Personal tools

UBERON:0000974: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000974
|name=neck
|namespace=
|def="Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck]
|xref=AEO:0000108;;BTO:0000420;;EFO:0000967;;EHDAA2:0003108;;FMA:7155;;GAID:86;;galen:Neck;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg;;MA:0000024;;MAT:0000297;;MESH:A.01.598;;MIAA:0000297;;ncithesaurus:Neck;;OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA;;SCTID:302550007
|is_a=UBERON:0000475
|synonym=
|comment=TODO - generic definition
|alt_id=UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
|alt_id=UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
|disjoint_from=
|anatomical_img_id=FMA:7155
|union_of=
|comment=Usage notes: true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck.
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000974
|is_a=UBERON:0000475
|is_obsolete=
|located_in=
|located_in=
|name=neck
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000153;;UBERON:0007811
|part_of=UBERON:0000153;;UBERON:0007811
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value="dubious_for_taxon" NCBITaxon:32443;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="collum" RELATED LATIN [Wikipedia:Neck]
|union_of=
|xref=AEO:0000108;;BTO:0000420;;EFO:0000967;;EHDAA2:0003108;;FMA:7155;;GAID:86;;galen:Neck;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg;;MA:0000024;;MAT:0000297;;MESH:A.01.598;;MIAA:0000297;;ncithesaurus:Neck;;OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA;;SCTID:302550007
}}
}}

Latest revision as of 17:12, 12 September 2014

Name:neck
Namespace:FANTOM
Definition:"Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck]
Xrefs:
links:

AEO:0000108
BTO:0000420
EFO:0000967
EHDAA2:0003108
FMA:7155
GAID:86
galen:Neck
[1]
MA:0000024
MAT:0000297
MESH:A.01.598
MIAA:0000297
ncithesaurus:Neck
OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA

SCTID:302550007
Synonyms: "collum" RELATED LATIN [Wikipedia:Neck]
Comments:Usage notes: true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck.
Alt_id: UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000475(organism subdivision)
part_of:UBERON:0000153(anterior region of body),UBERON:0007811(craniocervical region)



Children

part of:UBERON:0000341 (throat),UBERON:0005562 (thymus primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000974 (neck), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.76e-68FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_7238eb45a4984197e5c2b81e8c197f9cp4@uc009bpa.1
1.76e-68FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_7238eb45a4984197e5c2b81e8c197f9cp4@uc009bpa.1
2.4e-67FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_f5054c81f8d04712ac7c5f94fc3e47b2p8@uc009bpa.1
2.4e-67FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_f5054c81f8d04712ac7c5f94fc3e47b2p8@uc009bpa.1
1.12e-65FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_1adc360b7ad93bf3c3496d6ee8f219dep1@ENSMUST00000103288, p1@uc009bpl.1
1.12e-65FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_1adc360b7ad93bf3c3496d6ee8f219dep1@ENSMUST00000103288, p1@uc009bpl.1
2.12e-64FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_c56aeafc26793df679d156c1445a5dd7p@chr12:108361918..108361930, -
2.12e-64FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_c56aeafc26793df679d156c1445a5dd7p@chr6:41491752..41491776, -
2.12e-64FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_c56aeafc26793df679d156c1445a5dd7p@chr6:41491752..41491776, -
2.12e-64FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_c56aeafc26793df679d156c1445a5dd7p@chr12:108361918..108361930, -
3.88e-63FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_1f627209c614cb2a02e0c0ac25ef85a8p2@ENSMUST00000103283
3.88e-63FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_1f627209c614cb2a02e0c0ac25ef85a8p2@ENSMUST00000103283
4.88e-63FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_05a68fa82b4db7d5647d9e2d88c03ecbp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
4.88e-63FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_05a68fa82b4db7d5647d9e2d88c03ecbp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
7.68e-62FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_f3abbddf90006ee540156bb3dc94174dp@chr9:44807434..44807445, -
7.68e-62FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_f3abbddf90006ee540156bb3dc94174dp@chr9:44807434..44807445, -
1.0e-61FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_0b876d5ae978a1d5f18d8553efdf15bap@chr6:41494001..41494028, +
1.0e-61FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_0b876d5ae978a1d5f18d8553efdf15bap@chr6:41494001..41494028, +
2.4e-61FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_a2b89f7c8640e1a1c5cc90f6d983604ap@chr9:44809185..44809215, -
2.4e-61FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_a2b89f7c8640e1a1c5cc90f6d983604ap@chr9:44809185..44809215, -
2.59e-61FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_c52165c61634b4b96e87538b839bfb86p11@Prkcq
2.59e-61FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_c52165c61634b4b96e87538b839bfb86p11@Prkcq
8.25e-61FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_924a5a1b7d4e85bcb6abc9c0fbc3c6cfp@chr14:54791784..54791787, +
8.25e-61FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_924a5a1b7d4e85bcb6abc9c0fbc3c6cfp@chr14:54791784..54791787, +
1.47e-60FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_9f911d1bc9ef4dccb14e20056986447bp1@ENSMUST00000103263
1.47e-60FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_9f911d1bc9ef4dccb14e20056986447bp1@ENSMUST00000103263
2.74e-60FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_40ce1127a0a73a8fc08113e2babdb14ep5@Themis
2.74e-60FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_40ce1127a0a73a8fc08113e2babdb14ep5@Themis
3.21e-60FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_92aaa98abb832daee01d51522eb60167p5@uc009bpa.1
3.21e-60FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_92aaa98abb832daee01d51522eb60167p5@uc009bpa.1
3.77e-60FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_927dc2438c3609340919ed20635d2b04p@chr9:44793518..44793537, +
3.77e-60FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_927dc2438c3609340919ed20635d2b04p@chr9:44793518..44793537, +
4.87e-60FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_775275c7f1a630ec1aeca1a0da67416ap@chr6:41071548..41071565, +
4.87e-60FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_775275c7f1a630ec1aeca1a0da67416ap@chr6:41071548..41071565, +
9.63e-60FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_f8f2dea3881125138cb390b5360ad860p2@uc009bnp.1, p2@uc012eki.1
9.63e-60FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_f8f2dea3881125138cb390b5360ad860p2@uc009bnp.1, p2@uc012eki.1
1.1e-59FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_3e584efc4a25f3b40e4080026a68818ep3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.1e-59FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_3e584efc4a25f3b40e4080026a68818ep3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
5.49e-59FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_50403456043528cfc3567e3582c26b8ep5@Tcf7
5.49e-59FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_50403456043528cfc3567e3582c26b8ep5@Tcf7
2.14e-58FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_722cf486060e799e177d33670b1a1231p@chr14:61328148..61328173, +
2.14e-58FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_722cf486060e799e177d33670b1a1231p@chr14:61328148..61328173, +
3.25e-58FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_736b39e00629859bb2e9a8e5380ade8ap2@uc009bpa.1
3.25e-58FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_736b39e00629859bb2e9a8e5380ade8ap2@uc009bpa.1
3.74e-58FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_c3726a4c1be0a01e5c9daac91a03fdaap2@Sh2d1a
3.74e-58FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_c3726a4c1be0a01e5c9daac91a03fdaap2@Sh2d1a
7.15e-58FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_d43cd2cad3629b3ee33466345a8c58bcp1@uc012ekr.1
7.15e-58FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_d43cd2cad3629b3ee33466345a8c58bcp1@uc012ekr.1
9.05e-58FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_3628521cae3e212e299eab3dce51041fp2@1810009J06Rik
9.05e-58FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_3628521cae3e212e299eab3dce51041fp2@1810009J06Rik
1.34e-57FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_90140e8f14b92d125ab4cb6bc0faa063p1@uc012ekk.1
1.34e-57FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_90140e8f14b92d125ab4cb6bc0faa063p1@uc012ekk.1
1.56e-57FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_bd1a94fb0be835a284e60307e23a1be8p1@ENSMUST00000103265
1.56e-57FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_bd1a94fb0be835a284e60307e23a1be8p3@uc009bpo.1, p3@uc009bpp.1
1.56e-57FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_bd1a94fb0be835a284e60307e23a1be8p3@uc009bpo.1, p3@uc009bpp.1
1.56e-57FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_bd1a94fb0be835a284e60307e23a1be8p1@ENSMUST00000103265
3.61e-57FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_0e187d90351c2e8df9a74783b35d7e7ep@chr7:133512043..133512060, -
3.61e-57FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_0e187d90351c2e8df9a74783b35d7e7ep@chr7:133512043..133512060, -
4.31e-57FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_7e1aabdd7ea44ba1f086118d9b43df03p2@Gm5409
4.31e-57FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_7e1aabdd7ea44ba1f086118d9b43df03p2@Gm5409
6.91e-57FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_bf75b2a4519504d179ba22e32d52e5c9p4@Trat1
6.91e-57FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_bf75b2a4519504d179ba22e32d52e5c9p4@Trat1
6.93e-57FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_0e97750df4be94d7ff6c4252af1a1118p5@Trat1
6.93e-57FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_0e97750df4be94d7ff6c4252af1a1118p5@Trat1
7.43e-57FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_93b86e1d02b063fe89f3fcfc0c82f6c4p@chr6:41489240..41489252, +
7.43e-57FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_93b86e1d02b063fe89f3fcfc0c82f6c4p@chr6:41489240..41489252, +
1.27e-56FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_c94cc0cdec3bf6cabcce5ed455216c27p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.27e-56FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_c94cc0cdec3bf6cabcce5ed455216c27p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.56e-56FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_8725327fbdf00ccf3c167691ce07e97ap1@ENSMUST00000103282
1.56e-56FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_8725327fbdf00ccf3c167691ce07e97ap@chr6:41494376..41494389, -
1.56e-56FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_8725327fbdf00ccf3c167691ce07e97ap@chr6:41494376..41494389, -
1.56e-56FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_8725327fbdf00ccf3c167691ce07e97ap1@ENSMUST00000103282
1.67e-56FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_194f96f9c6b2d5eaf9ef8011189e17f8p1@ENSMUST00000103298, p1@uc009bpy.1
1.67e-56FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_194f96f9c6b2d5eaf9ef8011189e17f8p1@ENSMUST00000103298, p1@uc009bpy.1
1.92e-56FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_ef4640ad4a889834a7fd5b9cf8e6a162p@chr6:41492643..41492662, +
1.92e-56FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_ef4640ad4a889834a7fd5b9cf8e6a162p@chr6:41492643..41492662, +
2.05e-56FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_14f66a731043c7c722fd884cb49e26f9p@chr14:54794540..54794554, +
2.05e-56FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_14f66a731043c7c722fd884cb49e26f9p@chr14:54794540..54794554, +
2.23e-56FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_e9d7271ccaf52270f2a0573c91afccb3p@chr14:54496363..54496388, +
2.23e-56FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_e9d7271ccaf52270f2a0573c91afccb3p@chr6:41491801..41491815, -
2.23e-56FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_e9d7271ccaf52270f2a0573c91afccb3p@chr6:41491801..41491815, -
2.23e-56FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_e9d7271ccaf52270f2a0573c91afccb3p@chr14:54496363..54496388, +
2.36e-56FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_1c50d6c5dfb7dd8a19f13a6f2fa084a3p@chr6:41492605..41492621, +
2.36e-56FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_1c50d6c5dfb7dd8a19f13a6f2fa084a3p@chr6:41492605..41492621, +
2.54e-56FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_ef30aec9544f3c4b4c7e22e01df8405fp1@Il13
2.54e-56FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_ef30aec9544f3c4b4c7e22e01df8405fp1@Il13
2.88e-56FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_c844cb35ca488249c6509c3d076c1ed3p7@Lat
2.88e-56FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_c844cb35ca488249c6509c3d076c1ed3p7@Lat
3.14e-56FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_917fcd3ca94dd9991976521349bdf800p@chr6:41138311..41138333, +
3.14e-56FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_917fcd3ca94dd9991976521349bdf800p@chr6:41138311..41138333, +
4.06e-56FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_cfcc5a838fc25a9184568e70c3fb3c00p5@uc009bnp.1, p5@uc012eki.1
4.06e-56FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_cfcc5a838fc25a9184568e70c3fb3c00p5@uc009bnp.1, p5@uc012eki.1
4.76e-56FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_88ed89f34d1858e870eb7bf9d2574d27p@chr4:125978325..125978339, -
4.76e-56FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_88ed89f34d1858e870eb7bf9d2574d27p8@Lat
4.76e-56FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_88ed89f34d1858e870eb7bf9d2574d27p6@uc009bpa.1
4.76e-56FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_88ed89f34d1858e870eb7bf9d2574d27p6@uc009bpa.1
4.76e-56FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_88ed89f34d1858e870eb7bf9d2574d27p@chr4:125978325..125978339, -
4.76e-56FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_88ed89f34d1858e870eb7bf9d2574d27p8@Lat
3.9e-55FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_cc89b7017d2f0107b67a1d34207998afp2@Cd6
3.9e-55FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_cc89b7017d2f0107b67a1d34207998afp2@Cd6

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000974&oldid=3277154"