UBERON:0001962: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_62820-MA_0000136 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001962 | |||
|is_a=UBERON:0001961 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=gut-associated lymphoid tissue | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001555 | |part_of=UBERON:0001555 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |||
|subset=uberon_slim | |||
|synonym="GALT" RELATED [];;"gut associated lymphoid tissue" EXACT [] | |||
|union_of= | |||
|xref=FMA:62820;;MA:0000136;;ncithesaurus:Gut_Associated_Lymphoid_Tissue | |||
}} | }} | ||
Latest revision as of 17:23, 12 September 2014
| Name: | gut-associated lymphoid tissue | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue] | |
| Xrefs: |
| |
| Synonyms: |
"GALT" RELATED [] "gut associated lymphoid tissue" EXACT [] | |
| Alt_id: | UBERON:FMA_62820-MA_0000136 | |
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001961(mucosa-associated lymphoid tissue) |
|---|---|
| part_of: | UBERON:0001555(digestive tract) |
Children
| is a: | UBERON:0001735 (tonsillar ring),UBERON:0002372 (tonsil) |
|---|---|
| derives from: | FF:0011473 (mouse Follicle Associated Epithelium sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 10261-104C9
- 10262-104D1 (Follicle Associated Epithelium, pool2)
- 10263-104D2 (Follicle Associated Epithelium, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001962 (gut-associated lymphoid tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
