Personal tools

UBERON:0001961: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001961
|alt_id=UBERON:FMA_62819-MA_0000140
|name=mucosa-associated lymphoid tissue
|namespace=
|def="diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
|xref=FMA:62819;;MA:0000140;;ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
|is_a=UBERON:0001744
|synonym="epithelio-lymphoid tissue" EXACT [];;"MALT" EXACT [];;"mucosa associated lymphatic tissue" EXACT [];;"mucosa associated lymphoid tissue" EXACT [];;"mucosa-associated lymphoid tissue" EXACT [GO:0048537];;"mucosal-associated lymphatic tissue" EXACT [GO:0048537];;"mucosal-associated lymphoid tissue" EXACT [GO:0048537]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_62819-MA_0000140
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001961
|is_a=UBERON:0012069
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=mucosa-associated lymphoid tissue
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000344
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="epithelio-lymphoid tissue" EXACT [];;"MALT" EXACT [];;"mucosa associated lymphatic tissue" EXACT [];;"mucosa associated lymphoid tissue" EXACT [];;"mucosa-associated lymphoid tissue" EXACT [GO:0048537];;"mucosal-associated lymphatic tissue" EXACT [GO:0048537];;"mucosal-associated lymphoid tissue" EXACT [GO:0048537]
|union_of=
|xref=FMA:62819;;MA:0000140;;ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:mucosa-associated lymphoid tissue
Namespace:FANTOM
Definition:"diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
Xrefs:
links:

FMA:62819
MA:0000140

ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
Synonyms: "epithelio-lymphoid tissue" EXACT []
"MALT" EXACT []
"mucosa associated lymphatic tissue" EXACT []
"mucosa associated lymphoid tissue" EXACT []
"mucosa-associated lymphoid tissue" EXACT [GO:0048537]
"mucosal-associated lymphatic tissue" EXACT [GO:0048537]
"mucosal-associated lymphoid tissue" EXACT [GO:0048537]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_62819-MA_0000140
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0012069(epithelium-associated lymphoid tissue)
part_of:UBERON:0000344(mucosa)



Children

is a:UBERON:0001962 (gut-associated lymphoid tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001961 (mucosa-associated lymphoid tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001961&oldid=3277331"