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{{UBERON
{{UBERON
|id=UBERON:0000026
|alt_id=
|name=appendage
|namespace=
|def="Major subdivision of an organism that protrudes from the body[DOS]. Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage]
|xref=AEO:0000193;;BILA:0000018;;CARO:0010003;;EFO:0000799;;EHDAA2:0003193;;EV:0100155;;FBbt:00007000;;HAO:0000144;;MAT:0000023;;MIAA:0000023;;ncithesaurus:Appendage;;OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA;;VSAO:0000075;;XAO:0000218
|is_a=UBERON:0000475
|synonym="limbs/digits/tail" RELATED [MP:0000001]
|comment=GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers
|comment=GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Major subdivision of an organism that protrudes from the body[DOS]. Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000026
|is_a=UBERON:0000475
|is_obsolete=
|located_in=
|located_in=
|name=appendage
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="limbs/digits/tail" RELATED [MP:0000001]
|union_of=
|xref=AEO:0000193;;BILA:0000018;;CARO:0010003;;EFO:0000799;;EHDAA2:0003193;;EV:0100155;;FBbt:00007000;;HAO:0000144;;MAT:0000023;;MIAA:0000023;;ncithesaurus:Appendage;;OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA;;VSAO:0000075;;XAO:0000218
}}
}}

Latest revision as of 17:04, 12 September 2014

Name:appendage
Namespace:FANTOM
Definition:"Major subdivision of an organism that protrudes from the body[DOS]. Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage]
Xrefs:
links:

AEO:0000193
BILA:0000018
CARO:0010003
EFO:0000799
EHDAA2:0003193
EV:0100155
FBbt:00007000
HAO:0000144
MAT:0000023
MIAA:0000023
ncithesaurus:Appendage
OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA
VSAO:0000075

XAO:0000218
Synonyms: "limbs/digits/tail" RELATED [MP:0000001]
Comments:GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000475(organism subdivision)



Children

is a:UBERON:0000023 (wing),UBERON:0004708 (paired limb/fin)
part of:UBERON:0007271 (appendage musculature),UBERON:0010758 (subdivision of organism along appendicular axis)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000026 (appendage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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