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{{UBERON
{{UBERON
|id=UBERON:0000171
|alt_id=
|name=respiration organ
|namespace=
|def="Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585]
|xref=EMAPA:17607;;SCTID:272626006;;SPD:0000428;;TGMA:0001247
|is_a=UBERON:0000062
|synonym="apparatus respiratorius organ" EXACT [OBOL:automatic];;"breathing organ" EXACT [];;"gas exchange organ" RELATED [];;"organ of apparatus respiratorius" EXACT [OBOL:automatic];;"organ of respiratory system" EXACT [OBOL:automatic];;"respiratory organ" EXACT [];;"respiratory system organ" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585]
|subset=functional_classification;;organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000171
|is_a=UBERON:0000062
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=respiration organ
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001004
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=functional_classification;;organ_slim
|preceded_by=
|synonym="apparatus respiratorius organ" EXACT [OBOL:automatic];;"breathing organ" EXACT [];;"gas exchange organ" RELATED [];;"organ of apparatus respiratorius" EXACT [OBOL:automatic];;"organ of respiratory system" EXACT [OBOL:automatic];;"respiratory organ" EXACT [];;"respiratory system organ" EXACT [OBOL:automatic]
|union_of=
|xref=EMAPA:17607;;SCTID:272626006;;SPD:0000428;;TGMA:0001247
}}
}}

Latest revision as of 17:07, 12 September 2014

Name:respiration organ
Namespace:FANTOM
Definition:"Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585]
Xrefs:
links:

EMAPA:17607
SCTID:272626006
SPD:0000428

TGMA:0001247
Synonyms: "apparatus respiratorius organ" EXACT [OBOL:automatic]
"breathing organ" EXACT []
"gas exchange organ" RELATED []
"organ of apparatus respiratorius" EXACT [OBOL:automatic]
"organ of respiratory system" EXACT [OBOL:automatic]
"respiratory organ" EXACT []
"respiratory system organ" EXACT [OBOL:automatic]
Subset: functional_classification
organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ)
part_of:UBERON:0001004(respiratory system)



Children

is a:UBERON:0002048 (lung)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000171 (respiration organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.5e-81FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_d20d06bd749248696701ff3ced1764f9p4@Tbx4
3.5e-81FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_d20d06bd749248696701ff3ced1764f9p4@Tbx4
1.94e-76FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_6e60aaf1263c4a3704156e15fc713fbep1@ENSMUST00000134305
1.94e-76FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_6e60aaf1263c4a3704156e15fc713fbep1@ENSMUST00000134305
6.06e-75FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_1e0a2cb9953d5ff9ea56a2d29e7c9370p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
6.06e-75FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_1e0a2cb9953d5ff9ea56a2d29e7c9370p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
7.98e-75FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_b16d3c68de3b8af5bc4e52328d4d592bp6@Tbx4
7.98e-75FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_b16d3c68de3b8af5bc4e52328d4d592bp6@Tbx4
3.64e-74FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_4183a157fd020c24ca9f8746e50308d4p@chr12:57598716..57598720, -
3.64e-74FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_4183a157fd020c24ca9f8746e50308d4p@chr12:57636003..57636017, -
3.64e-74FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_4183a157fd020c24ca9f8746e50308d4p@chr4:138812977..138812992, +
3.64e-74FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_4183a157fd020c24ca9f8746e50308d4p@chr11:59457994..59457997, -
3.64e-74FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_4183a157fd020c24ca9f8746e50308d4p@chr12:57598716..57598720, -
3.64e-74FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_4183a157fd020c24ca9f8746e50308d4p@chr4:138812977..138812992, +
3.64e-74FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_4183a157fd020c24ca9f8746e50308d4p@chr8:94878479..94878503, -
3.64e-74FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_4183a157fd020c24ca9f8746e50308d4p@chr12:57636003..57636017, -
3.64e-74FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_4183a157fd020c24ca9f8746e50308d4p@chr8:94878479..94878503, -
3.64e-74FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_4183a157fd020c24ca9f8746e50308d4p@chr11:59457994..59457997, -
3.06e-70FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_b8bce13662e87ba2d5b0d0da43d97ea3p8@Nkx2-1
3.06e-70FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_b8bce13662e87ba2d5b0d0da43d97ea3p8@Nkx2-1
3.48e-70FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_cd8c86c070ad7c547554c715c7d361f7p2@E030019B13Rik
3.48e-70FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_cd8c86c070ad7c547554c715c7d361f7p2@E030019B13Rik
3.96e-70FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_66cbbf9b4d1f8b9c84a05894b40daa87p10@Nebl
3.96e-70FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_66cbbf9b4d1f8b9c84a05894b40daa87p10@Nebl
4.5e-70FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_6ea1bb4a2367326979ac2e1a4be9c47bp9@Nkx2-1
4.5e-70FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_6ea1bb4a2367326979ac2e1a4be9c47bp9@Nkx2-1
9.69e-69FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_2c3e23e256e0beb62914ce5e8714c02ep3@Trpm6
9.69e-69FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_2c3e23e256e0beb62914ce5e8714c02ep3@E030019B13Rik
9.69e-69FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_2c3e23e256e0beb62914ce5e8714c02ep@chr12:57598537..57598547, -
9.69e-69FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_2c3e23e256e0beb62914ce5e8714c02ep3@E030019B13Rik
9.69e-69FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_2c3e23e256e0beb62914ce5e8714c02ep3@Trpm6
9.69e-69FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_2c3e23e256e0beb62914ce5e8714c02ep@chr12:57598537..57598547, -
1.11e-68FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_ef5ab4a86c476d706413e178cfac7a33p@chr14:115241755..115241762, -
1.11e-68FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_ef5ab4a86c476d706413e178cfac7a33p@chr14:115241755..115241762, -
1.27e-68FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_ba82a546c44ed1e9c2fba481ea685a57p@chr4:138812999..138813015, +
1.27e-68FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_ba82a546c44ed1e9c2fba481ea685a57p@chr4:138812999..138813015, +
4.47e-68FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_55c7a3898a99a6ada81319312e59f94cp@chr5:120282691..120282701, +
4.47e-68FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_55c7a3898a99a6ada81319312e59f94cp@chr5:120282691..120282701, +
5.44e-68FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_3287376da2d02575a463a38c80ba17f4p@chr2:66524237..66524246, -
5.44e-68FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_3287376da2d02575a463a38c80ba17f4p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_3287376da2d02575a463a38c80ba17f4p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_3287376da2d02575a463a38c80ba17f4p3@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_3287376da2d02575a463a38c80ba17f4p4@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_3287376da2d02575a463a38c80ba17f4p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_3287376da2d02575a463a38c80ba17f4p@chr14:70921265..70921285, -
5.44e-68FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_3287376da2d02575a463a38c80ba17f4p4@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_3287376da2d02575a463a38c80ba17f4p3@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_3287376da2d02575a463a38c80ba17f4p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_3287376da2d02575a463a38c80ba17f4p@chr14:70921265..70921285, -
5.44e-68FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_3287376da2d02575a463a38c80ba17f4p@chr2:66524237..66524246, -
5.08e-66FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_98c5d4cabcb4ef0db958998557d69baap4@E030019B13Rik
5.08e-66FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_98c5d4cabcb4ef0db958998557d69baap4@E030019B13Rik
4.92e-64FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_822f03c68358ebe5c388a923436625fcp@chr14:70922007..70922052, +
4.92e-64FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_822f03c68358ebe5c388a923436625fcp@chr12:57623172..57623185, -
4.92e-64FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_822f03c68358ebe5c388a923436625fcp@chr14:70922007..70922052, +
4.92e-64FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_822f03c68358ebe5c388a923436625fcp@chr12:57623172..57623185, -
5.59e-64FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_054999015657a81e84a95e489a4ce6ccp@chr5:28785436..28785450, -
5.59e-64FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_054999015657a81e84a95e489a4ce6ccp@chr5:28785436..28785450, -
6.35e-64FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_196ded9bde895500dda983811ff082a0p@chr14:70922459..70922482, -
6.35e-64FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_196ded9bde895500dda983811ff082a0p@chr14:70922459..70922482, -
2.55e-63FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_bda836f2ff7a86746820546c995f2958p4@Etv5
2.55e-63FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_bda836f2ff7a86746820546c995f2958p4@Etv5
1.43e-62FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr6:72259797..72259814, +
1.43e-62FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr6:72264890..72264911, +
1.43e-62FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_bef30edcc7d5caa98c7c3c5fa0daebfdp4@Lamp3
1.43e-62FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr6:72263977..72263993, +
1.43e-62FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr6:72263977..72263993, +
1.43e-62FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr12:57376690..57376716, -
1.43e-62FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr6:72264418..72264441, +
1.43e-62FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr14:70923240..70923251, -
1.43e-62FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr12:57376690..57376716, -
1.43e-62FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr6:72259797..72259814, +
1.43e-62FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr14:70922486..70922510, -
1.43e-62FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr14:70923240..70923251, -
1.43e-62FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr6:72264890..72264911, +
1.43e-62FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_bef30edcc7d5caa98c7c3c5fa0daebfdp4@Lamp3
1.43e-62FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_bef30edcc7d5caa98c7c3c5fa0daebfdp@chr14:70922486..70922510, -
1.63e-62FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_11dadd6f0d03acca965a9618b65bf42fp@chr6:72264609..72264653, -
1.63e-62FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_11dadd6f0d03acca965a9618b65bf42fp@chr6:72264609..72264653, -
1.87e-62FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_eae444afb7ccf96558cc66f54b134483p@chr6:129378567..129378573, -
1.87e-62FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_eae444afb7ccf96558cc66f54b134483p@chr6:129378567..129378573, -
1.91e-62FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_2ea9e76493132fe5aef91b8e50b2ef80p16@Pde5a
1.91e-62FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_2ea9e76493132fe5aef91b8e50b2ef80p16@Pde5a
3.02e-62FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_a4e14122911e9e4ffc939a31de26b953p7@Nkx2-1
3.02e-62FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_a4e14122911e9e4ffc939a31de26b953p7@Nkx2-1
5.06e-62FFCP PHASE1:Mm9::chr12:57636936..57636953,-#_53be32c77622a008625500e82a79e56fp@chr12:57636936..57636953, -
5.06e-62FFCP PHASE2:Mm9::chr12:57636936..57636953,-#_53be32c77622a008625500e82a79e56fp@chr12:57636936..57636953, -
7.58e-62FFCP PHASE1:Mm9::chr9:110959404..110959419,-#_87e71bf106f8af3c6449d34772df42ddp9@Ccrl2
7.58e-62FFCP PHASE2:Mm9::chr14:70931508..70931519,+#_87e71bf106f8af3c6449d34772df42ddp@chr14:70931508..70931519, +
7.58e-62FFCP PHASE2:Mm9::chr9:14522825..14522837,-#_87e71bf106f8af3c6449d34772df42ddp3@Piwil4
7.58e-62FFCP PHASE1:Mm9::chr9:14522825..14522837,-#_87e71bf106f8af3c6449d34772df42ddp3@Piwil4
7.58e-62FFCP PHASE2:Mm9::chr6:72260761..72260774,-#_87e71bf106f8af3c6449d34772df42ddp@chr6:72260761..72260774, -
7.58e-62FFCP PHASE1:Mm9::chr16:19673260..19673277,-#_87e71bf106f8af3c6449d34772df42ddp@chr16:19673260..19673277, -
7.58e-62FFCP PHASE2:Mm9::chr9:110959404..110959419,-#_87e71bf106f8af3c6449d34772df42ddp9@Ccrl2
7.58e-62FFCP PHASE1:Mm9::chr14:41951096..41951112,+#_87e71bf106f8af3c6449d34772df42ddp@chr14:41951096..41951112, +
7.58e-62FFCP PHASE2:Mm9::chr2:126950686..126950702,-#_87e71bf106f8af3c6449d34772df42ddp@chr2:126950686..126950702, -
7.58e-62FFCP PHASE1:Mm9::chr2:152591095..152591110,-#_87e71bf106f8af3c6449d34772df42ddp@chr2:152591095..152591110, -
7.58e-62FFCP PHASE1:Mm9::chr6:72260761..72260774,-#_87e71bf106f8af3c6449d34772df42ddp@chr6:72260761..72260774, -
7.58e-62FFCP PHASE2:Mm9::chr6:72259749..72259765,+#_87e71bf106f8af3c6449d34772df42ddp@chr6:72259749..72259765, +

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