTR1
1.24e-73FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_f9a567f867ae1b41578bcb3a798da640p1@ENST00000491264
1.24e-73FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_f9a567f867ae1b41578bcb3a798da640p1@ENST00000491264
2.39e-66FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_4000f9304d9d68dd7dbb18ae55c029d1p@chr16:62055187..62055188, +
2.39e-66FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_4000f9304d9d68dd7dbb18ae55c029d1p@chr16:61687533..61687551, -
2.39e-66FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_4000f9304d9d68dd7dbb18ae55c029d1p@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_4000f9304d9d68dd7dbb18ae55c029d1p@chr16:62055187..62055188, +
2.39e-66FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_4000f9304d9d68dd7dbb18ae55c029d1p@chr8:6614884..6614885, +
2.39e-66FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_4000f9304d9d68dd7dbb18ae55c029d1p@chr16:61687533..61687551, -
2.39e-66FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_4000f9304d9d68dd7dbb18ae55c029d1p@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_4000f9304d9d68dd7dbb18ae55c029d1p@chr8:6614884..6614885, +
1.22e-59FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_dfa58ecf64541c0644d64e0136fe5fb9p4@MEGF11
1.22e-59FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_dfa58ecf64541c0644d64e0136fe5fb9p4@MEGF11
3.75e-53FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_58fec75ba60c0102a397095a3850805ep@chr9:114828174..114828179, +
3.75e-53FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_58fec75ba60c0102a397095a3850805ep@chr9:114828174..114828179, +
1.65e-46FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_2ee39d216074db9e1a8f09b1b28e9948p@chr7:140227349..140227360, -
1.65e-46FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_2ee39d216074db9e1a8f09b1b28e9948p@chr7:140227349..140227360, -
7.81e-45FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_090106d0d1c866296db0fd609b5883a7p9@VARS2
7.81e-45FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_090106d0d1c866296db0fd609b5883a7p9@VARS2
6.91e-39FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_fdd945534a6f3f4d293b70b4a43f29c9p11@VARS2
6.91e-39FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_fdd945534a6f3f4d293b70b4a43f29c9p11@VARS2
1.49e-38FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_88d6a1b9d52296e5842a2f0c043e6f87p1@ENST00000534431
1.49e-38FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_88d6a1b9d52296e5842a2f0c043e6f87p1@ENST00000534431
2.64e-38FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_e4de1ec1a933ea527c7efaca66411b6dp@chr7:53466339..53466356, -
2.64e-38FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_e4de1ec1a933ea527c7efaca66411b6dp@chr7:53466339..53466356, -
3.48e-38FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_87402dd5b76a8c17bbf428c0204f4aa3p@chr17:18160552..18160565, -
3.48e-38FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_87402dd5b76a8c17bbf428c0204f4aa3p@chr17:18160552..18160565, -
3.86e-38FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_518ea1c4b4ed65321c35233153fdc82ap3@CLDN16
3.86e-38FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_518ea1c4b4ed65321c35233153fdc82ap3@CLDN16
5.76e-38FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_34b4ca5a1b4e83ac44b494f145916ae4p@chr1:1100457..1100470, +
5.76e-38FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_34b4ca5a1b4e83ac44b494f145916ae4p@chr1:1100457..1100470, +
2.08e-36FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_d7949e698682b4217d68bb0d211f03e3p4@AIF1L
2.08e-36FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_d7949e698682b4217d68bb0d211f03e3p4@AIF1L
2.25e-35FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_c63f74d2c4828e005013ebf222da030bp4@PAX2
2.25e-35FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_c63f74d2c4828e005013ebf222da030bp4@PAX2
3.2e-35FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_8bf98f3a84f6988f988bb0a555151b05p18@SCNN1A
3.2e-35FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_8bf98f3a84f6988f988bb0a555151b05p18@SCNN1A
5.96e-34FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_e90e463fdf1be87377d3a003c93a52ddp@chr6:31023284..31023287, -
5.96e-34FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_e90e463fdf1be87377d3a003c93a52ddp@chr6:31023284..31023287, -
2.09e-33FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_d0785723cdd4bc18b04c4d0623948f10p11@PAX8
2.09e-33FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_d0785723cdd4bc18b04c4d0623948f10p11@PAX8
1.41e-32FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_2e387f7be31cbeff1585687f1e6a6537p2@C14orf105
1.41e-32FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_2e387f7be31cbeff1585687f1e6a6537p2@C14orf105
2.17e-32FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_29136dbf97ef61fcaf0bf9ceb14fedb7p1@CLDN16
2.17e-32FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_29136dbf97ef61fcaf0bf9ceb14fedb7p1@CLDN16
3.1e-30FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_2ef3985f40ab26b8c134451a7e475f5bp@chr3:112127710..112127713, -
3.1e-30FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_2ef3985f40ab26b8c134451a7e475f5bp@chr3:112127710..112127713, -
4.84e-30FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_6ea9ead7dbc967333a7f573497850606p@chr20:49347516..49347535, -
4.84e-30FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_6ea9ead7dbc967333a7f573497850606p@chr20:49347516..49347535, -
6.17e-30FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_31153269679a6dcf514e1fb64d1269acp5@VARS2
6.17e-30FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_31153269679a6dcf514e1fb64d1269acp5@VARS2
8.26e-30FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_cafe7a183f9ee68399d6bce1c9ff1fd7p3@AIF1L
8.26e-30FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_cafe7a183f9ee68399d6bce1c9ff1fd7p3@AIF1L
8.74e-30FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_41085775eded5cb991838355b63bf11bp4@CLDN16
8.74e-30FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_41085775eded5cb991838355b63bf11bp4@CLDN16
4.28e-29FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_c109e7706e291bc75773766a76ad1f49p@chr7:7606139..7606151, -
4.28e-29FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_c109e7706e291bc75773766a76ad1f49p@chr7:7606139..7606151, -
5.09e-29FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_34108eceba271bc7ca8c7deea2324838p4@VARS2
5.09e-29FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_34108eceba271bc7ca8c7deea2324838p4@VARS2
4.74e-28FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_e0457a78530ee0930a68989122e38da5p7@FXYD2
4.74e-28FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_e0457a78530ee0930a68989122e38da5p7@FXYD2
2.38e-27FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_53aa78a0659b15075595852f5b07d906p11@FXYD2
2.38e-27FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_53aa78a0659b15075595852f5b07d906p11@FXYD2
3.11e-27FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_226dba6e993da56fbc59d597d1981b00p2@ENST00000354541
3.11e-27FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_226dba6e993da56fbc59d597d1981b00p2@ENST00000354541
5.07e-27FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_bbcac0687c764d3dcf368924fa765e62p@chr1:17519128..17519138, +
5.07e-27FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_bbcac0687c764d3dcf368924fa765e62p@chr1:17519128..17519138, +
1.22e-26FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_d69f3f05ce8945e41c68a4d89bc82e14p5@ATP9B
1.22e-26FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_d69f3f05ce8945e41c68a4d89bc82e14p5@ATP9B
2.01e-25FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_f806f43f3fe74e787162181de9cd05fep@chr7:98453821..98453843, -
2.01e-25FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_f806f43f3fe74e787162181de9cd05fep@chr7:98453821..98453843, -
4.31e-25FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_b55a8a66407467ae14613a5b3d7d1739p@chr2:167467988..167467993, -
4.31e-25FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_b55a8a66407467ae14613a5b3d7d1739p7@AIF1L
4.31e-25FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_b55a8a66407467ae14613a5b3d7d1739p@chr2:167467988..167467993, -
4.31e-25FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_b55a8a66407467ae14613a5b3d7d1739p7@AIF1L
5.5e-25FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_30e557dc5f28de5711b0210aba2a867cp@chr2:189157368..189157381, -
5.5e-25FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_30e557dc5f28de5711b0210aba2a867cp@chr2:189157368..189157381, -
7.93e-25FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_31248464a0bd9c9f07627832796a80e7p@chr9:119741711..119741743, -
7.93e-25FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_31248464a0bd9c9f07627832796a80e7p@chr9:119741711..119741743, -
8.07e-25FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_e53a7c6c647a318b428cecbdcee1ec66p8@KLK6
8.07e-25FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_e53a7c6c647a318b428cecbdcee1ec66p8@KLK6
1.21e-24FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_97759badb184e1f6da1a9697ad22fb77p7@HOXA10
1.21e-24FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_97759badb184e1f6da1a9697ad22fb77p7@HOXA10
1.29e-24FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_6e83f22dcc2f52acede901ef36a85ea4p@chr20:6034241..6034256, -
1.29e-24FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_6e83f22dcc2f52acede901ef36a85ea4p@chr20:6034241..6034256, -
7.91e-24FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_858a5c6c4771166770b5c6f3688425bdp3@FXYD2
7.91e-24FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_858a5c6c4771166770b5c6f3688425bdp3@FXYD2
7.91e-24FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_858a5c6c4771166770b5c6f3688425bdp2@B3GALT5
7.91e-24FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_858a5c6c4771166770b5c6f3688425bdp2@B3GALT5
9.99e-24FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_f1322137b73c1928163000b9de713c81p@chr18:3456189..3456200, +
9.99e-24FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_f1322137b73c1928163000b9de713c81p@chr18:3456189..3456200, +
9.99e-24FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_f1322137b73c1928163000b9de713c81p3@PAX2
9.99e-24FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_f1322137b73c1928163000b9de713c81p3@PAX2
3.27e-23FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_6ba6af83715037ccd51bd9a907acc5f1p@chr12:6484832..6484841, +
3.27e-23FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_6ba6af83715037ccd51bd9a907acc5f1p@chr12:6484832..6484841, +
3.29e-23FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_345c057d07346cfd5145fe0a9af5c2acp@chr3:43532224..43532252, -
3.29e-23FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_345c057d07346cfd5145fe0a9af5c2acp@chr3:43532224..43532252, -

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