UBERON:0000165: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000165
|name=mouth
|namespace=
|def="First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikiped...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|anatomical_img_id=FMA:49184 | |||
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|comment=TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract | |comment=TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract | ||
|created_by= | |created_by= | ||
| | |def="First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0000930 | |develops_from=UBERON:0000930 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000165 | |||
|is_a=UBERON:0004906 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON: | |name=mouth | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |namespace=FANTOM | ||
|obo_creation_date= | |||
|part_of=UBERON:0000033 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO]" xsd:string | |||
|subset=major_organ;;uberon_slim;;vertebrate_core | |||
|synonym="adult mouth" EXACT [];;"cavitas oris" RELATED [BTO:0001090];;"cavum oris" RELATED [BTO:0001090];;"mouth cavity" RELATED [BTO:0001090];;"oral vestibule" RELATED [BTO:0001090];;"os, cavital oralis" RELATED LATIN [Wikipedia:Mouth];;"regio oralis" EXACT [FMA:49184, FMA:TA];;"rima oris" RELATED [BTO:0001090];;"stoma" RELATED [];;"vestibule of mouth" RELATED [BTO:0001090];;"vestibulum oris" RELATED [BTO:0001090] | |||
|union_of= | |||
|xref=AAO:0010355;;BTO:0001090;;EFO:0000825;;FBbt:00003126;;FMA:49184;;GAID:75;;galen:Mouth;;http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg;;MA:0002474;;MAT:0000038;;MESH:A.01.456.505.631;;MIAA:0000038;;OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA;;TADS:0000040;;TAO:0000547;;TGMA:0000131;;VHOG:0000812;;XAO:0003029;;ZFA:0000547 | |||
}} | }} |
Latest revision as of 17:07, 12 September 2014
Name: | mouth | |
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Namespace: | FANTOM | |
Definition: | "First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth] | |
Xrefs: |
| |
Synonyms: |
"adult mouth" EXACT [] "cavitas oris" RELATED [BTO:0001090] "cavum oris" RELATED [BTO:0001090] "mouth cavity" RELATED [BTO:0001090] "oral vestibule" RELATED [BTO:0001090] "os, cavital oralis" RELATED LATIN [Wikipedia:Mouth] "regio oralis" EXACT [FMA:49184, FMA:TA] "rima oris" RELATED [BTO:0001090] "stoma" RELATED [] "vestibule of mouth" RELATED [BTO:0001090] "vestibulum oris" RELATED [BTO:0001090] | |
Comments: | TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract | |
Subset: |
major_organ uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004906(ectodermal part of digestive tract) |
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develops_from: | UBERON:0000930(stomodeum) |
part_of: | UBERON:0000033(head) |
Children
part of: | UBERON:0000166 (oral opening),UBERON:0000167 (oral cavity),UBERON:0001723 (tongue),UBERON:0003729 (mouth mucosa),UBERON:0010047 (oral gland),UBERON:0010056 (future tongue),UBERON:0011595 (jaw region) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10059-101H5 (tongue, fetal, donor1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10199-103F1 (parotid gland, adult)
- 10202-103F4 (submaxillary gland, adult)
- 10203-103F5 (tongue, adult)
- 10288-104F9 (tongue epidermis (fungiform papillae), donor1)
- 10289-104G1
- 10316-105A1
- 10317-105A2
... further results Mouse (Mus musculus)
- 10047-101G2 (tonsil, adult, pool1)
- 10059-101H5 (tongue, fetal, donor1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10199-103F1 (parotid gland, adult)
- 10202-103F4 (submaxillary gland, adult)
- 10203-103F5 (tongue, adult)
- 10288-104F9 (tongue epidermis (fungiform papillae), donor1)
- 10289-104G1
- 10316-105A1
- 10317-105A2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000165 (mouth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.