UBERON:0000161: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=in FMA, this is an anatomical conduit *space*, rather than anatomical conduit | |comment=in FMA, this is an anatomical conduit *space*, rather than anatomical conduit | ||
|created_by= | |created_by= | ||
| | |def="Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000161 | |||
|is_a=UBERON:0004111 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=orifice | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=upper_ontology_conflict | ||
| | |synonym="anatomical orifice" EXACT [FMA:3724];;"anatomical ostium" EXACT [FMA:3724];;"hilum" NARROW [] | ||
|union_of= | |||
|xref=FMA:3724;;SCTID:91837002 | |||
}} | }} | ||
Latest revision as of 17:07, 12 September 2014
| Name: | orifice | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724] | ||
| Xrefs: |
| ||
| Synonyms: |
"anatomical orifice" EXACT [FMA:3724] "anatomical ostium" EXACT [FMA:3724] "hilum" NARROW [] | ||
| Comments: | in FMA, this is an anatomical conduit *space*, rather than anatomical conduit | ||
| Subset: | upper_ontology_conflict |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004111(anatomical conduit) |
|---|
Children
| is a: | UBERON:0000166 (oral opening) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10199-103F1 (parotid gland, adult)
- 10202-103F4 (submaxillary gland, adult)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10512-107D8
- 10532-107G1
- 10537-107G6
- 10544-107H4 (oral squamous cell carcinoma cell line:SAS)
- 10545-107H5 (oral squamous cell carcinoma cell line:HSC-3)
... further results Mouse (Mus musculus)
- 10047-101G2 (tonsil, adult, pool1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10199-103F1 (parotid gland, adult)
- 10202-103F4 (submaxillary gland, adult)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10512-107D8
- 10532-107G1
- 10537-107G6
- 10544-107H4 (oral squamous cell carcinoma cell line:SAS)
- 10545-107H5 (oral squamous cell carcinoma cell line:HSC-3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000161 (orifice), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.09e-46 | FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_02cf4d770a14da8cc7a3024caf18cd88 | p@chr1:132699659..132699668, + |
| 1.09e-46 | FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_02cf4d770a14da8cc7a3024caf18cd88 | p@chr1:132699659..132699668, + |
| 9.85e-40 | FFCP PHASE2:Mm9::chr11:77667108..77667156,+#_1276f6860cecf33414e2e7ea9ce80818 | p20@Myo18a |
| 9.85e-40 | FFCP PHASE1:Mm9::chr11:77667108..77667156,+#_1276f6860cecf33414e2e7ea9ce80818 | p20@Myo18a |
| 1.33e-39 | FFCP PHASE2:Mm9::chr7:29734689..29734698,-#_7974c043f64fe025ca264553736c75cd | p12@Actn4 |
| 1.33e-39 | FFCP PHASE1:Mm9::chr7:29734689..29734698,-#_7974c043f64fe025ca264553736c75cd | p12@Actn4 |
| 1.42e-35 | FFCP PHASE2:Mm9::chr15:101506711..101506719,-#_0d125fdf73087319347f922c3e039ec3 | p@chr15:101506711..101506719, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr5:86898080..86898087,-#_0d125fdf73087319347f922c3e039ec3 | p3@Tmprss11a |
| 1.42e-35 | FFCP PHASE1:Mm9::chr7:51038197..51038202,+#_0d125fdf73087319347f922c3e039ec3 | p@chr7:51038197..51038202, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr17:31827369..31827371,-#_0d125fdf73087319347f922c3e039ec3 | p@chr17:31827369..31827371, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr7:31027894..31027901,-#_0d125fdf73087319347f922c3e039ec3 | p3@Wdr62 |
| 1.42e-35 | FFCP PHASE2:Mm9::chr5:86756768..86756782,-#_0d125fdf73087319347f922c3e039ec3 | p2@Tmprss11d |
| 1.42e-35 | FFCP PHASE1:Mm9::chr7:51011533..51011538,-#_0d125fdf73087319347f922c3e039ec3 | p1@ENSMUST00000147618 |
| 1.42e-35 | FFCP PHASE2:Mm9::chr12:57793900..57793908,-#_0d125fdf73087319347f922c3e039ec3 | p@chr12:57793900..57793908, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr7:31027894..31027901,-#_0d125fdf73087319347f922c3e039ec3 | p3@Wdr62 |
| 1.42e-35 | FFCP PHASE2:Mm9::chr15:101520894..101520913,+#_0d125fdf73087319347f922c3e039ec3 | p@chr15:101520894..101520913, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr15:91729805..91729815,+#_0d125fdf73087319347f922c3e039ec3 | p@chr15:91729805..91729815, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr15:101506711..101506719,-#_0d125fdf73087319347f922c3e039ec3 | p@chr15:101506711..101506719, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr5:86802426..86802432,-#_0d125fdf73087319347f922c3e039ec3 | p4@Tmprss11d |
| 1.42e-35 | FFCP PHASE2:Mm9::chr15:91668686..91668696,+#_0d125fdf73087319347f922c3e039ec3 | p2@Smgc |
| 1.42e-35 | FFCP PHASE1:Mm9::chr3:96422520..96422551,+#_0d125fdf73087319347f922c3e039ec3 | p@chr3:96422520..96422551, + |
| 1.42e-35 | FFCP PHASE2:Mm9::chr3:96422520..96422551,+#_0d125fdf73087319347f922c3e039ec3 | p@chr3:96422520..96422551, + |
| 1.42e-35 | FFCP PHASE2:Mm9::chr15:101520939..101520945,-#_0d125fdf73087319347f922c3e039ec3 | p@chr15:101520939..101520945, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr5:86898080..86898087,-#_0d125fdf73087319347f922c3e039ec3 | p3@Tmprss11a |
| 1.42e-35 | FFCP PHASE1:Mm9::chr15:101520894..101520913,+#_0d125fdf73087319347f922c3e039ec3 | p@chr15:101520894..101520913, + |
| 1.42e-35 | FFCP PHASE2:Mm9::chr17:31827369..31827371,-#_0d125fdf73087319347f922c3e039ec3 | p@chr17:31827369..31827371, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr4:56445929..56445936,-#_0d125fdf73087319347f922c3e039ec3 | p@chr4:56445929..56445936, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr4:56445929..56445936,-#_0d125fdf73087319347f922c3e039ec3 | p@chr4:56445929..56445936, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr5:86756768..86756782,-#_0d125fdf73087319347f922c3e039ec3 | p2@Tmprss11d |
| 1.42e-35 | FFCP PHASE1:Mm9::chr12:57793900..57793908,-#_0d125fdf73087319347f922c3e039ec3 | p@chr12:57793900..57793908, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr18:35502686..35502690,-#_0d125fdf73087319347f922c3e039ec3 | p@chr18:35502686..35502690, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr7:51011533..51011538,-#_0d125fdf73087319347f922c3e039ec3 | p1@ENSMUST00000147618 |
| 1.42e-35 | FFCP PHASE1:Mm9::chr15:101520939..101520945,-#_0d125fdf73087319347f922c3e039ec3 | p@chr15:101520939..101520945, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr15:91668686..91668696,+#_0d125fdf73087319347f922c3e039ec3 | p2@Smgc |
| 1.42e-35 | FFCP PHASE1:Mm9::chr18:35502686..35502690,-#_0d125fdf73087319347f922c3e039ec3 | p@chr18:35502686..35502690, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr15:91729805..91729815,+#_0d125fdf73087319347f922c3e039ec3 | p@chr15:91729805..91729815, + |
| 1.42e-35 | FFCP PHASE2:Mm9::chr7:51038197..51038202,+#_0d125fdf73087319347f922c3e039ec3 | p@chr7:51038197..51038202, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr5:86802426..86802432,-#_0d125fdf73087319347f922c3e039ec3 | p4@Tmprss11d |
| 4.69e-32 | FFCP PHASE2:Mm9::chr3:113280651..113280658,-#_f624b74488aa5975a0d27dd1ef39d82f | p7@Amy1 |
| 4.69e-32 | FFCP PHASE1:Mm9::chr3:113280651..113280658,-#_f624b74488aa5975a0d27dd1ef39d82f | p7@Amy1 |
| 7.61e-32 | FFCP PHASE1:Mm9::chr3:91974134..91974144,+#_0990bf660fcd0e64ba9c5c710f2e36fd | p1@uc008qdo.1 |
| 7.61e-32 | FFCP PHASE2:Mm9::chr3:91974134..91974144,+#_0990bf660fcd0e64ba9c5c710f2e36fd | p1@uc008qdo.1 |
| 9.68e-32 | FFCP PHASE1:Mm9::chr2:64813740..64813748,-#_888a87e45f5b3278c591587bac0a0495 | p7@Grb14 |
| 9.68e-32 | FFCP PHASE2:Mm9::chr2:64813740..64813748,-#_888a87e45f5b3278c591587bac0a0495 | p7@Grb14 |
| 1.92e-31 | FFCP PHASE1:Mm9::chr9:50302244..50302251,+#_cd005990afec45fcd73964b286484de5 | p3@1600029D21Rik |
| 1.92e-31 | FFCP PHASE2:Mm9::chr9:50302244..50302251,+#_cd005990afec45fcd73964b286484de5 | p3@1600029D21Rik |
| 1.99e-28 | FFCP PHASE2:Hg19::chr16:2882120..2882124,+#_4ff94c6b209f4778ba8fd76d0088340b | p@chr16:2882120..2882124, + |
| 1.99e-28 | FFCP PHASE1:Hg19::chr16:2882120..2882124,+#_4ff94c6b209f4778ba8fd76d0088340b | p@chr16:2882120..2882124, + |
| 3.53e-28 | FFCP PHASE1:Mm9::chr7:135148666..135148682,-#_52806d82a42c588139e30e5036154142 | p1@ENSMUST00000126205 |
| 3.53e-28 | FFCP PHASE2:Mm9::chr7:135148666..135148682,-#_52806d82a42c588139e30e5036154142 | p1@ENSMUST00000126205 |
| 5.37e-28 | FFCP PHASE1:Hg19::chr4:71347478..71347512,-#_6cb7879bda7ab4077b5db8c23935af04 | p1@CU693013 |
| 5.37e-28 | FFCP PHASE1:Hg19::chr4:71346691..71346709,-#_6cb7879bda7ab4077b5db8c23935af04 | p@chr4:71346691..71346709, - |
| 5.37e-28 | FFCP PHASE2:Hg19::chr16:2880736..2880751,+#_6cb7879bda7ab4077b5db8c23935af04 | p@chr16:2880736..2880751, + |
| 5.37e-28 | FFCP PHASE1:Hg19::chr16:2880736..2880751,+#_6cb7879bda7ab4077b5db8c23935af04 | p@chr16:2880736..2880751, + |
| 5.37e-28 | FFCP PHASE2:Hg19::chr4:71347478..71347512,-#_6cb7879bda7ab4077b5db8c23935af04 | p1@CU693013 |
| 5.37e-28 | FFCP PHASE2:Hg19::chr4:71346691..71346709,-#_6cb7879bda7ab4077b5db8c23935af04 | p@chr4:71346691..71346709, - |
| 5.37e-28 | FFCP PHASE1:Hg19::chr4:71346609..71346620,+#_6cb7879bda7ab4077b5db8c23935af04 | p1@BX648904 |
| 5.37e-28 | FFCP PHASE1:Hg19::chr4:71339736..71339746,+#_6cb7879bda7ab4077b5db8c23935af04 | p14@MUC7 |
| 5.37e-28 | FFCP PHASE2:Hg19::chr16:2880755..2880772,-#_6cb7879bda7ab4077b5db8c23935af04 | p@chr16:2880755..2880772, - |
| 5.37e-28 | FFCP PHASE1:Hg19::chr16:2880755..2880772,-#_6cb7879bda7ab4077b5db8c23935af04 | p@chr16:2880755..2880772, - |
| 5.37e-28 | FFCP PHASE1:Hg19::chr4:71347643..71347654,+#_6cb7879bda7ab4077b5db8c23935af04 | p@chr4:71347643..71347654, + |
| 5.37e-28 | FFCP PHASE2:Hg19::chr4:71346609..71346620,+#_6cb7879bda7ab4077b5db8c23935af04 | p1@BX648904 |
| 5.37e-28 | FFCP PHASE1:Hg19::chr4:189860069..189860075,+#_6cb7879bda7ab4077b5db8c23935af04 | p@chr4:189860069..189860075, + |
| 5.37e-28 | FFCP PHASE1:Hg19::chr4:71347264..71347292,-#_6cb7879bda7ab4077b5db8c23935af04 | p2@CU693013 |
| 5.37e-28 | FFCP PHASE2:Hg19::chr4:71339736..71339746,+#_6cb7879bda7ab4077b5db8c23935af04 | p14@MUC7 |
| 5.37e-28 | FFCP PHASE2:Hg19::chr4:71347643..71347654,+#_6cb7879bda7ab4077b5db8c23935af04 | p@chr4:71347643..71347654, + |
| 5.37e-28 | FFCP PHASE2:Hg19::chr4:189860069..189860075,+#_6cb7879bda7ab4077b5db8c23935af04 | p@chr4:189860069..189860075, + |
| 5.37e-28 | FFCP PHASE2:Hg19::chr4:71347264..71347292,-#_6cb7879bda7ab4077b5db8c23935af04 | p2@CU693013 |
| 1.53e-27 | FFCP PHASE1:Hg19::chr4:69313145..69313164,+#_8d8173e60c3e192cd48dc12303a9efab | p2@TMPRSS11E |
| 1.53e-27 | FFCP PHASE2:Hg19::chr4:69313145..69313164,+#_8d8173e60c3e192cd48dc12303a9efab | p2@TMPRSS11E |
| 3.42e-27 | FFCP PHASE2:Mm9::chr15:74615359..74615367,-#_e9da7807f055b22dddb9f748f0c43455 | p@chr15:74615359..74615367, - |
| 3.42e-27 | FFCP PHASE1:Mm9::chr15:74615359..74615367,-#_e9da7807f055b22dddb9f748f0c43455 | p@chr15:74615359..74615367, - |
| 4.18e-27 | FFCP PHASE1:Mm9::chr17:24175190..24175195,+#_bf6ee783e222cf778d84bb5c6e74f94c | p2@Prss27 |
| 4.18e-27 | FFCP PHASE2:Mm9::chr17:24175190..24175195,+#_bf6ee783e222cf778d84bb5c6e74f94c | p2@Prss27 |
| 5.12e-27 | FFCP PHASE2:Mm9::chr3:108577839..108577848,+#_b491c75af7b9d2b0fd4b2a1cc149e465 | p@chr3:108577839..108577848, + |
| 5.12e-27 | FFCP PHASE1:Mm9::chr3:108577839..108577848,+#_b491c75af7b9d2b0fd4b2a1cc149e465 | p@chr3:108577839..108577848, + |
| 7.67e-27 | FFCP PHASE1:Mm9::chr4:122366534..122366563,+#_a18f6ec1c003366e3aff118b61310917 | p2@9530002B09Rik |
| 7.67e-27 | FFCP PHASE2:Mm9::chr9:122943849..122943870,+#_a18f6ec1c003366e3aff118b61310917 | p1@Tgm4 |
| 7.67e-27 | FFCP PHASE1:Mm9::chr9:122943849..122943870,+#_a18f6ec1c003366e3aff118b61310917 | p1@Tgm4 |
| 7.67e-27 | FFCP PHASE2:Mm9::chr7:28914823..28914829,+#_a18f6ec1c003366e3aff118b61310917 | p1@9530053A07Rik |
| 7.67e-27 | FFCP PHASE1:Mm9::chr7:28914823..28914829,+#_a18f6ec1c003366e3aff118b61310917 | p1@9530053A07Rik |
| 7.67e-27 | FFCP PHASE2:Mm9::chr4:122366534..122366563,+#_a18f6ec1c003366e3aff118b61310917 | p2@9530002B09Rik |
| 8.55e-27 | FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_006f7e806230187065b1572e26c7cc5b | p2@PAX9 |
| 8.55e-27 | FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_006f7e806230187065b1572e26c7cc5b | p2@PAX9 |
| 1.15e-26 | FFCP PHASE2:Mm9::chr2:80157000..80157030,+#_a9f73ee606981531a1de13781952ae5d | p@chr2:80157000..80157030, + |
| 1.15e-26 | FFCP PHASE1:Mm9::chr2:80157000..80157030,+#_a9f73ee606981531a1de13781952ae5d | p@chr2:80157000..80157030, + |
| 1.3e-24 | FFCP PHASE1:Hg19::chr5:134375398..134375414,-#_97e754f0be912bf94e8cd755bf2e845a | p2@ENST00000511256 |
| 1.3e-24 | FFCP PHASE2:Hg19::chr5:134375398..134375414,-#_97e754f0be912bf94e8cd755bf2e845a | p2@ENST00000511256 |
| 2.98e-24 | FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_cdaf1a03a0cf5febd4f741ad75606d6f | p@chr9:96425983..96425992, + |
| 2.98e-24 | FFCP PHASE1:Mm9::chr7:31027882..31027890,-#_cdaf1a03a0cf5febd4f741ad75606d6f | p2@Wdr62 |
| 2.98e-24 | FFCP PHASE1:Mm9::chr10:28755265..28755269,-#_cdaf1a03a0cf5febd4f741ad75606d6f | p@chr10:28755265..28755269, - |
| 2.98e-24 | FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_cdaf1a03a0cf5febd4f741ad75606d6f | p@chr7:114836650..114836663, + |
| 2.98e-24 | FFCP PHASE1:Mm9::chr1:52741574..52741579,+#_cdaf1a03a0cf5febd4f741ad75606d6f | p@chr1:52741574..52741579, + |
| 2.98e-24 | FFCP PHASE2:Mm9::chr6:60435965..60435986,+#_cdaf1a03a0cf5febd4f741ad75606d6f | p@chr6:60435965..60435986, + |
| 2.98e-24 | FFCP PHASE1:Mm9::chr5:86802463..86802475,-#_cdaf1a03a0cf5febd4f741ad75606d6f | p3@Tmprss11d |
| 2.98e-24 | FFCP PHASE2:Mm9::chr17:40656968..40656977,+#_cdaf1a03a0cf5febd4f741ad75606d6f | p2@Gm17495 |
| 2.98e-24 | FFCP PHASE1:Mm9::chr6:60435965..60435986,+#_cdaf1a03a0cf5febd4f741ad75606d6f | p@chr6:60435965..60435986, + |
| 2.98e-24 | FFCP PHASE1:Mm9::chr7:114836650..114836663,+#_cdaf1a03a0cf5febd4f741ad75606d6f | p@chr7:114836650..114836663, + |
| 2.98e-24 | FFCP PHASE2:Mm9::chr10:28755265..28755269,-#_cdaf1a03a0cf5febd4f741ad75606d6f | p@chr10:28755265..28755269, - |
| 2.98e-24 | FFCP PHASE1:Mm9::chr15:101524277..101524311,-#_cdaf1a03a0cf5febd4f741ad75606d6f | p@chr15:101524277..101524311, - |
