DOID:201: Difference between revisions
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|located_in= | |located_in= | ||
|name=connective tissue cancer | |name=connective tissue cancer | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:49, 12 September 2014
| Name: | connective tissue cancer | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A musculoskeletal system cancer that is located_in connective tissue." [url:http://en.wikipedia.org/wiki/Connective_tissue] | ||
| Xrefs: |
| ||
| Synonyms: |
"connective tissue neoplasm" EXACT [CSP2005:2008-3809] "neoplasm of connective tissues (disorder)" EXACT [SNOMEDCT_2005_07_31:126598008] "Tumour of connective tissue" EXACT [SNOMEDCT_2005_07_31:254821003] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0060100(musculoskeletal system cancer) |
|---|
Children
| is a: | DOID:200 (giant cell tumor),DOID:3347 (osteosarcoma),DOID:3355 (fibrosarcoma),DOID:3371 (chondrosarcoma),DOID:3939 (lipomatous cancer),DOID:4231 (histiocytoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10720-109I9
- 10731-110B2
Mouse (Mus musculus)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10720-109I9
- 10731-110B2
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:201 (connective tissue cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:109694595..109694599,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr5:109694595..109694599, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:172009977..172009985,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:172009977..172009985, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:30570717..30570723,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:30570717..30570723, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:63700043..63700053,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:63700043..63700053, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:157221979..157222025,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157221979..157222025, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr16:52581957..52581960,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p8@TOX3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152590257..152590288,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:152590257..152590288, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:145124273..145124279,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:145124273..145124279, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:157230506..157230511,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157230506..157230511, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152589291..152589303,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p38@SYNE1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:154942216..154942223,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:154942216..154942223, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2141862..2141887,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141862..2141887, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:72885984..72885997,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:72885984..72885997, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2140234..2140235,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p36@CNTN4 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:18439468..18439477,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr7:18439468..18439477, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:43637641..43637648,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p16@EBNA1BP2 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr18:74535969..74535980,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr18:74535969..74535980, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:33244302..33244305,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:33244302..33244305, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141888..2141892,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141888..2141892, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chrX:135338397..135338402,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chrX:135338397..135338402, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:127441501..127441504,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p59@MGLL |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:96181408..96181419,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr15:96181408..96181419, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:18439510..18439521,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr7:18439510..18439521, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr18:74961699..74961708,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p5@GALR1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:154942206..154942211,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:154942206..154942211, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:30253410..30253431,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p2@FSHB |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:127441545..127441550,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p58@MGLL |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:96181421..96181428,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr15:96181421..96181428, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:71031372..71031377,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p25@PTPRB |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2140207..2140208,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p34@CNTN4 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:80818234..80818245,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:80818234..80818245, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:177555440..177555446,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:177555440..177555446, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:228783266..228783269,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:228783266..228783269, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:190023542..190023552,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:190023542..190023552, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:33381479..33381503,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr15:33381479..33381503, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:79920595..79920605,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:79920595..79920605, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:107074411..107074421,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr8:107074411..107074421, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:145471703..145471706,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:145471703..145471706, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:106921055..106921063,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:106921055..106921063, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:70636933..70636940,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p28@CNOT2 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:23734279..23734283,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23734279..23734283, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:107074457..107074458,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr8:107074457..107074458, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:169935453..169935460,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:169935453..169935460, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:1577545..1577547,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:1577545..1577547, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:89917192..89917200,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:89917192..89917200, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:96913362..96913393,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:96913362..96913393, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:197889977..197890013,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:197889977..197890013, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:79634044..79634053,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr9:79634044..79634053, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:157231406..157231414,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157231406..157231414, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr16:77317713..77317723,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p1@CU687665 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152792957..152792960,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:152792957..152792960, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:175629357..175629367,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p6@CHRNA1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152589452..152589462,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p43@SYNE1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:158989981..158989988,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:158989981..158989988, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:23733607..23733611,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23733607..23733611, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:27806224..27806236,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p5@ZNF512 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr14:83319766..83319776,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr14:83319766..83319776, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:139817600..139817609,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:139817600..139817609, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:23027835..23027846,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23027835..23027846, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:39548606..39548614,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr5:39548606..39548614, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:41281630..41281644,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p6@RAB4B |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152589396..152589401,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p68@SYNE1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:157206082..157206087,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157206082..157206087, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:79920639..79920642,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:79920639..79920642, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2141785..2141802,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141785..2141802, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2139856..2139863,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2139856..2139863, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:12848028..12848033,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr9:12848028..12848033, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141813..2141822,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141813..2141822, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:108955070..108955084,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p16@SART3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chrX:135338270..135338275,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chrX:135338270..135338275, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:99680705..99680734,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:99680705..99680734, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:150740842..150740854,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:150740842..150740854, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chrX:135338329..135338337,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chrX:135338329..135338337, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:196296715..196296737,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:196296715..196296737, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr21:38309134..38309135,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr21:38309134..38309135, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:188420455..188420469,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:188420455..188420469, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:163194047..163194081,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:163194047..163194081, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:188420470..188420480,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:188420470..188420480, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:192408018..192408032,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:192408018..192408032, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:71031372..71031377,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p25@PTPRB |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:198595872..198595878,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:198595872..198595878, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:80080929..80080934,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr7:80080929..80080934, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr21:17357327..17357329,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr21:17357327..17357329, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:74780643..74780673,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p30@LOXL3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:23733790..23733815,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23733790..23733815, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:142987388..142987398,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:142987388..142987398, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:112916133..112916138,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:112916133..112916138, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:80818234..80818245,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:80818234..80818245, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152592460..152592465,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:152592460..152592465, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:70636933..70636940,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p28@CNOT2 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:197873492..197873502,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:197873492..197873502, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:23734279..23734283,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23734279..23734283, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:63700076..63700086,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:63700076..63700086, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:145124273..145124279,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:145124273..145124279, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:157230506..157230511,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157230506..157230511, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:23169005..23169009,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23169005..23169009, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:172009977..172009985,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:172009977..172009985, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:157230582..157230593,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157230582..157230593, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2140234..2140235,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p36@CNTN4 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152589315..152589320,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p72@SYNE1 |
