UBERON:0002031: Difference between revisions

Latest revision as of 17:24, 12 September 2014

Name:

epithelium of bronchus

Namespace:

FANTOM

Definition:

"An epithelium that is part of a bronchus [Obol]." [OBOL:automatic]

Xrefs:

Expandlinks:

Synonyms:

"bronchi epithelial tissue" EXACT [OBOL:automatic]
"bronchi epithelium" EXACT [OBOL:automatic]
"bronchial epithelium" EXACT []
"bronchial trunk epithelial tissue" EXACT [OBOL:automatic]
"bronchial trunk epithelium" EXACT [OBOL:automatic]
"bronchus epithelial tissue" EXACT [OBOL:automatic]
"bronchus epithelium" EXACT []
"epithelial tissue of bronchi" EXACT [OBOL:automatic]
"epithelial tissue of bronchial trunk" EXACT [OBOL:automatic]
"epithelial tissue of bronchus" EXACT [OBOL:automatic]
"epithelium of bronchi" EXACT [OBOL:automatic]
"epithelium of bronchial trunk" EXACT [OBOL:automatic]

Comments:

This class was created automatically from a combination of ontologies

Alt_id:

UBERON:FMA_67782-MA_0001839

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0000485(simple columnar epithelium),UBERON:0004815(lower respiratory tract epithelium)
part_of:	UBERON:0002185(bronchus)

Children

part of:	CL:0002328 (bronchial epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

11453-119A4 (Bronchial Epithelial Cell, donor4)
11457-119A8 (Bronchial Epithelial Cell, donor5)
11461-119B3 (Bronchial Epithelial Cell, donor6)
11511-119G8 (Bronchial Epithelial Cell, donor1)
11591-120G7 (Bronchial Epithelial Cell, donor2)
11672-122G7 (Bronchial Epithelial Cell, donor3)
11769-123I5 (Bronchial Epithelial Cell, donor7)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002031 (epithelium of bronchus), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
1.71e-84	FFCP PHASE1:Hg19::chr3:189632708..189632721,-	p@chr3:189632708..189632721, -
1.71e-84	FFCP PHASE2:Hg19::chr3:189632708..189632721,-	p@chr3:189632708..189632721, -
2.4e-66	FFCP PHASE1:Hg19::chr1:209823455..209823467,-	p@chr1:209823455..209823467, -
2.4e-66	FFCP PHASE2:Hg19::chr1:209823455..209823467,-	p@chr1:209823455..209823467, -
3.13e-50	FFCP PHASE1:Hg19::chr1:95088552..95088567,+	p@chr1:95088552..95088567, +
3.13e-50	FFCP PHASE2:Hg19::chr1:95088552..95088567,+	p@chr1:95088552..95088567, +
1.03e-46	FFCP PHASE1:Hg19::chr1:3591362..3591369,-	p@chr1:3591362..3591369, -
1.03e-46	FFCP PHASE2:Hg19::chr1:3591362..3591369,-	p@chr1:3591362..3591369, -
5.0e-45	FFCP PHASE1:Hg19::chr2:113830230..113830233,-	p@chr2:113830230..113830233, -
5.0e-45	FFCP PHASE2:Hg19::chr2:113830230..113830233,-	p@chr2:113830230..113830233, -
1.92e-43	FFCP PHASE1:Hg19::chr10:73679250..73679255,-	p@chr10:73679250..73679255, -
1.92e-43	FFCP PHASE2:Hg19::chr10:73679250..73679255,-	p@chr10:73679250..73679255, -
7.6e-41	FFCP PHASE2:Hg19::chr1:9953308..9953320,-	p9@CTNNBIP1
7.6e-41	FFCP PHASE1:Hg19::chr1:9953308..9953320,-	p9@CTNNBIP1
1.49e-38	FFCP PHASE2:Hg19::chr17:48611912..48611919,+	p7@EPN3
1.49e-38	FFCP PHASE1:Hg19::chr17:48611912..48611919,+	p7@EPN3
1.62e-38	FFCP PHASE1:Hg19::chr1:95089255..95089279,-	p1@ENST00000435559
1.62e-38	FFCP PHASE2:Hg19::chr1:95089255..95089279,-	p1@ENST00000435559
1.8e-38	FFCP PHASE1:Hg19::chr7:135018332..135018336,+	p@chr7:135018332..135018336, +
1.8e-38	FFCP PHASE2:Hg19::chr7:135018332..135018336,+	p@chr7:135018332..135018336, +
3.06e-38	FFCP PHASE2:Hg19::chr17:48611940..48611947,+	p5@EPN3
3.06e-38	FFCP PHASE1:Hg19::chr17:48611940..48611947,+	p5@EPN3
5.76e-38	FFCP PHASE1:Hg19::chr2:74211227..74211238,+	p@chr2:74211227..74211238, +
5.76e-38	FFCP PHASE2:Hg19::chr2:74211227..74211238,+	p@chr2:74211227..74211238, +
2.35e-36	FFCP PHASE1:Hg19::chr17:38179639..38179652,-	p7@MED24
2.35e-36	FFCP PHASE2:Hg19::chr17:38179639..38179652,-	p7@MED24
2.53e-35	FFCP PHASE2:Hg19::chr20:14248741..14248745,-	p@chr20:14248741..14248745, -
2.53e-35	FFCP PHASE1:Hg19::chr20:14248741..14248745,-	p@chr20:14248741..14248745, -
1.96e-34	FFCP PHASE2:Hg19::chr17:38652393..38652403,-	p16@TNS4
1.96e-34	FFCP PHASE1:Hg19::chr17:38652393..38652403,-	p16@TNS4
2.75e-34	FFCP PHASE2:Hg19::chr1:153540420..153540455,+	p@chr1:153540420..153540455, +
2.75e-34	FFCP PHASE1:Hg19::chr1:153540420..153540455,+	p@chr1:153540420..153540455, +
3.07e-34	FFCP PHASE1:Hg19::chr12:52844247..52844256,-	p@chr12:52844247..52844256, -
3.07e-34	FFCP PHASE2:Hg19::chr12:52844247..52844256,-	p@chr12:52844247..52844256, -
5.51e-34	FFCP PHASE1:Hg19::chr11:94427497..94427507,-	p@chr11:94427497..94427507, -
5.51e-34	FFCP PHASE2:Hg19::chr11:94427497..94427507,-	p@chr11:94427497..94427507, -
5.96e-34	FFCP PHASE1:Hg19::chr1:27181551..27181558,-	p@chr1:27181551..27181558, -
5.96e-34	FFCP PHASE2:Hg19::chr1:27181551..27181558,-	p@chr1:27181551..27181558, -
6.76e-34	FFCP PHASE2:Hg19::chr1:183133608..183133625,-	p@chr1:183133608..183133625, -
6.76e-34	FFCP PHASE1:Hg19::chr1:183133608..183133625,-	p@chr1:183133608..183133625, -
1.27e-33	FFCP PHASE2:Hg19::chr3:190252374..190252383,-	p@chr3:190252374..190252383, -
1.27e-33	FFCP PHASE1:Hg19::chr3:190252374..190252383,-	p@chr3:190252374..190252383, -
1.5e-33	FFCP PHASE2:Hg19::chr8:29414184..29414190,+	p@chr8:29414184..29414190, +
1.5e-33	FFCP PHASE1:Hg19::chr8:29414184..29414190,+	p@chr8:29414184..29414190, +
6.66e-33	FFCP PHASE2:Hg19::chr14:67879076..67879080,+	p@chr14:67879076..67879080, +
6.66e-33	FFCP PHASE1:Hg19::chr14:67879076..67879080,+	p@chr14:67879076..67879080, +
1.14e-32	FFCP PHASE1:Hg19::chr1:209807970..209807983,-	p@chr1:209807970..209807983, -
1.14e-32	FFCP PHASE2:Hg19::chr1:209807970..209807983,-	p@chr1:209807970..209807983, -
2.68e-32	FFCP PHASE1:Hg19::chr6:83075367..83075383,-	p@chr6:83075367..83075383, -
2.68e-32	FFCP PHASE2:Hg19::chr6:83075367..83075383,-	p@chr6:83075367..83075383, -
2.95e-31	FFCP PHASE2:Hg19::chr4:15937715..15937733,-	p@chr4:15937715..15937733, -
2.95e-31	FFCP PHASE1:Hg19::chr4:15937715..15937733,-	p@chr4:15937715..15937733, -
6.66e-31	FFCP PHASE2:Hg19::chr9:26747081..26747110,+	p@chr9:26747081..26747110, +
6.66e-31	FFCP PHASE1:Hg19::chr9:26747081..26747110,+	p@chr9:26747081..26747110, +
1.0e-30	FFCP PHASE1:Hg19::chr11:120008883..120008884,-	p16@TRIM29
1.0e-30	FFCP PHASE2:Hg19::chr11:120008883..120008884,-	p16@TRIM29
1.09e-30	FFCP PHASE1:Hg19::chr13:61507880..61507904,-	p@chr13:61507880..61507904, -
1.09e-30	FFCP PHASE2:Hg19::chr13:61507880..61507904,-	p@chr13:61507880..61507904, -
1.47e-30	FFCP PHASE1:Hg19::chr1:152475755..152475761,+	p@chr1:152475755..152475761, +
1.47e-30	FFCP PHASE2:Hg19::chr1:152475755..152475761,+	p@chr1:152475755..152475761, +
1.66e-30	FFCP PHASE2:Hg19::chr17:39777017..39777027,+	p@chr17:39777017..39777027, +
1.66e-30	FFCP PHASE1:Hg19::chr17:39777017..39777027,+	p@chr17:39777017..39777027, +
1.71e-30	FFCP PHASE1:Hg19::chr4:82554167..82554171,+	p@chr4:82554167..82554171, +
1.71e-30	FFCP PHASE2:Hg19::chr4:82554167..82554171,+	p@chr4:82554167..82554171, +
2.24e-30	FFCP PHASE1:Hg19::chr1:209825932..209825936,-	p10@LAMB3
2.24e-30	FFCP PHASE2:Hg19::chr1:209825932..209825936,-	p10@LAMB3
3.1e-30	FFCP PHASE2:Hg19::chr15:76443020..76443024,-	p@chr15:76443020..76443024, -
3.1e-30	FFCP PHASE1:Hg19::chr15:76443020..76443024,-	p@chr15:76443020..76443024, -
3.11e-30	FFCP PHASE1:Hg19::chr17:39780624..39780631,-	p8@KRT17
3.11e-30	FFCP PHASE2:Hg19::chr17:39780624..39780631,-	p8@KRT17
5.61e-30	FFCP PHASE1:Hg19::chr1:156720278..156720286,+	p15@PRCC
5.61e-30	FFCP PHASE2:Hg19::chr1:156720278..156720286,+	p15@PRCC
8.74e-30	FFCP PHASE2:Hg19::chr14:94426721..94426726,+	p@chr14:94426721..94426726, +
8.74e-30	FFCP PHASE1:Hg19::chr14:94426721..94426726,+	p@chr14:94426721..94426726, +
1.34e-29	FFCP PHASE1:Hg19::chr12:52913881..52913889,+	p@chr12:52913881..52913889, +
1.34e-29	FFCP PHASE2:Hg19::chr12:52913881..52913889,+	p@chr12:52913881..52913889, +
1.63e-29	FFCP PHASE1:Hg19::chr17:73719483..73719489,-	p@chr17:73719483..73719489, -
1.63e-29	FFCP PHASE2:Hg19::chr17:73719483..73719489,-	p@chr17:73719483..73719489, -
1.98e-29	FFCP PHASE1:Hg19::chr1:209827520..209827532,-	p@chr1:209827520..209827532, -
1.98e-29	FFCP PHASE2:Hg19::chr1:209827520..209827532,-	p@chr1:209827520..209827532, -
2.64e-29	FFCP PHASE1:Hg19::chr12:56332022..56332030,+	p17@DGKA
2.64e-29	FFCP PHASE2:Hg19::chr12:56332022..56332030,+	p17@DGKA
3.27e-28	FFCP PHASE1:Hg19::chr17:38657781..38657786,-	p15@TNS4
3.27e-28	FFCP PHASE2:Hg19::chr17:38657781..38657786,-	p15@TNS4
4.32e-28	FFCP PHASE1:Hg19::chr1:55436540..55436544,-	p@chr1:55436540..55436544, -
4.32e-28	FFCP PHASE2:Hg19::chr1:55436540..55436544,-	p@chr1:55436540..55436544, -
6.24e-28	FFCP PHASE2:Hg19::chr1:153534013..153534025,+	p@chr1:153534013..153534025, +
6.24e-28	FFCP PHASE1:Hg19::chr1:153534013..153534025,+	p@chr1:153534013..153534025, +
8.22e-28	FFCP PHASE2:Hg19::chr17:39768786..39768828,-	p2@KRT16
8.22e-28	FFCP PHASE1:Hg19::chr17:39768786..39768828,-	p2@KRT16
1.22e-27	FFCP PHASE1:Hg19::chr1:44446555..44446566,+	p16@B4GALT2
1.22e-27	FFCP PHASE1:Hg19::chr19:48101913..48101916,-	p@chr19:48101913..48101916, -
1.22e-27	FFCP PHASE2:Hg19::chr1:153587360..153587377,-	p@chr1:153587360..153587377, -
1.22e-27	FFCP PHASE2:Hg19::chr1:44446555..44446566,+	p16@B4GALT2
1.22e-27	FFCP PHASE2:Hg19::chr19:48101913..48101916,-	p@chr19:48101913..48101916, -
1.22e-27	FFCP PHASE1:Hg19::chr2:70581573..70581577,-	p@chr2:70581573..70581577, -
1.22e-27	FFCP PHASE2:Hg19::chr2:70581573..70581577,-	p@chr2:70581573..70581577, -
1.22e-27	FFCP PHASE1:Hg19::chr1:153587360..153587377,-	p@chr1:153587360..153587377, -
1.39e-27	FFCP PHASE1:Hg19::chr2:20402306..20402318,-	p@chr2:20402306..20402318, -
1.39e-27	FFCP PHASE1:Hg19::chr1:46647115..46647118,-	p@chr1:46647115..46647118, -

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{UBERON
-|id=UBERON:0002031
+|alt_id=UBERON:FMA_67782-MA_0001839
-|name=epithelium of bronchus
-|namespace=
-|def="An epithelium that is part of a bronchus [Obol]." [OBOL:automatic]
-|xref=BTO:0001845;;EFO:0000307;;FMA:67782;;MA:0001839;;ncithesaurus:Bronchial_Epithelium
-|is_a=UBERON:0000485;;UBERON:0004815
-|synonym="bronchi epithelial tissue" EXACT [OBOL:automatic];;"bronchi epithelium" EXACT [OBOL:automatic];;"bronchial epithelium" EXACT [];;"bronchial trunk epithelial tissue" EXACT [OBOL:automatic];;"bronchial trunk epithelium" EXACT [OBOL:automatic];;"bronchus epithelial tissue" EXACT [OBOL:automatic];;"bronchus epithelium" EXACT [];;"epithelial tissue of bronchi" EXACT [OBOL:automatic];;"epithelial tissue of bronchial trunk" EXACT [OBOL:automatic];;"epithelial tissue of bronchus" EXACT [OBOL:automatic];;"epithelium of bronchi" EXACT [OBOL:automatic];;"epithelium of bronchial trunk" EXACT [OBOL:automatic]
 |comment=This class was created automatically from a combination of ontologies
-|alt_id=UBERON:FMA_67782-MA_0001839
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def="An epithelium that is part of a bronchus [Obol]." [OBOL:automatic]
-|subset=
-|adjacent_to=
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=UBERON:0002031
+|is_a=UBERON:0000485 ;;UBERON:0004815
+|is_obsolete=
 |located_in=
+|name=epithelium of bronchus
+|namespace=FANTOM
+|obo_creation_date=
 |part_of=UBERON:0002185
-|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+|preceded_by=
+|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+|subset=
+|synonym="bronchi epithelial tissue" EXACT [OBOL:automatic];;"bronchi epithelium" EXACT [OBOL:automatic];;"bronchial epithelium" EXACT [];;"bronchial trunk epithelial tissue" EXACT [OBOL:automatic];;"bronchial trunk epithelium" EXACT [OBOL:automatic];;"bronchus epithelial tissue" EXACT [OBOL:automatic];;"bronchus epithelium" EXACT [];;"epithelial tissue of bronchi" EXACT [OBOL:automatic];;"epithelial tissue of bronchial trunk" EXACT [OBOL:automatic];;"epithelial tissue of bronchus" EXACT [OBOL:automatic];;"epithelium of bronchi" EXACT [OBOL:automatic];;"epithelium of bronchial trunk" EXACT [OBOL:automatic]
+|union_of=
+|xref=BTO:0001845;;EFO:0000307;;FMA:67782;;MA:0001839;;ncithesaurus:Bronchial_Epithelium
 }}

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Latest revision as of 17:24, 12 September 2014

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