UBERON:0000365: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:BTO_0001245-FMA_67695 | ||
|comment=consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium' | |comment=consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium' | ||
|created_by= | |created_by= | ||
| | |def="The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000365 | |||
|is_a=UBERON:0005910 ;;UBERON:0006554 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=urothelium | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001008 | |part_of=UBERON:0001008 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="uroepithelium" EXACT [FMA:67695] | ||
|union_of= | |||
|xref=BTO:0003906;;EMAPA:28089;;FMA:67695;;GAID:935;;http://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png;;MESH:A.10.272.850;;ncithesaurus:Urothelium;;SCTID:57789003 | |||
}} | }} | ||
Latest revision as of 17:08, 12 September 2014
| Name: | urothelium | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium] | |
| Xrefs: |
| |
| Synonyms: | "uroepithelium" EXACT [FMA:67695] | |
| Comments: | consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium' | |
| Alt_id: | UBERON:BTO_0001245-FMA_67695 |
Harnblase_Urothel.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005910(transitional epithelium),UBERON:0006554(urinary system structure) |
|---|---|
| part_of: | UBERON:0001008(renal system) |
Children
| is a: | UBERON:0004645 (urinary bladder urothelium) |
|---|---|
| part of: | CL:0000731 (urothelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000365 (urothelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
